Prupe.3G174900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014212
Physical Location & Seq
Reverse (-)
19185955 .. 19188316
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G174900.1

Sequence Viewer

Length: 525 bp
ATGGCGAAATCACAAGGCATCACAGTTTCTCCTCCTGCGCAGCAGCAAGGAAGCAAAAATGTTCAGACTGGACGTCCCCAGAATGTACTCACCTTAAGCTTGACTAAAGGAAATACAACCTATGATGAATTTAAACATGGATTCCCATCTGATGGCTTATCCACTGCATCCAATAAATGGTGGGGAAGCAATAGCCCTGATGGTTATGAGAGCGTCCGTGGAGAAGGAGCTGAGACTGATGAAGACAAGAAACATCAGTCGGAAAAATTGGCAGATGATGGTGCAAGTTCAACTGTAGTGGACAAAGAGAAATGTGAAAGTGGGAAAGAAGAGAACATTAGTACCCAAGGAACAGATTTACTGATGGCTGTGAGAAAAGGAAGTCTGGAAGAAGGGCAAAAAGCACTTAAGCTTGGTGTTTTCCGGGGTTATGGTGCAAAGAAGCTAGGCAGAAGAGAGAGGGCATTGCTTCTCCGAATATTCAAATCTTCAACACCAAAGCAATGGATTCATGAATTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

175

Amino Acids

19.02

Weight (kDa)

