Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014212

Physical Location & Seq

Genomic Coordinates Reverse (-)

30419490 .. 30421661

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38482.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGTTCAACATATACCTCATAAACCAGATTCTAACAGCAGCCACAACAAGTCAACAACAACAGCCCAATTTGATTCCCAACACCCAGTAATGCAGTCGAAACCACAAGGTGTCATGGCCTCTAATAATTTGCAGCAGCAAGGAAGCAAAAATGTTCAGACTGGACGGCCTCACAATCTTCTCACGTTAAGCTTGACCAAAGGTACAACCTTGGAAGAATTGAAAAATGGATTCCCATCTGAAGGTTTATCAACTGCATCCAATAGATGGTGGGGAAGCAATAGCCTTGATTGTGATAAGGGCATCCGTGGAGAAGCAGCTAAGGCTGATGAAGAAAACAAGCATCAGTCCAACAAACTAGCGGATGGCGCAAGTTCAATTGCAGAAAACAAAGAGAAATGTGAAAGTGAAAAAGAAGAGAACAGCATTGATCCCCAAGGGACAGATTTATTGGTGGCCGTGAGAAAACAAGCGGTGGAAGAAGGGAAAAAGGCACTTAAGCTTGGTGTATTCCGTGGATATGGTGCAAAGAAGCTAGGGAGAAAGGAGAGGACATTGCTCCTCCGAATATTCAAATCGTCATTGCCAAAAGATTGGATACCTGACTCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWP-RK

Protein Analysis

205

Amino Acids

22.38

Weight (kDa)

