MD09G1166300.v1.1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0017700
Physical Location & Seq
Reverse (-)
13625736 .. 13626182
447 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1166300.v1.1.491

Sequence Viewer

Length: 447 bp
ATGAAGCAACAAATAGCAAGGCACATTGCATGGCCCAAGAACATGAACATTCAGCGCCTGTGGGTGTGGTTGCCCCCACTAAACCACAAACCAGGAGCTGTTACCGGGAAGAATATGGCGATAAACCTCTTGGAATCCGGTGAGAACTCCGATGGGTCATTGCTGGCCGGAGAATTGTCTGACGGCCGTCGCGGGGGAGCTTCAATGATGCAAGTTCCCAAAGGGTTCTTGGCAGTTTACGTGGGGCCCGAGCTTCGGAGGTTTGTCATCCCCATGAGCTGTTTGTCATCACCGGATTTTAGGGTTTTGATGGATAGAGTGGAAGAGGAGTATGGGTTTGAGCAAGAAGGTGCGCTTAAAATCCCTTGTGATGAAGAGGATTTTGAGCATATTTTGATGAGGTCTTTGGCAAACTATAAGAAGAATGATAAGAAGAAAAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

149

Amino Acids

16.8

Weight (kDa)

8.55

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 67 - 132 8.7e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36850
malus_domestica MD09G1166300.v1.1
prunus_persica Prupe.3G024000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149241
rosa_laevigata RLG00000020386
rosa_multiflora Rmu_sc0001615.1_g000008
rosa_roxburghii Rroxscaffold_2G00098280
rosa_rugosa Rorug02G0410000
rosa_samantha Rh2AG470600 Rh2BG482900 Rh2DG491900
rosa_wichuraiana Rw2G038270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 192
AciI CCGC 1 cut(s) 192
AcoI YGGCCR 2 cut(s) 165, 184
AfiI CCNNNNNNNGG 2 cut(s) 193, 255
AgsI TTSAA 1 cut(s) 204
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 4 cut(s) 98, 200, 253, 279
AluI AGCT 4 cut(s) 98, 200, 253, 279
AlwNI CAGNNNCTG 2 cut(s) 58, 98
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 4 cut(s) 32, 165, 184, 245
ApaI GGGCCC 1 cut(s) 249
AspLEI GCGC 2 cut(s) 57, 355
AspS9I GGNCC 3 cut(s) 33, 245, 246
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 2 cut(s) 152, 282
AvaI CYCGRG 1 cut(s) 248
BaeGI GKGCMC 1 cut(s) 249
BanII GRGCYC 1 cut(s) 249
BccI CCATC 2 cut(s) 146, 304
BceAI ACGGC 2 cut(s) 171, 199
BciT130I CCWGG 1 cut(s) 93
BcnI CCSGG 1 cut(s) 106
BfoI RGCGCY 1 cut(s) 58
BglII AGATCT 1 cut(s) 441
Bme1390I CCNGG 2 cut(s) 93, 106
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 3 cut(s) 33, 245, 246
BmiI GGNNCC 2 cut(s) 246, 247
BmrFI CCNGG 2 cut(s) 93, 106
BmsI GCATC 1 cut(s) 198
BoxI GACNNNNGTC 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 241
BsaWI WCCGGW 2 cut(s) 137, 292
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 255
Bse3DI GCAATG 2 cut(s) 24, 158
BseBI CCWGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 193, 255
BseMI GCAATG 2 cut(s) 24, 158
BseRI GAGGAG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 249
BseX3I CGGCCG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 192
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 4 cut(s) 34, 167, 186, 247
BsiEI CGRYCG 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 4 cut(s) 105, 138, 168, 293
BslI CCNNNNNNNGG 2 cut(s) 193, 255
BsnI GGCC 4 cut(s) 34, 167, 186, 247
BsoBI CYCGRG 1 cut(s) 248
Bsp120I GGGCCC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 441
BspACI CCGC 1 cut(s) 192
BspANI GGCC 4 cut(s) 34, 167, 186, 247
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 246, 247
BsrDI GCAATG 2 cut(s) 24, 158
BssMI GATC 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 93
Bst6I CTCTTC 2 cut(s) 318, 369
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 165
BstF5I GGATG 1 cut(s) 267
