Rh2AG470600

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017700
Physical Location & Seq
Forward (+)
69023766 .. 69024200
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG470600.1

Sequence Viewer

Length: 435 bp
ATGAAGCAGCAGCTGATAAGGCACATTGGCGCGTGGCCAAAGAACAGCATTCACCGGCTATCGCTTTGGTTTCCTCCAAACCACAAACATCCAGTTGTTTCCGGGGGACTCTTAGACTCCGGTGAGAACTCTGCAGAATCGTTGCTGGCCGGAGAGTTGTCTGATGGCCACCGGGCCTCGGTGCAAGTTCCGAAAGGGTTCATTGCAGTATACGTGGGCCCCGAGCTTCGCAGGTTTGTGATTCCCATGAGTTGCTTGTCGTCGCCAGATTTTAGGGTTTTGATGGATAGGGTGGAAGACGAGTATGGATTTGAGCAAGAAGGTGCACTTAGAATTCCTTGTGATGAAGAAGATTTTGAGCATATTTTGGTCAGGTGTCTGTCAAACCAAAAGAAGAATGATAAGAAAATCAGAAAACAGGTTTTGATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

144

Amino Acids

16.36

Weight (kDa)

7.01

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 57 - 123 8.5e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36850
malus_domestica MD09G1166300.v1.1
prunus_persica Prupe.3G024000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149241
rosa_laevigata RLG00000020386
rosa_multiflora Rmu_sc0001615.1_g000008
rosa_roxburghii Rroxscaffold_2G00098280
rosa_rugosa Rorug02G0410000
rosa_samantha Rh2AG470600 Rh2BG482900 Rh2DG491900
rosa_wichuraiana Rw2G038270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 222
AccI GTMKAC 1 cut(s) 210
AccII CGCG 1 cut(s) 32
AcoI YGGCCR 3 cut(s) 35, 147, 166
AcsI RAATTY 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 178
AluBI AGCT 2 cut(s) 13, 226
AluI AGCT 2 cut(s) 13, 226
Alw21I GWGCWC 1 cut(s) 328
Alw44I GTGCAC 1 cut(s) 324
AlwNI CAGNNNCTG 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 5 cut(s) 35, 147, 166, 174, 217
ApaI GGGCCC 1 cut(s) 221
ApaLI GTGCAC 1 cut(s) 324
ApeKI GCWGC 2 cut(s) 7, 10
ApoI RAATTY 1 cut(s) 333
AseI ATTAAT 1 cut(s) 429
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 3 cut(s) 174, 217, 218
AsuC2I CCSGG 2 cut(s) 103, 173
AsuHPI GGTGA 2 cut(s) 44, 134
AvaI CYCGRG 1 cut(s) 221
BaeGI GKGCMC 2 cut(s) 221, 328
BalI TGGCCA 2 cut(s) 37, 168
BanII GRGCYC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 2 cut(s) 19, 22
BccI CCATC 2 cut(s) 158, 277
BcnI CCSGG 2 cut(s) 103, 173
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 222
BisI GCNGC 2 cut(s) 8, 11
BlsI GCNGC 2 cut(s) 9, 12
Bme1390I CCNGG 2 cut(s) 103, 173
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 174, 217, 218
BmiI GGNNCC 2 cut(s) 219, 220
BmrFI CCNGG 2 cut(s) 103, 173
BpiI GAAGAC 1 cut(s) 303
BpuMI CCSGG 2 cut(s) 103, 173
BsaAI YACGTR 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 102, 177
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 102, 177
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 92
BseSI GKGCMC 2 cut(s) 221, 328
BseXI GCAGC 2 cut(s) 19, 22
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 5 cut(s) 37, 149, 168, 176, 219
BsiHKAI GWGCWC 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 5 cut(s) 55, 102, 120, 150, 172
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 48
BsnI GGCC 5 cut(s) 37, 149, 168, 176, 219
BsoBI CYCGRG 1 cut(s) 221
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 221, 328
BspANI GGCC 5 cut(s) 37, 149, 168, 176, 219
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 219, 220
BspMAI CTGCAG 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 54
BsrI ACTGG 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 102, 177
BssNAI GTATAC 1 cut(s) 211
Bst1107I GTATAC 1 cut(s) 211