9.15

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06500 AT1G06500 AT1G06500 AT1G06500
fragaria_vesca	FvH4_6g38470 FvH4_6g38482
malus_domestica	MD17G1137700.v1.1
prunus_persica	Prupe.3G174900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151721
rosa_laevigata	RLG00000020574
rosa_roxburghii	Rroxscaffold_2G00096200
rosa_rugosa	Rorug02G0428400
rosa_samantha	Rh2AG489500 Rh2BG501900 Rh2CG475700 Rh2DG513000
rosa_wichuraiana	Rw2G040120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	267
AciI	CCGC	2 cut(s)	362, 473
AclWI	GGATC	1 cut(s)	425
AcoI	YGGCCR	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	2 cut(s)	242, 267
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	8, 223, 378, 574
AluBI	AGCT	4 cut(s)	192, 320, 502, 535
AluI	AGCT	4 cut(s)	192, 320, 502, 535
AlwI	GGATC	1 cut(s)	425
AoxI	GGCC	3 cut(s)	117, 167, 456
ApeKI	GCWGC	4 cut(s)	39, 133, 136, 317
AspLEI	GCGC	1 cut(s)	371
BbvI	GCAGC	4 cut(s)	51, 145, 148, 329
BccI	CCATC	3 cut(s)	244, 261, 359
BceAI	ACGGC	2 cut(s)	182, 443
BciVI	GTATCC	1 cut(s)	591
BfaI	CTAG	2 cut(s)	359, 536
BfrI	CTTAAG	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	591
BisI	GCNGC	4 cut(s)	40, 134, 137, 318
BlsI	GCNGC	4 cut(s)	41, 135, 138, 319
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	3 cut(s)	266, 312, 352
BmuI	ACTGGG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	235
BsaJI	CCNNGG	4 cut(s)	210, 307, 436, 514
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 267
Bse1I	ACTGG	2 cut(s)	86, 166
Bse3DI	GCAATG	2 cut(s)	554, 581
Bse8I	GATNNNNATC	1 cut(s)	235
BseDI	CCNNGG	4 cut(s)	210, 307, 436, 514
BseGI	GGATG	3 cut(s)	257, 303, 370
BseJI	GATNNNNATC	1 cut(s)	235
BseLI	CCNNNNNNNGG	2 cut(s)	242, 267
BseMI	GCAATG	2 cut(s)	554, 581
BseNI	ACTGG	2 cut(s)	86, 166
BseRI	GAGGAG	2 cut(s)	551, 598
BseXI	GCAGC	4 cut(s)	51, 145, 148, 329
BshFI	GGCC	3 cut(s)	119, 169, 458
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	242, 267
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	119, 169, 458
Bsp143I	GATC	1 cut(s)	430
BspACI	CCGC	2 cut(s)	362, 473
BspANI	GGCC	3 cut(s)	119, 169, 458
BspPI	GGATC	1 cut(s)	425
BspTI	CTTAAG	1 cut(s)	497
BsrDI	GCAATG	2 cut(s)	554, 581
BsrI	ACTGG	2 cut(s)	86, 166
BssECI	CCNNGG	4 cut(s)	210, 307, 436, 514
BssMI	GATC	1 cut(s)	430
BssT1I	CCWWGG	2 cut(s)	210, 436
Bst6I	CTCTTC	1 cut(s)	411
BstAFI	CTTAAG	1 cut(s)	497
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	2 cut(s)	307, 514
BstF5I	GGATG	3 cut(s)	257, 303, 370
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 368
BstV1I	GCAGC	4 cut(s)	51, 145, 148, 329
BstXI	CCANNNNNNTGG	1 cut(s)	594
BsuI	GTATCC	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	119, 169, 458
BtgI	CCRYGG	2 cut(s)	307, 514
BtsCI	GGATG	3 cut(s)	257, 303, 370
CfoI	GCGC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	1 cut(s)	115
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
DraIII	CACNNNGTG	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	2 cut(s)	210, 436
Eco57I	CTGAAG	1 cut(s)	261
EcoT14I	CCWWGG	2 cut(s)	210, 436
ErhI	CCWWGG	2 cut(s)	210, 436
FaeI	CATG	1 cut(s)	118
FaiI	YATR	5 cut(s)	12, 14, 21, 116, 522
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	40, 134, 137, 318
FokI	GGATG	3 cut(s)	244, 290, 377
Fsp4HI	GCNGC	4 cut(s)	40, 134, 137, 318
FspBI	CTAG	2 cut(s)	359, 536
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	4 cut(s)	40, 134, 137, 318
HaeIII	GGCC	3 cut(s)	119, 169, 458
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HindIII	AAGCTT	2 cut(s)	190, 500
HinfI	GANTC	4 cut(s)	29, 74, 231, 605
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	3 cut(s)	159, 241, 566
Hpy188III	TCNNGA	1 cut(s)	612
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	236, 476
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	5 cut(s)	94, 133, 257, 383, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 368
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	564
LpnPI	CCDG	3 cut(s)	39, 99, 147
Lsp1109I	GCAGC	4 cut(s)	51, 145, 148, 329
LweI	GCATC	3 cut(s)	266, 312, 352
MaeI	CTAG	2 cut(s)	359, 536
MaeII	ACGT	1 cut(s)	185
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	5 cut(s)	170, 227, 344, 428, 491
MfeI	CAATTG	1 cut(s)	378
MluCI	AATT	4 cut(s)	68, 127, 218, 378
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	5 cut(s)	27, 130, 180, 543, 572
MseI	TTAA	2 cut(s)	188, 498
MspCI	CTTAAG	1 cut(s)	497
MunI	CAATTG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	323, 368
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	1 cut(s)	118
PfeI	GAWTC	3 cut(s)	29, 74, 231
PflMI	CCANNNNNTGG	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	41, 135, 138, 319
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	188, 498
SatI	GCNGC	4 cut(s)	40, 134, 137, 318
Sau3AI	GATC	1 cut(s)	430
SchI	GAGTC	1 cut(s)	599
SfaNI	GCATC	3 cut(s)	266, 312, 352
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	4 cut(s)	68, 127, 218, 378
SsiI	CCGC	2 cut(s)	362, 473
SspI	AATATT	1 cut(s)	570
SspMI	CTAG	2 cut(s)	359, 536
StyI	CCWWGG	2 cut(s)	210, 436
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	98
TasI	AATT	4 cut(s)	68, 127, 218, 378
TfiI	GAWTC	3 cut(s)	29, 74, 231
Tru1I	TTAA	2 cut(s)	188, 498
Tru9I	TTAA	2 cut(s)	188, 498
TseI	GCWGC	4 cut(s)	39, 133, 136, 317
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	2 cut(s)	296, 503
Van91I	CCANNNNNTGG	1 cut(s)	267
Vha464I	CTTAAG	1 cut(s)	497
XspI	CTAG	2 cut(s)	359, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.