MD17G1137700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014212
Physical Location & Seq
Forward (+)
12342238 .. 12344433
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1137700.v1.1.491

Sequence Viewer

Length: 693 bp
ATGAGAATAAAATACCAAGAAAACTCAAAATTGAGGTTGCATTTACCAAACGCATTCCCAGCTTTGACACTTACGAACCAGCCAAAGTCCGCAATTCCTTCTCTCTTCCCCGCTCCGCTCACATGCCGCCGCCTCGGCTATCGTGACTCTCAATACCCGAATAGTGAAATGGCGAAATCACATGGCAGCAATGTTTCTCCTCCTGCGCAACAGAAAGGAAGCAAGAATGTTCAGAGTGGACATTCCCAGAATATGCTCACCTCAACCTTGACTAAAGGAAATACAACCTATGATGAGTTTAAATATGGATTCCCATCTGATGGCTTATCAACTGCATCCAATAAATGGTGGGGAAGCAATAGCCCCGATGGTAATGAAGGCCTCCGTGGGAAAGGAGCTAAGACAGAGGAAGACAAAAAACCTCAGTCTGACAAATTGGCAGATGACAATGCAAGTTCAATAATGGTGGACACAGAGAAACCTGAAAGTGGGAAAGACGAGAACATTAGTCCCCAAGGAACAGATTTGTTGGTGTCTGTGAGAAGAAGAGCTGTGGAAGAAAACCAAAAAGCACTTAAGCTTGGTGCTTTCCGGGGTTATGGCGCAAAGAAGCTAGGCAGAAGAGAGAGGAAACTGCTTCTCCGAATATTCAAATCTTCGACTCCAAAACAATGGATACATGACTCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

231

Amino Acids

25.48

Weight (kDa)

