Rh2DG491900

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017700
Physical Location & Seq
Forward (+)
71225221 .. 71226022
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG491900.1

Sequence Viewer

Length: 543 bp
ATGATTAATCAGCATGAAACCCTTTGCATGCATGAACTTAGCCATTCAGAGCCATTAATCCGTCATCAACATCAGCTTCATCACATTCATCGCCATCGAAACTACAACATGAAGCAGCAGCTGATAAGGCACATTGGCGCGTGGCCAAAGAACAGCATTCACCGGCTATCGCTTTGGTTTCCTCCAAACCACAAACATCCAGTTGTTTCCGGGGGACTCTTAGACCCCGGTGAGAACTCTGCAGAATCGTTGCTGGCCGGAGAGTTGTCTGATGGCCACCGGGCCTCGGTGCAAGTTCCGAAAGGGTTCATTGCAGTATACGTGGGCCCCGAGCTTCGCAGGTTTGTGATTCCCATGAGTTGCTTGTCGTCGCCAGATTTTAGGGTTTTGATGGATAGGGTGGAAGACGAGTACGGATTTGAGCAAGAAGGTGCACTTAGAATTCCTTGTGATGAAGAAGATTTTGAGCATATTTTGGTCAGGTGTCTGTCAAACCAAAAGAAGAATGATAAGAAAATCAGAAAACAGGTTTTGATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

180

Amino Acids

20.88

Weight (kDa)

