RLG00000020386

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017700
Physical Location & Seq
Forward (+)
64459519 .. 64460170
652 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020386

Sequence Viewer

Length: 444 bp
ATGAAGCAGCAGCTGATAAGACACATTGGCGCGTGGCCAAAGAACAGCATTCACCGGCTATCGCTTTGGTTTCCTCCAAACCACAAACATCCAGTTGTTTCCGGGGGACTCTTAGACTCCTGTGAGAACTCTGCAGAATCGTTGCTGGCCGGAGAGTTGTCTGATGGCCACCGGGCCTCGGTGCAAGTTCCGAAAGGGTTCATTGCAGTATACGTGGGCCCCGAGCTTCGCAGGTTTGTGATTCCCATGAGCTGCTTGTCGTCGCCAGATTTTAGGGTTTTGATGGATAGGGTGGAAGACGAGTATGGATTTGAGCAACAAGGTGCACTTAGAATTCCTTGTGATGAAGAAGATTTTGAGCATATTTTGGTCAGGCAGAAGCAGAATGTGTACATAGCAATTGGTTCAAGGAAATTATCTCCCATTTACTCGCAATTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

148

Amino Acids

16.69

Weight (kDa)

6.58

Isoelectric Point (pI)

62.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 57 - 123 7.1e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36850
malus_domestica MD09G1166300.v1.1
prunus_persica Prupe.3G024000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149241
rosa_laevigata RLG00000020386
rosa_multiflora Rmu_sc0001615.1_g000008
rosa_roxburghii Rroxscaffold_2G00098280
rosa_rugosa Rorug02G0410000
rosa_samantha Rh2AG470600 Rh2BG482900 Rh2DG491900
rosa_wichuraiana Rw2G038270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 222
AccI GTMKAC 1 cut(s) 210
AccII CGCG 1 cut(s) 32
AcoI YGGCCR 3 cut(s) 35, 147, 166
AcsI RAATTY 1 cut(s) 333
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 408
AluBI AGCT 3 cut(s) 13, 226, 252
AluI AGCT 3 cut(s) 13, 226, 252
Alw21I GWGCWC 1 cut(s) 328
Alw44I GTGCAC 1 cut(s) 324
AlwNI CAGNNNCTG 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 5 cut(s) 35, 147, 166, 174, 217
ApaI GGGCCC 1 cut(s) 221
ApaLI GTGCAC 1 cut(s) 324
ApeKI GCWGC 3 cut(s) 7, 10, 252
ApoI RAATTY 1 cut(s) 333
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 3 cut(s) 174, 217, 218
AsuC2I CCSGG 2 cut(s) 103, 173
AsuHPI GGTGA 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 221
BaeGI GKGCMC 2 cut(s) 221, 328
BalI TGGCCA 2 cut(s) 37, 168
BanII GRGCYC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 3 cut(s) 19, 22, 239
BccI CCATC 2 cut(s) 158, 277
BcnI CCSGG 2 cut(s) 103, 173
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 222
BisI GCNGC 3 cut(s) 8, 11, 253
BlsI GCNGC 3 cut(s) 9, 12, 254
Bme1390I CCNGG 2 cut(s) 103, 173
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 174, 217, 218
BmiI GGNNCC 2 cut(s) 219, 220
BmrFI CCNGG 2 cut(s) 103, 173
BpiI GAAGAC 1 cut(s) 303
BpuMI CCSGG 2 cut(s) 103, 173
BsaAI YACGTR 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 102, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 102, 177
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 92
BseSI GKGCMC 2 cut(s) 221, 328
BseXI GCAGC 3 cut(s) 19, 22, 239
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 5 cut(s) 37, 149, 168, 176, 219
BsiHKAI GWGCWC 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 4 cut(s) 55, 102, 150, 172
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 48
BsnI GGCC 5 cut(s) 37, 149, 168, 176, 219
BsoBI CYCGRG 1 cut(s) 221
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 221, 328
Bsp1407I TGTACA 1 cut(s) 390
BspANI GGCC 5 cut(s) 37, 149, 168, 176, 219
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 219, 220
BspMAI CTGCAG 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 102, 177
BssNAI GTATAC 1 cut(s) 211
Bst1107I GTATAC 1 cut(s) 211
BstAUI TGTACA 1 cut(s) 390
BstBAI YACGTR 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 112, 329
BstF5I GGATG 1 cut(s) 88
