RLG00000020574

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014212
Physical Location & Seq
Reverse (-)
66389923 .. 66390450
528 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020574

Sequence Viewer

Length: 528 bp
ATGCAGTCGAAACCACAAGGTGTCATGGCTTCTAATAATTTGCAGCAGCAAGGAAGCAAAAATGTTCAGACTGGACGGCCCCAAACTATTCTCACCTTAAGCTTGACTACAGGTACAACCTTGGAAGAGTTTAAATATGGATTCCCATCTGAAGGTTTATCAACTGCATCCAATAGATGGTGGGGAAGCAATAGCCCTAATTGTGATGAGGGCATCCGTGGAGAAGCAGCTAAGAGTGATGAAGACAACAAACATCAGTCTGTCAAATTAGCATATGATAGTGCAAGTTCAATTACAGGGAACAAAGAGAAATGTGAAAGTGAAAAAGAAGAGAGCAGCATTGATCCACAAGGGACAGATTTATTGGTGGCCGTGAGAAAAAGAGCGGTGGAAGAAGGGAAACAGGCACTTAAGCTTGGTGCATTCCATGGATATGGTGCAAAGAAGCTAGGGAGAAAGGAGAGGACATTGCTTCTCCGAATATTCAAATCTTCAATGCCAAAAGATTGGATACCTGACTCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

176

Amino Acids

19.17

Weight (kDa)

