FvH4_6g38470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014212
Physical Location & Seq
Reverse (-)
30391226 .. 30392693
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38470.t1

Sequence Viewer

Length: 555 bp
ATGAAAAGTGATTCCCAATACCCAGTATTGCAGTTGAAACCACCAGGTGTCATGGCCTCTAATAATTTGCATCAGCAAGGAAGCAAAAATGTTCAGACTGGACGGCCTCACAATCTTCTCACGTTAAGCTTGACCAAAGGTACAACCTTGGAAGAGTTTAAGTCTGGATTCCCATCTGAAGGTTTATCAACTGCATCCAATAGATGGTGGGGAAGCAATAGCCCAGATTGTGATGAGGGTATCCATGGAGAAGCAGATAACGCTGATGAAGAAAACAAGCATCAGTCCAACAAATTAGCAGATGATAGCGCAAGTTCAATTACAGGGAACCAAGAGAAATGTGGAAGTGAAAAACAAGAGAACAACATTGATCCCCAAGGGACAGATTTATTGGTCGCCGTGAGAAAAAGAGCAGTGGAAGAAGGGAAAAAGGCACGTAAGCTTGGTGTTTTCCGTGGATATGGTGCAAGGAAGCTAGGGAGAAAGGAGAGAACAATGCTTCTCCGAATATTCGAATCCTCATTGCCAAAAGATTGGATACCTGACTCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

185

Amino Acids

20.24

Weight (kDa)