BstFNI CGCG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 2 cut(s) 57, 355
BstKTI GATC 1 cut(s) 444
BstMBI GATC 1 cut(s) 441
BstMCI CGRYCG 1 cut(s) 187
BstNI CCWGG 1 cut(s) 93
BstPAI GACNNNNGTC 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 91, 104
BstSLI GKGCMC 1 cut(s) 249
BstUI CGCG 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 441
BstYI RGATCY 1 cut(s) 441
BstZI CGGCCG 1 cut(s) 184
BsuRI GGCC 4 cut(s) 34, 167, 186, 247
BtsCI GGATG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 165
CaiI CAGNNNCTG 2 cut(s) 58, 98
CfoI GCGC 2 cut(s) 57, 355
Cfr13I GGNCC 3 cut(s) 33, 245, 246
CviAII CATG 3 cut(s) 30, 43, 274
CviJI RGCY 8 cut(s) 34, 98, 167, 186, 200, 247, 253, 279
CviKI_1 RGCY 8 cut(s) 34, 98, 167, 186, 200, 247, 253, 279
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
EaeI YGGCCR 2 cut(s) 165, 184
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 2 cut(s) 318, 369
EarI CTCTTC 2 cut(s) 318, 369
EclXI CGGCCG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 249
Eco52I CGGCCG 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 3 cut(s) 33, 46, 277
FaiI YATR 7 cut(s) 31, 44, 116, 275, 333, 390, 417
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FatI CATG 3 cut(s) 29, 42, 273
FauI CCCGC 1 cut(s) 185
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 249
GlaI GCGC 2 cut(s) 56, 354
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 4 cut(s) 34, 167, 186, 247
HapII CCGG 4 cut(s) 105, 138, 168, 293
HhaI GCGC 2 cut(s) 57, 355
Hin1II CATG 3 cut(s) 33, 46, 277
Hin6I GCGC 2 cut(s) 55, 353
HinP1I GCGC 2 cut(s) 55, 353
HinfI GANTC 1 cut(s) 134
HpaII CCGG 4 cut(s) 105, 138, 168, 293
HphI GGTGA 2 cut(s) 152, 282
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 3 cut(s) 151, 181, 258
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 29, 211
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 3 cut(s) 33, 46, 277
HspAI GCGC 2 cut(s) 55, 353
Kzo9I GATC 1 cut(s) 441
LmnI GCTCC 2 cut(s) 95, 197
LpnPI CCDG 8 cut(s) 71, 78, 105, 118, 149, 151, 181, 306
LweI GCATC 1 cut(s) 198
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 5 cut(s) 121, 335, 386, 433, 445
MflI RGATCY 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 173
MnlI CCTC 5 cut(s) 137, 252, 319, 370, 393
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 272
MspI CCGG 4 cut(s) 105, 138, 168, 293
MspR9I CCNGG 2 cut(s) 93, 106
MvaI CCWGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 192
NciI CCSGG 1 cut(s) 106
NdeII GATC 1 cut(s) 441
NlaIII CATG 3 cut(s) 33, 46, 277
NlaIV GGNNCC 2 cut(s) 246, 247
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PfeI GAWTC 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 241
PshAI GACNNNNGTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 246, 247
PspOMI GGGCCC 1 cut(s) 245
PspPI GGNCC 3 cut(s) 33, 245, 246
PstNI CAGNNNCTG 2 cut(s) 58, 98
PsuI RGATCY 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 357
Sau3AI GATC 1 cut(s) 441
Sau96I GGNCC 3 cut(s) 33, 245, 246
ScrFI CCNGG 2 cut(s) 93, 106
SduI GDGCHC 1 cut(s) 249
SetI ASST 9 cut(s) 100, 129, 202, 243, 255, 263, 281, 352, 404
SfaNI GCATC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 1 cut(s) 173
SsiI CCGC 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 91, 104
TaiI ACGT 1 cut(s) 243
TasI AATT 1 cut(s) 173
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TspDTI ATGAA 3 cut(s) 17, 59, 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.