BstBAI YACGTR 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 112, 329
BstF5I GGATG 1 cut(s) 88
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstSCI CCNGG 2 cut(s) 101, 171
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 2 cut(s) 221, 328
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 19, 22
BstV2I GAAGAC 1 cut(s) 303
BstZ17I GTATAC 1 cut(s) 211
BsuRI GGCC 5 cut(s) 37, 149, 168, 176, 219
BtsCI GGATG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 13
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 54
Cfr13I GGNCC 3 cut(s) 174, 217, 218
CviAII CATG 1 cut(s) 247
CviJI RGCY 8 cut(s) 13, 37, 58, 149, 168, 176, 219, 226
CviKI_1 RGCY 8 cut(s) 13, 37, 58, 149, 168, 176, 219, 226
DdeI CTNAG 2 cut(s) 112, 329
EaeI YGGCCR 3 cut(s) 35, 147, 166
Eco24I GRGCYC 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 221
FaeI CATG 1 cut(s) 250
FaiI YATR 4 cut(s) 211, 248, 306, 363
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 120
FatI CATG 1 cut(s) 246
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 8, 11
FokI GGATG 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 2 cut(s) 8, 11
GlaI GCGC 1 cut(s) 31
GluI GCNGC 2 cut(s) 8, 11
HaeIII GGCC 5 cut(s) 37, 149, 168, 176, 219
HapII CCGG 5 cut(s) 55, 102, 120, 150, 172
HhaI GCGC 1 cut(s) 32
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 4 cut(s) 108, 116, 137, 241
HpaII CCGG 5 cut(s) 55, 102, 120, 150, 172
HphI GGTGA 2 cut(s) 44, 134
Hpy166II GTNNAC 2 cut(s) 211, 326
Hpy188I TCNGA 3 cut(s) 163, 192, 413
Hpy8I GTNNAC 2 cut(s) 211, 326
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 4 cut(s) 134, 184, 206, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 2 cut(s) 112, 329
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 1 cut(s) 30
Lsp1109I GCAGC 2 cut(s) 19, 22
MaeII ACGT 1 cut(s) 213
MboII GAAGA 4 cut(s) 308, 359, 362, 406
MhlI GDGCHC 2 cut(s) 221, 328
MlsI TGGCCA 2 cut(s) 37, 168
MluCI AATT 2 cut(s) 333, 430
MluNI TGGCCA 2 cut(s) 37, 168
MlyI GAGTC 2 cut(s) 102, 110
MnlI CCTC 2 cut(s) 84, 187
Mox20I TGGCCA 2 cut(s) 37, 168
MroXI GAANNNNTTC 1 cut(s) 197
MscI TGGCCA 2 cut(s) 37, 168
MseI TTAA 1 cut(s) 429
Msp20I TGGCCA 2 cut(s) 37, 168
MspA1I CMGCKG 1 cut(s) 13
MspI CCGG 5 cut(s) 55, 102, 120, 150, 172
MspR9I CCNGG 2 cut(s) 103, 173
Mva1269I GAATGC 1 cut(s) 48
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 19
NciI CCSGG 2 cut(s) 103, 173
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 2 cut(s) 219, 220
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 137, 241
PkrI GCNGC 2 cut(s) 9, 12
PleI GAGTC 2 cut(s) 102, 110
PpsI GAGTC 2 cut(s) 102, 110
Ppu21I YACGTR 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 429
PspN4I GGNNCC 2 cut(s) 219, 220
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 3 cut(s) 174, 217, 218
PstI CTGCAG 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 2 cut(s) 8, 11
Sau96I GGNCC 3 cut(s) 174, 217, 218
SchI GAGTC 2 cut(s) 102, 110
ScrFI CCNGG 2 cut(s) 103, 173
SduI GDGCHC 2 cut(s) 221, 328
SetI ASST 7 cut(s) 15, 216, 228, 236, 325, 377, 423
SfcI CTRYAG 1 cut(s) 132
Sse9I AATT 2 cut(s) 333, 430
StyD4I CCNGG 2 cut(s) 101, 171
TaiI ACGT 1 cut(s) 216
TasI AATT 2 cut(s) 333, 430
TfiI GAWTC 2 cut(s) 137, 241
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseI GCWGC 2 cut(s) 7, 10
TspDTI ATGAA 3 cut(s) 17, 190, 360
VneI GTGCAC 1 cut(s) 324
VspI ATTAAT 1 cut(s) 429
XapI RAATTY 1 cut(s) 333
XmiI GTMKAC 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.