Rroxscaffold_2G00098280

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017700
Physical Location & Seq
Reverse (-)
19484846 .. 19488754
3909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098280.1

Sequence Viewer

Length: 573 bp
ATGTTTGATATACTAAGACCCATGAACTTACGACTATGCAATCATGAAACCCTTTGCATGCATGAACTTAGCCATTCAGAGCCATTAATCCATCATCAACATCAGCTTCATCACATTCATCGCCATCGAAACTACAACATGAAGCAGCAGCTGATAAGGCACATTGGCTCGTGGCCAAAGAACAGCATTCACCGGCTATCGCTTTGGTTTCCTCCAAACCACAAACATCCAGTTGTTTCCGGGGGACTCTTAGACTCCGGTGAGAACTCTGCAGAATCGTTGCTGGGCGGAGAGTTGTCTGATGGCCACCGGGCCTCGGTGCAAGTTCCGAAAGGGTTCATTGCAGTATACGTGGGCCCCGAGCTTCGCAGGTTTGTGATTCCCATGAGTTGCTTGTCGTCGCCAGATTTTAGGGTTTTGATGGATAGGGTGGAAGACGAGTATGGATTTGAGCAAGAAGGTGCACTTAGAATTCCTTGTGATGAAGAAGATTTTGAGCATATTTTGGTCAGGTGTCTGTCAAACCAAAAGAAGAATGATAAGAAAATCAGAAAACAGGTTTTGATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

190

Amino Acids

22.08

Weight (kDa)

7.29

Isoelectric Point (pI)