7.77

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06500 AT1G06500 AT1G06500 AT1G06500
fragaria_vesca FvH4_6g38470 FvH4_6g38482
malus_domestica MD17G1137700.v1.1
prunus_persica Prupe.3G174900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151721
rosa_laevigata RLG00000020574
rosa_roxburghii Rroxscaffold_2G00096200
rosa_rugosa Rorug02G0428400
rosa_samantha Rh2AG489500 Rh2BG501900 Rh2CG475700 Rh2DG513000
rosa_wichuraiana Rw2G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 204
AclWI GGATC 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 198
AdeI CACNNNGTG 1 cut(s) 47
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 2 cut(s) 179, 204
AgsI TTSAA 2 cut(s) 37, 318
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 3 cut(s) 129, 442, 475
AluI AGCT 3 cut(s) 129, 442, 475
AlwI GGATC 1 cut(s) 365
AoxI GGCC 2 cut(s) 54, 104
AspLEI GCGC 1 cut(s) 311
AsuII TTCGAA 1 cut(s) 513
BccI CCATC 2 cut(s) 181, 198
BceAI ACGGC 2 cut(s) 119, 383
BciT130I CCWGG 1 cut(s) 45
BciVI GTATCC 2 cut(s) 251, 531
BfaI CTAG 1 cut(s) 476
BfuI GTATCC 2 cut(s) 251, 531
Bme1390I CCNGG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 3 cut(s) 79, 203, 289
BmuI ACTGGG 1 cut(s) 17
Bpu14I TTCGAA 1 cut(s) 513
BsaAI YACGTR 1 cut(s) 437
BsaBI GATNNNNATC 1 cut(s) 172
BsaJI CCNNGG 4 cut(s) 147, 244, 376, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 204
Bse1I ACTGG 2 cut(s) 23, 103
Bse3DI GCAATG 1 cut(s) 521
Bse8I GATNNNNATC 1 cut(s) 172
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 4 cut(s) 147, 244, 376, 454
BseGI GGATG 1 cut(s) 194
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 179, 204
BseMI GCAATG 1 cut(s) 521
BseNI ACTGG 2 cut(s) 23, 103
BseRI GAGGAG 1 cut(s) 538
BshFI GGCC 2 cut(s) 56, 106
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 2 cut(s) 179, 204
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 2 cut(s) 56, 106
Bsp119I TTCGAA 1 cut(s) 513
Bsp143I GATC 1 cut(s) 370
Bsp19I CCATGG 1 cut(s) 244
BspANI GGCC 2 cut(s) 56, 106
BspLI GGNNCC 1 cut(s) 329
BspPI GGATC 1 cut(s) 365
BspT104I TTCGAA 1 cut(s) 513
BsrDI GCAATG 1 cut(s) 521
BsrI ACTGG 2 cut(s) 23, 103
BssECI CCNNGG 4 cut(s) 147, 244, 376, 454
BssMI GATC 1 cut(s) 370
BssT1I CCWWGG 3 cut(s) 147, 244, 376
Bst2UI CCWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 513
BstDSI CCRYGG 2 cut(s) 244, 454
BstF5I GGATG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 1 cut(s) 373
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 534
BsuI GTATCC 2 cut(s) 251, 531
BsuRI GGCC 2 cut(s) 56, 106
BtgI CCRYGG 2 cut(s) 244, 454
BtsCI GGATG 1 cut(s) 194
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 1 cut(s) 420
CfoI GCGC 1 cut(s) 311
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 1 cut(s) 141
CviAII CATG 2 cut(s) 52, 245
CviJI RGCY 6 cut(s) 56, 106, 129, 222, 442, 475
CviKI_1 RGCY 6 cut(s) 56, 106, 129, 222, 442, 475
CviQI GTAC 1 cut(s) 141
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
DraIII CACNNNGTG 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 3 cut(s) 147, 244, 376
Eco57I CTGAAG 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 3 cut(s) 147, 244, 376
ErhI CCWWGG 3 cut(s) 147, 244, 376
FaeI CATG 2 cut(s) 55, 248
FaiI YATR 3 cut(s) 53, 246, 462
FaqI GGGAC 1 cut(s) 394
FatI CATG 2 cut(s) 51, 244
FokI GGATG 1 cut(s) 181
FspBI CTAG 1 cut(s) 476
GlaI GCGC 1 cut(s) 310
HaeIII GGCC 2 cut(s) 56, 106
HhaI GCGC 1 cut(s) 311
Hin1II CATG 2 cut(s) 55, 248
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HindIII AAGCTT 2 cut(s) 127, 440
HinfI GANTC 4 cut(s) 11, 168, 515, 545
Hpy188I TCNGA 3 cut(s) 96, 178, 506
Hpy188III TCNNGA 2 cut(s) 165, 552
HpyAV CCTTC 2 cut(s) 173, 416
HpyCH4IV ACGT 2 cut(s) 122, 436
HpyCH4V TGCA 4 cut(s) 31, 70, 194, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpySE526I ACGT 2 cut(s) 122, 436
Hsp92II CATG 2 cut(s) 55, 248
HspAI GCGC 1 cut(s) 309
Kzo9I GATC 1 cut(s) 370
LpnPI CCDG 7 cut(s) 30, 36, 57, 84, 150, 237, 309
LweI GCATC 3 cut(s) 79, 203, 289
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 1 cut(s) 476
MaeII ACGT 2 cut(s) 122, 436
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 4 cut(s) 107, 164, 281, 431
MluCI AATT 3 cut(s) 64, 293, 318
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 4 cut(s) 67, 117, 229, 529
MseI TTAA 2 cut(s) 125, 159
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 260
NcoI CCATGG 1 cut(s) 244
NdeII GATC 1 cut(s) 370
NlaIII CATG 2 cut(s) 55, 248
NlaIV GGNNCC 1 cut(s) 329
NspV TTCGAA 1 cut(s) 513
PfeI GAWTC 3 cut(s) 11, 168, 515
PflMI CCANNNNNTGG 1 cut(s) 204
PleI GAGTC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 539
Ppu21I YACGTR 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 329
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 125, 159
Sau3AI GATC 1 cut(s) 370
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 1 cut(s) 45
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 3 cut(s) 79, 203, 289
SfuI TTCGAA 1 cut(s) 513
Sse9I AATT 3 cut(s) 64, 293, 318
SspI AATATT 1 cut(s) 510
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 3 cut(s) 147, 244, 376
TaiI ACGT 2 cut(s) 125, 439
TaqI TCGA 1 cut(s) 513
TasI AATT 3 cut(s) 64, 293, 318
TfiI GAWTC 3 cut(s) 11, 168, 515
Tru1I TTAA 2 cut(s) 125, 159
Tru9I TTAA 2 cut(s) 125, 159
TscAI CASTG 1 cut(s) 420
TspDTI ATGAA 2 cut(s) 17, 282
TspGWI ACGGA 1 cut(s) 443
TspRI CASTG 1 cut(s) 420
Van91I CCANNNNNTGG 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.