8.91

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06500 AT1G06500 AT1G06500 AT1G06500
fragaria_vesca FvH4_6g38470 FvH4_6g38482
malus_domestica MD17G1137700.v1.1
prunus_persica Prupe.3G174900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151721
rosa_laevigata RLG00000020574
rosa_roxburghii Rroxscaffold_2G00096200
rosa_rugosa Rorug02G0428400
rosa_samantha Rh2AG489500 Rh2BG501900 Rh2CG475700 Rh2DG513000
rosa_wichuraiana Rw2G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 76
Acc16I TGCGCA 1 cut(s) 39
AccB7I CCANNNNNTGG 2 cut(s) 152, 177
AcsI RAATTY 2 cut(s) 128, 515
AcyI GRCGYC 1 cut(s) 73
AfaI GTAC 2 cut(s) 87, 343
AfiI CCNNNNNNNGG 2 cut(s) 152, 177
AflII CTTAAG 2 cut(s) 94, 407
AgsI TTSAA 3 cut(s) 291, 484, 492
AhdI GACNNNNNGTC 1 cut(s) 72
AluBI AGCT 4 cut(s) 99, 230, 412, 445
AluI AGCT 4 cut(s) 99, 230, 412, 445
Alw26I GTCTC 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 40, 43
ApoI RAATTY 2 cut(s) 128, 515
AspLEI GCGC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 82
BaeI ACNNNNGTAYC 2 cut(s) 325, 358
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 52, 55
BccI CCATC 5 cut(s) 146, 154, 194, 272, 358
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 446
BfmI CTRYAG 1 cut(s) 294
BfrI CTTAAG 2 cut(s) 94, 407
BisI GCNGC 2 cut(s) 41, 44
BlsI GCNGC 2 cut(s) 42, 45
Bme1390I CCNGG 1 cut(s) 425
BmeRI GACNNNNNGTC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 425
BmsI GCATC 2 cut(s) 27, 176
BpiI GAAGAC 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 145
BsaHI GRCGYC 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 217, 346, 424
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 177
Bse1I ACTGG 1 cut(s) 73
Bse3DI GCAATG 2 cut(s) 464, 509
Bse8I GATNNNNATC 1 cut(s) 145
BseDI CCNNGG 3 cut(s) 217, 346, 424
BseGI GGATG 1 cut(s) 167
BseJI GATNNNNATC 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 152, 177
BseMI GCAATG 2 cut(s) 464, 509
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 52, 55
BsiSI CCGG 1 cut(s) 424
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 152, 177
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 511
BspTI CTTAAG 2 cut(s) 94, 407
BsrDI GCAATG 2 cut(s) 464, 509
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 3 cut(s) 217, 346, 424
BssNI GRCGYC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 346
Bst4CI ACNGT 2 cut(s) 25, 295
Bst6I CTCTTC 2 cut(s) 324, 448
BstACI GRCGYC 1 cut(s) 73
BstAFI CTTAAG 2 cut(s) 94, 407
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 423
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 52, 55
BstV2I GAAGAC 1 cut(s) 249
BstXI CCANNNNNNTGG 1 cut(s) 504
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
CciI TCATGA 1 cut(s) 511
CfoI GCGC 1 cut(s) 40
CseI GACGC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 86, 342
CspCI CAANNNNNGTGG 2 cut(s) 279, 314
CviAII CATG 2 cut(s) 137, 512
CviJI RGCY 7 cut(s) 99, 156, 195, 230, 368, 412, 445
CviKI_1 RGCY 7 cut(s) 99, 156, 195, 230, 368, 412, 445
CviQI GTAC 2 cut(s) 86, 342
DdeI CTNAG 1 cut(s) 231
DraI TTTAAA 1 cut(s) 133
DriI GACNNNNNGTC 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 324, 448
Eam1105I GACNNNNNGTC 1 cut(s) 72
EarI CTCTTC 2 cut(s) 324, 448
Eco130I CCWWGG 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 515
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 2 cut(s) 140, 515
FaiI YATR 5 cut(s) 123, 138, 207, 432, 513
FaqI GGGAC 1 cut(s) 60
FatI CATG 2 cut(s) 136, 511
Fnu4HI GCNGC 2 cut(s) 41, 44
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 2 cut(s) 41, 44
FspBI CTAG 1 cut(s) 446
FspI TGCGCA 1 cut(s) 39
GlaI GCGC 1 cut(s) 39
GluI GCNGC 2 cut(s) 41, 44
HapII CCGG 1 cut(s) 424
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 2 cut(s) 140, 515
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HindIII AAGCTT 2 cut(s) 97, 410
HinfI GANTC 2 cut(s) 141, 508
HpaII CCGG 1 cut(s) 424
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 4 cut(s) 66, 151, 262, 476
Hpy188III TCNNGA 2 cut(s) 386, 512
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 2 cut(s) 218, 386
HpyCH4III ACNGT 2 cut(s) 25, 295
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 3 cut(s) 167, 284, 437
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 73
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 2 cut(s) 140, 515
HspAI GCGC 1 cut(s) 38
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 6 cut(s) 48, 54, 92, 210, 371, 437
Lsp1109I GCAGC 2 cut(s) 52, 55
LweI GCATC 2 cut(s) 27, 176
MaeI CTAG 1 cut(s) 446
MaeII ACGT 1 cut(s) 73
MboII GAAGA 5 cut(s) 254, 341, 401, 465, 480
MluCI AATT 3 cut(s) 128, 266, 515
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 2 cut(s) 42, 453
MseI TTAA 4 cut(s) 95, 132, 408, 523
MspCI CTTAAG 2 cut(s) 94, 407
MspI CCGG 1 cut(s) 424
MspR9I CCNGG 1 cut(s) 425
NciI CCSGG 1 cut(s) 425
NlaIII CATG 2 cut(s) 140, 515
NsbI TGCGCA 1 cut(s) 39
PagI TCATGA 1 cut(s) 511
PfeI GAWTC 2 cut(s) 141, 508
PflMI CCANNNNNTGG 2 cut(s) 152, 177
PkrI GCNGC 2 cut(s) 42, 45
RsaI GTAC 2 cut(s) 87, 343
RsaNI GTAC 2 cut(s) 86, 342
SaqAI TTAA 4 cut(s) 95, 132, 408, 523
SatI GCNGC 2 cut(s) 41, 44
ScrFI CCNGG 1 cut(s) 425
SetI ASST 7 cut(s) 76, 95, 101, 122, 232, 414, 447
SfaNI GCATC 2 cut(s) 27, 176
SfcI CTRYAG 1 cut(s) 294
SmlI CTYRAG 2 cut(s) 94, 407
SmoI CTYRAG 2 cut(s) 94, 407
Sse9I AATT 3 cut(s) 128, 266, 515
SspI AATATT 1 cut(s) 480
SspMI CTAG 1 cut(s) 446
StyD4I CCNGG 1 cut(s) 423
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 2 cut(s) 25, 295
TaiI ACGT 1 cut(s) 76
TasI AATT 3 cut(s) 128, 266, 515
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 2 cut(s) 141, 508
Tru1I TTAA 4 cut(s) 95, 132, 408, 523
Tru9I TTAA 4 cut(s) 95, 132, 408, 523
TscAI CASTG 1 cut(s) 169
TseI GCWGC 2 cut(s) 40, 43
TspDTI ATGAA 3 cut(s) 141, 255, 500
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 169
Van91I CCANNNNNTGG 2 cut(s) 152, 177
Vha464I CTTAAG 2 cut(s) 94, 407
XapI RAATTY 2 cut(s) 128, 515
XspI CTAG 1 cut(s) 446
ZraI GACGTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.