Rh2CG475700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014212
Physical Location & Seq
Reverse (-)
64096190 .. 64098714
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG475700.1

Sequence Viewer

Length: 618 bp
ATGTTCCTGGGGAAACTATTTTTCGTCATTGTTCTCTTTCATATTCTTCGCCCTTCATTTTTAAATGCAGTGGCTCCCCAACACCCAGTAATGCAGTCGAAACCACAAGGTGTCATGGCTTCTAATAATTTGCAGCAGCAAGGAAGCAAAAATGTTCAGACTGGACGGCCCCAAAATATTCTCACCTTAAGCTTGACTACAGGTACAACCTTGGAAGAGTTTAAATTTGGATTCCCATCTGAAGGTTTATCAACTGCATCCAATAGATGGTGGGGAAGCAATAGCCCTAATTGTGATGAGGGCGTCCGTGGAGAAGCAGCTAAGAGTGATGAAGCCAACAAACATCAGTCTGTCAAATTAGCAGATGATAGTGCAAGTTCAATTACAGGGAACAAAGAGAAATGTGAAAGTGAAAAAGAAAAGAGCAGCATTGATCCACAAGGGACAGATTTATTGGTGGCCGTGAGAAAAAGAGCAGTGGAAGAAGGGAAACAGGCACTTAAGCTTGGTGCATTCCGTGGATATGGTGCAAAGAAGCTAGGGAGAAAGGAGAGGACATTGCTTCTCCGAATATTCAAATCTTCAATGCCAAAAGATTGGATACCTGACTCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

205

Amino Acids

22.51

Weight (kDa)