7.27

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 94 - 159 2e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36850
malus_domestica MD09G1166300.v1.1
prunus_persica Prupe.3G024000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149241
rosa_laevigata RLG00000020386
rosa_multiflora Rmu_sc0001615.1_g000008
rosa_roxburghii Rroxscaffold_2G00098280
rosa_rugosa Rorug02G0410000
rosa_samantha Rh2AG470600 Rh2BG482900 Rh2DG491900
rosa_wichuraiana Rw2G038270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 330
AccI GTMKAC 1 cut(s) 318
AccII CGCG 1 cut(s) 140
AcoI YGGCCR 3 cut(s) 143, 255, 274
AcsI RAATTY 1 cut(s) 441
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 286
AluBI AGCT 3 cut(s) 76, 121, 334
AluI AGCT 3 cut(s) 76, 121, 334
Alw21I GWGCWC 1 cut(s) 436
Alw44I GTGCAC 1 cut(s) 432
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 5 cut(s) 143, 255, 274, 282, 325
ApaI GGGCCC 1 cut(s) 329
ApaLI GTGCAC 1 cut(s) 432
ApeKI GCWGC 2 cut(s) 115, 118
ApoI RAATTY 1 cut(s) 441
AseI ATTAAT 3 cut(s) 6, 56, 537
Asp700I GAANNNNTTC 1 cut(s) 305
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 3 cut(s) 282, 325, 326
AsuC2I CCSGG 3 cut(s) 211, 228, 281
AsuHPI GGTGA 2 cut(s) 152, 242
AvaI CYCGRG 1 cut(s) 329
BaeGI GKGCMC 2 cut(s) 329, 436
BalI TGGCCA 2 cut(s) 145, 276
BanII GRGCYC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 2 cut(s) 127, 130
BccI CCATC 3 cut(s) 102, 266, 385
BcnI CCSGG 3 cut(s) 211, 228, 281
BfmI CTRYAG 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 330
BisI GCNGC 2 cut(s) 116, 119
BlsI GCNGC 2 cut(s) 117, 120
Bme1390I CCNGG 3 cut(s) 211, 228, 281
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 3 cut(s) 282, 325, 326
BmiI GGNNCC 2 cut(s) 327, 328
BmrFI CCNGG 3 cut(s) 211, 228, 281
BpiI GAAGAC 1 cut(s) 411
BpuMI CCSGG 3 cut(s) 211, 228, 281
BsaAI YACGTR 1 cut(s) 322
BsaJI CCNNGG 3 cut(s) 210, 226, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 200
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 210, 226, 285
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 309
BseNI ACTGG 1 cut(s) 200
BseSI GKGCMC 2 cut(s) 329, 436
BseXI GCAGC 2 cut(s) 127, 130
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 5 cut(s) 145, 257, 276, 284, 327
BsiHKAI GWGCWC 1 cut(s) 436
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 5 cut(s) 163, 210, 228, 258, 280
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 228
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 5 cut(s) 145, 257, 276, 284, 327
BsoBI CYCGRG 1 cut(s) 329
Bsp120I GGGCCC 1 cut(s) 325
Bsp1286I GDGCHC 2 cut(s) 329, 436
BspANI GGCC 5 cut(s) 145, 257, 276, 284, 327
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 327, 328
BspMAI CTGCAG 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 162
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 162
BssECI CCNNGG 3 cut(s) 210, 226, 285
BssNAI GTATAC 1 cut(s) 319
Bst1107I GTATAC 1 cut(s) 319
BstBAI YACGTR 1 cut(s) 322
BstC8I GCNNGC 2 cut(s) 29, 255
BstDEI CTNAG 3 cut(s) 38, 220, 437
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 140
BstHHI GCGC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 3 cut(s) 209, 226, 279
BstSFI CTRYAG 1 cut(s) 240
BstSLI GKGCMC 2 cut(s) 329, 436
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 127, 130
BstV2I GAAGAC 1 cut(s) 411
BstZ17I GTATAC 1 cut(s) 319
BsuRI GGCC 5 cut(s) 145, 257, 276, 284, 327
BtgZI GCGATG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 196
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 29, 255
CaiI CAGNNNCTG 1 cut(s) 121
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 162
Cfr13I GGNCC 3 cut(s) 282, 325, 326
Csp6I GTAC 1 cut(s) 412
CviAII CATG 5 cut(s) 14, 28, 32, 109, 355
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 3 cut(s) 38, 220, 437
EaeI YGGCCR 3 cut(s) 143, 255, 274
Eco24I GRGCYC 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 329
FaeI CATG 5 cut(s) 17, 31, 35, 112, 358
FaiI YATR 7 cut(s) 15, 29, 33, 110, 319, 356, 471
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 228
FatI CATG 5 cut(s) 13, 27, 31, 108, 354
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 116, 119
FokI GGATG 1 cut(s) 183
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 2 cut(s) 116, 119
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 116, 119
HaeIII GGCC 5 cut(s) 145, 257, 276, 284, 327
HapII CCGG 5 cut(s) 163, 210, 228, 258, 280
HhaI GCGC 1 cut(s) 140
Hin1II CATG 5 cut(s) 17, 31, 35, 112, 358
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 3 cut(s) 216, 245, 349
HpaII CCGG 5 cut(s) 163, 210, 228, 258, 280
HphI GGTGA 2 cut(s) 152, 242
Hpy166II GTNNAC 2 cut(s) 319, 434
Hpy188I TCNGA 4 cut(s) 49, 271, 300, 521
Hpy8I GTNNAC 2 cut(s) 319, 434
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 1 cut(s) 422
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 6 cut(s) 27, 31, 242, 292, 314, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 3 cut(s) 38, 220, 437
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 5 cut(s) 17, 31, 35, 112, 358
HspAI GCGC 1 cut(s) 138
Lsp1109I GCAGC 2 cut(s) 127, 130
MaeII ACGT 1 cut(s) 321
MboII GAAGA 4 cut(s) 416, 467, 470, 514
MhlI GDGCHC 2 cut(s) 329, 436
MlsI TGGCCA 2 cut(s) 145, 276
MluCI AATT 2 cut(s) 441, 538
MluNI TGGCCA 2 cut(s) 145, 276
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 2 cut(s) 192, 295
Mox20I TGGCCA 2 cut(s) 145, 276
Mph1103I ATGCAT 1 cut(s) 33
MroXI GAANNNNTTC 1 cut(s) 305
MscI TGGCCA 2 cut(s) 145, 276
MseI TTAA 3 cut(s) 6, 56, 537
Msp20I TGGCCA 2 cut(s) 145, 276
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 5 cut(s) 163, 210, 228, 258, 280
MspR9I CCNGG 3 cut(s) 211, 228, 281
Mva1269I GAATGC 1 cut(s) 156
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 127
NciI CCSGG 3 cut(s) 211, 228, 281
NlaIII CATG 5 cut(s) 17, 31, 35, 112, 358
NlaIV GGNNCC 2 cut(s) 327, 328
NsiI ATGCAT 1 cut(s) 33
NspI RCATGY 1 cut(s) 31
PaeI GCATGC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PctI GAATGC 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 2 cut(s) 245, 349
PkrI GCNGC 2 cut(s) 117, 120
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
Ppu21I YACGTR 1 cut(s) 322
PshBI ATTAAT 3 cut(s) 6, 56, 537
PspN4I GGNNCC 2 cut(s) 327, 328
PspOMI GGGCCC 1 cut(s) 325
PspPI GGNCC 3 cut(s) 282, 325, 326
PstI CTGCAG 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 121
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SaqAI TTAA 3 cut(s) 6, 56, 537
SatI GCNGC 2 cut(s) 116, 119
Sau96I GGNCC 3 cut(s) 282, 325, 326
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 3 cut(s) 211, 228, 281
SduI GDGCHC 2 cut(s) 329, 436
SetI ASST 8 cut(s) 78, 123, 324, 336, 344, 433, 485, 531
SfcI CTRYAG 1 cut(s) 240
SphI GCATGC 1 cut(s) 31
Sse9I AATT 2 cut(s) 441, 538
StyD4I CCNGG 3 cut(s) 209, 226, 279
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 97
TasI AATT 2 cut(s) 441, 538
TfiI GAWTC 2 cut(s) 245, 349
Tru1I TTAA 3 cut(s) 6, 56, 537
Tru9I TTAA 3 cut(s) 6, 56, 537
TseI GCWGC 2 cut(s) 115, 118
TspDTI ATGAA 7 cut(s) 30, 48, 68, 77, 125, 298, 468
TspGWI ACGGA 2 cut(s) 50, 429
VneI GTGCAC 1 cut(s) 432
VspI ATTAAT 3 cut(s) 6, 56, 537
XapI RAATTY 1 cut(s) 441
XceI RCATGY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 318
XmnI GAANNNNTTC 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.