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 1 cut(s) 32
BstSCI CCNGG 2 cut(s) 101, 171
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 2 cut(s) 221, 328
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 19, 22, 239
BstV2I GAAGAC 1 cut(s) 303
BstZ17I GTATAC 1 cut(s) 211
BsuRI GGCC 5 cut(s) 37, 149, 168, 176, 219
BtsCI GGATG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 13
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 54
Cfr13I GGNCC 3 cut(s) 174, 217, 218
Csp6I GTAC 1 cut(s) 391
CviAII CATG 1 cut(s) 247
CviJI RGCY 9 cut(s) 13, 37, 58, 149, 168, 176, 219, 226, 252
CviKI_1 RGCY 9 cut(s) 13, 37, 58, 149, 168, 176, 219, 226, 252
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 2 cut(s) 112, 329
EaeI YGGCCR 3 cut(s) 35, 147, 166
Eco24I GRGCYC 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 221
FaeI CATG 1 cut(s) 250
FaiI YATR 5 cut(s) 211, 248, 306, 363, 395
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 120
FatI CATG 1 cut(s) 246
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 8, 11, 253
FokI GGATG 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 3 cut(s) 8, 11, 253
GlaI GCGC 1 cut(s) 31
GluI GCNGC 3 cut(s) 8, 11, 253
HaeIII GGCC 5 cut(s) 37, 149, 168, 176, 219
HapII CCGG 4 cut(s) 55, 102, 150, 172
HhaI GCGC 1 cut(s) 32
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 4 cut(s) 108, 116, 137, 241
HpaII CCGG 4 cut(s) 55, 102, 150, 172
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 3 cut(s) 211, 326, 391
Hpy188I TCNGA 2 cut(s) 163, 192
Hpy8I GTNNAC 3 cut(s) 211, 326, 391
Hpy99I CGWCG 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 4 cut(s) 134, 184, 206, 326
HpyF3I CTNAG 2 cut(s) 112, 329
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 1 cut(s) 30
Lsp1109I GCAGC 3 cut(s) 19, 22, 239
MaeII ACGT 1 cut(s) 213
MboII GAAGA 3 cut(s) 308, 359, 362
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 2 cut(s) 221, 328
MlsI TGGCCA 2 cut(s) 37, 168
MluCI AATT 5 cut(s) 333, 399, 413, 434, 439
MluNI TGGCCA 2 cut(s) 37, 168
MlyI GAGTC 2 cut(s) 102, 110
MnlI CCTC 2 cut(s) 84, 187
Mox20I TGGCCA 2 cut(s) 37, 168
MroXI GAANNNNTTC 1 cut(s) 197
MscI TGGCCA 2 cut(s) 37, 168
MseI TTAA 1 cut(s) 438
Msp20I TGGCCA 2 cut(s) 37, 168
MspA1I CMGCKG 1 cut(s) 13
MspI CCGG 4 cut(s) 55, 102, 150, 172
MspR9I CCNGG 2 cut(s) 103, 173
MunI CAATTG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 48
MvnI CGCG 1 cut(s) 32
NciI CCSGG 2 cut(s) 103, 173
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 2 cut(s) 219, 220
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 137, 241
PkrI GCNGC 3 cut(s) 9, 12, 254
PleI GAGTC 2 cut(s) 102, 110
PpsI GAGTC 2 cut(s) 102, 110
Ppu21I YACGTR 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 219, 220
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 3 cut(s) 174, 217, 218
PstI CTGCAG 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 13
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 3 cut(s) 8, 11, 253
Sau96I GGNCC 3 cut(s) 174, 217, 218
SchI GAGTC 2 cut(s) 102, 110
ScrFI CCNGG 2 cut(s) 103, 173
SduI GDGCHC 2 cut(s) 221, 328
SetI ASST 6 cut(s) 15, 216, 228, 236, 254, 325
SfcI CTRYAG 1 cut(s) 132
Sse9I AATT 5 cut(s) 333, 399, 413, 434, 439
StyD4I CCNGG 2 cut(s) 101, 171
TaiI ACGT 1 cut(s) 216
TasI AATT 5 cut(s) 333, 399, 413, 434, 439
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 2 cut(s) 137, 241
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TseI GCWGC 3 cut(s) 7, 10, 252
TspDTI ATGAA 3 cut(s) 17, 190, 360
VneI GTGCAC 1 cut(s) 324
XapI RAATTY 1 cut(s) 333
XmiI GTMKAC 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.