60.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 104 - 169 2e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36850
malus_domestica MD09G1166300.v1.1
prunus_persica Prupe.3G024000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149241
rosa_laevigata RLG00000020386
rosa_multiflora Rmu_sc0001615.1_g000008
rosa_roxburghii Rroxscaffold_2G00098280
rosa_rugosa Rorug02G0410000
rosa_samantha Rh2AG470600 Rh2BG482900 Rh2DG491900
rosa_wichuraiana Rw2G038270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 360
AccI GTMKAC 1 cut(s) 348
AciI CCGC 1 cut(s) 288
AcoI YGGCCR 2 cut(s) 173, 304
AcsI RAATTY 1 cut(s) 471
AfiI CCNNNNNNNGG 1 cut(s) 316
AluBI AGCT 3 cut(s) 106, 151, 364
AluI AGCT 3 cut(s) 106, 151, 364
Alw21I GWGCWC 1 cut(s) 466
Alw44I GTGCAC 1 cut(s) 462
AlwNI CAGNNNCTG 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 4 cut(s) 173, 304, 312, 355
ApaI GGGCCC 1 cut(s) 359
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 145, 148
ApoI RAATTY 1 cut(s) 471
AseI ATTAAT 2 cut(s) 86, 567
Asp700I GAANNNNTTC 1 cut(s) 335
AspS9I GGNCC 3 cut(s) 312, 355, 356
AsuC2I CCSGG 2 cut(s) 241, 311
AsuHPI GGTGA 2 cut(s) 182, 272
AvaI CYCGRG 1 cut(s) 359
BaeGI GKGCMC 2 cut(s) 359, 466
BalI TGGCCA 2 cut(s) 175, 306
BanII GRGCYC 1 cut(s) 359
BauI CACGAG 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 157, 160
BccI CCATC 4 cut(s) 99, 132, 296, 415
BcnI CCSGG 2 cut(s) 241, 311
BfmI CTRYAG 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 360
BisI GCNGC 2 cut(s) 146, 149
BlsI GCNGC 2 cut(s) 147, 150
Bme1390I CCNGG 2 cut(s) 241, 311
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 3 cut(s) 312, 355, 356
BmiI GGNNCC 2 cut(s) 357, 358
BmrFI CCNGG 2 cut(s) 241, 311
BpiI GAAGAC 1 cut(s) 441
BpuMI CCSGG 2 cut(s) 241, 311
BsaAI YACGTR 1 cut(s) 352
BsaJI CCNNGG 2 cut(s) 240, 315
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse118I RCCGGY 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 240, 315
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 230
BseSI GKGCMC 2 cut(s) 359, 466
BseXI GCAGC 2 cut(s) 157, 160
BseYI CCCAGC 1 cut(s) 283
BshFI GGCC 4 cut(s) 175, 306, 314, 357
BsiHKAI GWGCWC 1 cut(s) 466
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 4 cut(s) 193, 240, 258, 310
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 4 cut(s) 175, 306, 314, 357
BsoBI CYCGRG 1 cut(s) 359
Bsp120I GGGCCC 1 cut(s) 355
Bsp1286I GDGCHC 2 cut(s) 359, 466
BspACI CCGC 1 cut(s) 288
BspANI GGCC 4 cut(s) 175, 306, 314, 357
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 357, 358
BspMAI CTGCAG 1 cut(s) 274
BspMI ACCTGC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 192
BsrI ACTGG 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 240, 315
BssNAI GTATAC 1 cut(s) 349
BssSI CACGAG 1 cut(s) 169
Bst1107I GTATAC 1 cut(s) 349
Bst2BI CACGAG 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 4 cut(s) 14, 68, 250, 467
BstF5I GGATG 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 239, 309
BstSFI CTRYAG 1 cut(s) 270
BstSLI GKGCMC 2 cut(s) 359, 466
BstV1I GCAGC 2 cut(s) 157, 160
BstV2I GAAGAC 1 cut(s) 441
BstZ17I GTATAC 1 cut(s) 349
BsuRI GGCC 4 cut(s) 175, 306, 314, 357
BtgZI GCGATG 1 cut(s) 104
BtsCI GGATG 1 cut(s) 226
BveI ACCTGC 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 59
CaiI CAGNNNCTG 1 cut(s) 151
CciI TCATGA 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 192
Cfr13I GGNCC 3 cut(s) 312, 355, 356
CviAII CATG 6 cut(s) 22, 44, 58, 62, 139, 385
DdeI CTNAG 4 cut(s) 14, 68, 250, 467
EaeI YGGCCR 2 cut(s) 173, 304
EciI GGCGGA 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 359
Eco88I CYCGRG 1 cut(s) 359
EcoO109I RGGNCCY 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 471
EcoT22I ATGCAT 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 359
FaeI CATG 6 cut(s) 25, 47, 61, 65, 142, 388
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 1 cut(s) 258
FatI CATG 6 cut(s) 21, 43, 57, 61, 138, 384
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 2 cut(s) 146, 149
FokI GGATG 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 2 cut(s) 146, 149
GluI GCNGC 2 cut(s) 146, 149
GsaI CCCAGC 1 cut(s) 287
HaeIII GGCC 4 cut(s) 175, 306, 314, 357
HapII CCGG 4 cut(s) 193, 240, 258, 310
Hin1II CATG 6 cut(s) 25, 47, 61, 65, 142, 388
HinfI GANTC 4 cut(s) 246, 254, 275, 379
HpaII CCGG 4 cut(s) 193, 240, 258, 310
HphI GGTGA 2 cut(s) 182, 272
Hpy166II GTNNAC 2 cut(s) 349, 464
Hpy188I TCNGA 4 cut(s) 79, 301, 330, 551
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 349, 464
Hpy99I CGWCG 1 cut(s) 403
HpyAV CCTTC 1 cut(s) 452
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 7 cut(s) 39, 57, 61, 272, 322, 344, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 4 cut(s) 14, 68, 250, 467
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 6 cut(s) 25, 47, 61, 65, 142, 388
Lsp1109I GCAGC 2 cut(s) 157, 160
MaeII ACGT 1 cut(s) 351
MboII GAAGA 4 cut(s) 446, 497, 500, 544
MhlI GDGCHC 2 cut(s) 359, 466
MlsI TGGCCA 2 cut(s) 175, 306
MluCI AATT 2 cut(s) 471, 568
MluNI TGGCCA 2 cut(s) 175, 306
MlyI GAGTC 2 cut(s) 240, 248
MnlI CCTC 2 cut(s) 222, 325
Mox20I TGGCCA 2 cut(s) 175, 306
Mph1103I ATGCAT 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 335
MscI TGGCCA 2 cut(s) 175, 306
MseI TTAA 2 cut(s) 86, 567
Msp20I TGGCCA 2 cut(s) 175, 306
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 4 cut(s) 193, 240, 258, 310
MspR9I CCNGG 2 cut(s) 241, 311
Mva1269I GAATGC 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 157
NciI CCSGG 2 cut(s) 241, 311
NlaIII CATG 6 cut(s) 25, 47, 61, 65, 142, 388
NlaIV GGNNCC 2 cut(s) 357, 358
NsiI ATGCAT 1 cut(s) 63
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PagI TCATGA 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PctI GAATGC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 2 cut(s) 275, 379
PkrI GCNGC 2 cut(s) 147, 150
PleI GAGTC 2 cut(s) 240, 248
PpsI GAGTC 2 cut(s) 240, 248
Ppu21I YACGTR 1 cut(s) 352
PshBI ATTAAT 2 cut(s) 86, 567
PspFI CCCAGC 1 cut(s) 283
PspN4I GGNNCC 2 cut(s) 357, 358
PspOMI GGGCCC 1 cut(s) 355
PspPI GGNCC 3 cut(s) 312, 355, 356
PstI CTGCAG 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 151
SaqAI TTAA 2 cut(s) 86, 567
SatI GCNGC 2 cut(s) 146, 149
Sau96I GGNCC 3 cut(s) 312, 355, 356
SchI GAGTC 2 cut(s) 240, 248
ScrFI CCNGG 2 cut(s) 241, 311
SduI GDGCHC 2 cut(s) 359, 466
SetI ASST 8 cut(s) 108, 153, 354, 366, 374, 463, 515, 561
SfcI CTRYAG 1 cut(s) 270
SphI GCATGC 1 cut(s) 61
Sse9I AATT 2 cut(s) 471, 568
SsiI CCGC 1 cut(s) 288
StyD4I CCNGG 2 cut(s) 239, 309
TaiI ACGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 127
TasI AATT 2 cut(s) 471, 568
TfiI GAWTC 2 cut(s) 275, 379
Tru1I TTAA 2 cut(s) 86, 567
Tru9I TTAA 2 cut(s) 86, 567
TseI GCWGC 2 cut(s) 145, 148
TspDTI ATGAA 8 cut(s) 38, 60, 78, 98, 107, 155, 328, 498
VneI GTGCAC 1 cut(s) 462
VspI ATTAAT 2 cut(s) 86, 567
XapI RAATTY 1 cut(s) 471
XceI RCATGY 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 335
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.