9.79

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06500 AT1G06500 AT1G06500 AT1G06500
fragaria_vesca FvH4_6g38470 FvH4_6g38482
malus_domestica MD17G1137700.v1.1
prunus_persica Prupe.3G174900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151721
rosa_laevigata RLG00000020574
rosa_roxburghii Rroxscaffold_2G00096200
rosa_rugosa Rorug02G0428400
rosa_samantha Rh2AG489500 Rh2BG501900 Rh2CG475700 Rh2DG513000
rosa_wichuraiana Rw2G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 207
AccB7I CCANNNNNTGG 2 cut(s) 320, 345
AccBSI CCGCTC 2 cut(s) 113, 118
AciI CCGC 5 cut(s) 90, 111, 116, 127, 130
AfiI CCNNNNNNNGG 3 cut(s) 320, 345, 488
AflII CTTAAG 1 cut(s) 575
AgsI TTSAA 2 cut(s) 459, 652
AluBI AGCT 5 cut(s) 62, 398, 551, 580, 613
AluI AGCT 5 cut(s) 62, 398, 551, 580, 613
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 186
AspLEI GCGC 2 cut(s) 208, 605
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 198
BccI CCATC 3 cut(s) 314, 322, 362
BciVI GTATCC 1 cut(s) 669
BcnI CCSGG 1 cut(s) 593
BfaI CTAG 1 cut(s) 614
BfrI CTTAAG 1 cut(s) 575
BfuI GTATCC 1 cut(s) 669
BglI GCCNNNNNGGC 1 cut(s) 135
BisI GCNGC 3 cut(s) 127, 130, 187
BlsI GCNGC 3 cut(s) 128, 131, 188
Bme1390I CCNGG 1 cut(s) 593
BmrFI CCNGG 1 cut(s) 593
BmsI GCATC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 593
BsaBI GATNNNNATC 1 cut(s) 313
BsaJI CCNNGG 4 cut(s) 133, 385, 514, 592
BsaXI ACNNNNNCTCC 2 cut(s) 624, 654
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 345, 488
Bse3DI GCAATG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 313
BseDI CCNNGG 4 cut(s) 133, 385, 514, 592
BseGI GGATG 1 cut(s) 335
BseJI GATNNNNATC 1 cut(s) 313
BseLI CCNNNNNNNGG 3 cut(s) 320, 345, 488
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 437
BseRI GAGGAG 2 cut(s) 189, 676
BseXI GCAGC 1 cut(s) 198
BseYI CCCAGC 1 cut(s) 58
BshFI GGCC 1 cut(s) 381
BsiSI CCGG 1 cut(s) 592
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 3 cut(s) 320, 345, 488
BsmFI GGGAC 1 cut(s) 495
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 1 cut(s) 381
BspACI CCGC 5 cut(s) 90, 111, 116, 127, 130
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 436
BspQI GCTCTTC 1 cut(s) 541
BspTI CTTAAG 1 cut(s) 575
BsrBI CCGCTC 2 cut(s) 113, 118
BsrDI GCAATG 1 cut(s) 196
BssECI CCNNGG 4 cut(s) 133, 385, 514, 592
BssT1I CCWWGG 1 cut(s) 514
Bst6I CTCTTC 3 cut(s) 110, 541, 616
BstAFI CTTAAG 1 cut(s) 575
BstDEI CTNAG 3 cut(s) 399, 423, 690
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 1 cut(s) 335
BstHHI GCGC 2 cut(s) 208, 605
BstMWI GCNNNNNNNGC 2 cut(s) 59, 135
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 591
BstV1I GCAGC 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 417
BstXI CCANNNNNNTGG 1 cut(s) 672
BsuI GTATCC 1 cut(s) 669
BsuRI GGCC 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 1 cut(s) 335
CfoI GCGC 2 cut(s) 208, 605
CspCI CAANNNNNGTGG 2 cut(s) 447, 482
CviAII CATG 3 cut(s) 123, 182, 680
DdeI CTNAG 3 cut(s) 399, 423, 690
DraI TTTAAA 1 cut(s) 301
Eam1104I CTCTTC 3 cut(s) 110, 541, 616
EarI CTCTTC 3 cut(s) 110, 541, 616
Eco130I CCWWGG 1 cut(s) 514
Eco147I AGGCCT 1 cut(s) 381
EcoT14I CCWWGG 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 3 cut(s) 126, 185, 683
FaiI YATR 7 cut(s) 124, 183, 254, 291, 306, 600, 681
FaqI GGGAC 1 cut(s) 495
FatI CATG 3 cut(s) 122, 181, 679
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 127, 130, 187
FokI GGATG 1 cut(s) 322
Fsp4HI GCNGC 3 cut(s) 127, 130, 187
FspBI CTAG 1 cut(s) 614
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 2 cut(s) 207, 604
GluI GCNGC 3 cut(s) 127, 130, 187
GsaI CCCAGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 381
HapII CCGG 1 cut(s) 592
HhaI GCGC 2 cut(s) 208, 605
Hin1II CATG 3 cut(s) 126, 185, 683
Hin6I GCGC 2 cut(s) 206, 603
HinP1I GCGC 2 cut(s) 206, 603
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 4 cut(s) 146, 309, 661, 683
HpaII CCGG 1 cut(s) 592
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 239, 469
Hpy188I TCNGA 4 cut(s) 234, 319, 430, 644
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 2 cut(s) 239, 469
HpyAV CCTTC 2 cut(s) 108, 371
HpyCH4V TGCA 3 cut(s) 40, 335, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 135
HpyF3I CTNAG 3 cut(s) 399, 423, 690
Hsp92II CATG 3 cut(s) 126, 185, 683
HspAI GCGC 2 cut(s) 206, 603
LguI GCTCTTC 1 cut(s) 541
LmnI GCTCC 2 cut(s) 118, 395
LpnPI CCDG 6 cut(s) 72, 92, 216, 260, 495, 605
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 1 cut(s) 344
MaeI CTAG 1 cut(s) 614
MaeIII GTNAC 1 cut(s) 143
MbiI CCGCTC 2 cut(s) 113, 118
MboII GAAGA 7 cut(s) 97, 422, 555, 558, 569, 633, 648
MluCI AATT 3 cut(s) 29, 93, 434
MlyI GAGTC 3 cut(s) 140, 655, 677
MnlI CCTC 8 cut(s) 27, 143, 210, 271, 392, 400, 432, 621
MseI TTAA 2 cut(s) 300, 576
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 1 cut(s) 592
MspR9I CCNGG 1 cut(s) 593
Mva1269I GAATGC 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 59, 135
NciI CCSGG 1 cut(s) 593
NlaIII CATG 3 cut(s) 126, 185, 683
NmeAIII GCCGAG 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 143
NsbI TGCGCA 1 cut(s) 207
NspI RCATGY 1 cut(s) 126
PceI AGGCCT 1 cut(s) 381
PciSI GCTCTTC 1 cut(s) 541
PctI GAATGC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 309
PflMI CCANNNNNTGG 2 cut(s) 320, 345
PkrI GCNGC 3 cut(s) 128, 131, 188
PleI GAGTC 3 cut(s) 140, 655, 677
PpsI GAGTC 3 cut(s) 140, 655, 677
PspFI CCCAGC 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 541
SaqAI TTAA 2 cut(s) 300, 576
SatI GCNGC 3 cut(s) 127, 130, 187
SchI GAGTC 3 cut(s) 140, 655, 677
ScrFI CCNGG 1 cut(s) 593
SfaNI GCATC 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 3 cut(s) 29, 93, 434
SseBI AGGCCT 1 cut(s) 381
SsiI CCGC 5 cut(s) 90, 111, 116, 127, 130
SspI AATATT 1 cut(s) 648
SspMI CTAG 1 cut(s) 614
StuI AGGCCT 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 591
StyI CCWWGG 1 cut(s) 514
TaqI TCGA 1 cut(s) 659
TasI AATT 3 cut(s) 29, 93, 434
TauI GCSGC 2 cut(s) 129, 132
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 2 cut(s) 300, 576
Tru9I TTAA 2 cut(s) 300, 576
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 186
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 390
TspGWI ACGGA 1 cut(s) 374
Van91I CCANNNNNTGG 2 cut(s) 320, 345
Vha464I CTTAAG 1 cut(s) 575
XceI RCATGY 1 cut(s) 126
XspI CTAG 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.