8.81

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06500 AT1G06500 AT1G06500 AT1G06500
fragaria_vesca FvH4_6g38470 FvH4_6g38482
malus_domestica MD17G1137700.v1.1
prunus_persica Prupe.3G174900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151721
rosa_laevigata RLG00000020574
rosa_roxburghii Rroxscaffold_2G00096200
rosa_rugosa Rorug02G0428400
rosa_samantha Rh2AG489500 Rh2BG501900 Rh2CG475700 Rh2DG513000
rosa_wichuraiana Rw2G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 177
AccBSI CCGCTC 1 cut(s) 386
AciI CCGC 1 cut(s) 386
AclWI GGATC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 369
AcuI CTGAAG 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 20
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 152, 177
AflII CTTAAG 2 cut(s) 97, 410
AgsI TTSAA 3 cut(s) 291, 487, 495
AluBI AGCT 4 cut(s) 102, 230, 415, 448
AluI AGCT 4 cut(s) 102, 230, 415, 448
AlwI GGATC 1 cut(s) 338
AoxI GGCC 2 cut(s) 77, 369
ApeKI GCWGC 4 cut(s) 43, 46, 227, 336
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 4 cut(s) 55, 58, 239, 348
BccI CCATC 2 cut(s) 154, 171
BceAI ACGGC 2 cut(s) 92, 356
BciVI GTATCC 1 cut(s) 504
BfaI CTAG 1 cut(s) 449
BfmI CTRYAG 1 cut(s) 108
BfrI CTTAAG 2 cut(s) 97, 410
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 4 cut(s) 44, 47, 228, 337
BlsI GCNGC 4 cut(s) 45, 48, 229, 338
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 80
BmsI GCATC 2 cut(s) 176, 222
BpiI GAAGAC 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 145
BsaJI CCNNGG 3 cut(s) 120, 217, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 177
Bse1I ACTGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 467
Bse8I GATNNNNATC 1 cut(s) 145
BseDI CCNNGG 3 cut(s) 120, 217, 427
BseGI GGATG 2 cut(s) 167, 213
BseJI GATNNNNATC 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 152, 177
BseMI GCAATG 1 cut(s) 467
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 511
BseXI GCAGC 4 cut(s) 55, 58, 239, 348
BshFI GGCC 2 cut(s) 79, 371
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 2 cut(s) 152, 177
BsmFI GGGAC 1 cut(s) 367
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 2 cut(s) 79, 371
Bsp143I GATC 1 cut(s) 343
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 1 cut(s) 386
BspANI GGCC 2 cut(s) 79, 371
BspLI GGNNCC 1 cut(s) 80
BspPI GGATC 1 cut(s) 338
BspTI CTTAAG 2 cut(s) 97, 410
BsrBI CCGCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 467
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 3 cut(s) 120, 217, 427
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 2 cut(s) 120, 427
Bst6I CTCTTC 2 cut(s) 120, 324
BstAFI CTTAAG 2 cut(s) 97, 410
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 2 cut(s) 217, 427
BstF5I GGATG 2 cut(s) 167, 213
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 4 cut(s) 55, 58, 239, 348
BstV2I GAAGAC 1 cut(s) 249
BstXI CCANNNNNNTGG 2 cut(s) 434, 507
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 2 cut(s) 79, 371
BtgI CCRYGG 2 cut(s) 217, 427
BtsCI GGATG 2 cut(s) 167, 213
Cfr13I GGNCC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 25, 428
CviJI RGCY 8 cut(s) 29, 79, 102, 195, 230, 371, 415, 448
CviKI_1 RGCY 8 cut(s) 29, 79, 102, 195, 230, 371, 415, 448
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
DraI TTTAAA 1 cut(s) 133
DraIII CACNNNGTG 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 120, 324
EarI CTCTTC 2 cut(s) 120, 324
Eco130I CCWWGG 2 cut(s) 120, 427
Eco57I CTGAAG 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 120, 427
ErhI CCWWGG 2 cut(s) 120, 427
FaeI CATG 2 cut(s) 28, 431
FaiI YATR 6 cut(s) 26, 138, 274, 276, 429, 435
FaqI GGGAC 1 cut(s) 367
FatI CATG 2 cut(s) 24, 427
FauNDI CATATG 1 cut(s) 274
Fnu4HI GCNGC 4 cut(s) 44, 47, 228, 337
FokI GGATG 2 cut(s) 154, 200
Fsp4HI GCNGC 4 cut(s) 44, 47, 228, 337
FspBI CTAG 1 cut(s) 449
GluI GCNGC 4 cut(s) 44, 47, 228, 337
HaeIII GGCC 2 cut(s) 79, 371
Hin1II CATG 2 cut(s) 28, 431
HindIII AAGCTT 2 cut(s) 100, 413
HinfI GANTC 2 cut(s) 141, 518
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 3 cut(s) 69, 151, 479
HpyAV CCTTC 2 cut(s) 146, 389
HpyCH4V TGCA 6 cut(s) 4, 43, 167, 284, 422, 440
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 2 cut(s) 28, 431
Kzo9I GATC 1 cut(s) 343
LpnPI CCDG 4 cut(s) 57, 96, 282, 389
Lsp1109I GCAGC 4 cut(s) 55, 58, 239, 348
LweI GCATC 2 cut(s) 176, 222
MaeI CTAG 1 cut(s) 449
MalI GATC 1 cut(s) 345
MbiI CCGCTC 1 cut(s) 386
MboI GATC 1 cut(s) 343
MboII GAAGA 5 cut(s) 137, 254, 341, 404, 483
MluCI AATT 4 cut(s) 37, 199, 266, 291
MlyI GAGTC 1 cut(s) 512
MnlI CCTC 2 cut(s) 202, 456
MseI TTAA 4 cut(s) 98, 132, 411, 526
MslI CAYNNNNRTG 1 cut(s) 432
MspCI CTTAAG 2 cut(s) 97, 410
Mva1269I GAATGC 1 cut(s) 422
NcoI CCATGG 1 cut(s) 427
NdeI CATATG 1 cut(s) 274
NdeII GATC 1 cut(s) 343
NlaIII CATG 2 cut(s) 28, 431
NlaIV GGNNCC 1 cut(s) 80
PctI GAATGC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 177
PkrI GCNGC 4 cut(s) 45, 48, 229, 338
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 78
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 432
SaqAI TTAA 4 cut(s) 98, 132, 411, 526
SatI GCNGC 4 cut(s) 44, 47, 228, 337
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 1 cut(s) 512
SfaNI GCATC 2 cut(s) 176, 222
SfcI CTRYAG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 2 cut(s) 97, 410
SmoI CTYRAG 2 cut(s) 97, 410
Sse9I AATT 4 cut(s) 37, 199, 266, 291
SsiI CCGC 1 cut(s) 386
SspI AATATT 1 cut(s) 483
SspMI CTAG 1 cut(s) 449
StyI CCWWGG 2 cut(s) 120, 427
TaqI TCGA 1 cut(s) 8
TasI AATT 4 cut(s) 37, 199, 266, 291
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 4 cut(s) 98, 132, 411, 526
Tru9I TTAA 4 cut(s) 98, 132, 411, 526
TseI GCWGC 4 cut(s) 43, 46, 227, 336
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 206
Van91I CCANNNNNTGG 1 cut(s) 177
Vha464I CTTAAG 2 cut(s) 97, 410
XspI CTAG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.