9.57

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06500 AT1G06500 AT1G06500 AT1G06500
fragaria_vesca FvH4_6g38470 FvH4_6g38482
malus_domestica MD17G1137700.v1.1
prunus_persica Prupe.3G174900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151721
rosa_laevigata RLG00000020574
rosa_roxburghii Rroxscaffold_2G00096200
rosa_rugosa Rorug02G0428400
rosa_samantha Rh2AG489500 Rh2BG501900 Rh2CG475700 Rh2DG513000
rosa_wichuraiana Rw2G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 267
AclWI GGATC 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 2 cut(s) 242, 267
AflII CTTAAG 2 cut(s) 187, 500
AgsI TTSAA 3 cut(s) 381, 577, 585
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 4 cut(s) 192, 320, 505, 538
AluI AGCT 4 cut(s) 192, 320, 505, 538
AlwI GGATC 1 cut(s) 428
AoxI GGCC 2 cut(s) 167, 459
ApeKI GCWGC 4 cut(s) 133, 136, 317, 426
ApoI RAATTY 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 175
BbvI GCAGC 4 cut(s) 145, 148, 329, 438
BccI CCATC 2 cut(s) 244, 261
BceAI ACGGC 2 cut(s) 182, 446
BciT130I CCWGG 1 cut(s) 8
BciVI GTATCC 1 cut(s) 594
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 198
BfrI CTTAAG 2 cut(s) 187, 500
BfuI GTATCC 1 cut(s) 594
BisI GCNGC 4 cut(s) 134, 137, 318, 427
BlsI GCNGC 4 cut(s) 135, 138, 319, 428
Bme1390I CCNGG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 2 cut(s) 75, 170
BmrFI CCNGG 1 cut(s) 8
BmrI ACTGGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 266
BmuI ACTGGG 1 cut(s) 80
BsaBI GATNNNNATC 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 4 cut(s) 7, 210, 307, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 267
Bse1I ACTGG 2 cut(s) 86, 166
Bse3DI GCAATG 1 cut(s) 557
Bse8I GATNNNNATC 1 cut(s) 235
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 4 cut(s) 7, 210, 307, 517
BseGI GGATG 1 cut(s) 257
BseJI GATNNNNATC 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 242, 267
BseMI GCAATG 1 cut(s) 557
BseNI ACTGG 2 cut(s) 86, 166
BseRI GAGGAG 1 cut(s) 601
BseXI GCAGC 4 cut(s) 145, 148, 329, 438
BshFI GGCC 2 cut(s) 169, 461
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 2 cut(s) 242, 267
BsmFI GGGAC 1 cut(s) 457
BsmI GAATGC 1 cut(s) 512
BsnI GGCC 2 cut(s) 169, 461
Bsp143I GATC 1 cut(s) 433
BspANI GGCC 2 cut(s) 169, 461
BspLI GGNNCC 2 cut(s) 75, 170
BspPI GGATC 1 cut(s) 428
BspTI CTTAAG 2 cut(s) 187, 500
BsrDI GCAATG 1 cut(s) 557
BsrI ACTGG 2 cut(s) 86, 166
BssECI CCNNGG 4 cut(s) 7, 210, 307, 517
BssMI GATC 1 cut(s) 433
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 303
BstAFI CTTAAG 2 cut(s) 187, 500
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 2 cut(s) 307, 517
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 1 cut(s) 436
BstMBI GATC 1 cut(s) 433
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 4 cut(s) 145, 148, 329, 438
BstXI CCANNNNNNTGG 1 cut(s) 597
BsuI GTATCC 1 cut(s) 594
BsuRI GGCC 2 cut(s) 169, 461
BtgI CCRYGG 2 cut(s) 307, 517
BtsCI GGATG 1 cut(s) 257
BtsI GCAGTG 2 cut(s) 75, 483
BtsIMutI CAGTG 2 cut(s) 75, 483
Cfr13I GGNCC 1 cut(s) 168
CseI GACGC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 204
CviAII CATG 1 cut(s) 115
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
DraI TTTAAA 2 cut(s) 63, 223
DraIII CACNNNGTG 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 118
FaiI YATR 3 cut(s) 42, 116, 525
FaqI GGGAC 1 cut(s) 457
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 134, 137, 318, 427
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 4 cut(s) 134, 137, 318, 427
FspBI CTAG 1 cut(s) 539
GluI GCNGC 4 cut(s) 134, 137, 318, 427
HaeIII GGCC 2 cut(s) 169, 461
HgaI GACGC 1 cut(s) 292
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 1 cut(s) 118
HindIII AAGCTT 2 cut(s) 190, 503
HinfI GANTC 2 cut(s) 231, 608
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 3 cut(s) 159, 241, 569
HpyAV CCTTC 3 cut(s) 63, 236, 479
HpyCH4V TGCA 7 cut(s) 68, 94, 133, 257, 374, 512, 530
HpyF3I CTNAG 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 6 cut(s) 20, 99, 147, 186, 372, 479
Lsp1109I GCAGC 4 cut(s) 145, 148, 329, 438
LweI GCATC 1 cut(s) 266
MaeI CTAG 1 cut(s) 539
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 4 cut(s) 38, 227, 494, 573
MluCI AATT 5 cut(s) 127, 224, 289, 356, 381
MlyI GAGTC 1 cut(s) 602
MnlI CCTC 2 cut(s) 292, 546
MseI TTAA 5 cut(s) 62, 188, 222, 501, 616
MspCI CTTAAG 2 cut(s) 187, 500
MspR9I CCNGG 1 cut(s) 8
Mva1269I GAATGC 1 cut(s) 512
MvaI CCWGG 1 cut(s) 8
NdeII GATC 1 cut(s) 433
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 2 cut(s) 75, 170
PctI GAATGC 1 cut(s) 512
PfeI GAWTC 1 cut(s) 231
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 4 cut(s) 135, 138, 319, 428
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 75, 170
PspPI GGNCC 1 cut(s) 168
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SaqAI TTAA 5 cut(s) 62, 188, 222, 501, 616
SatI GCNGC 4 cut(s) 134, 137, 318, 427
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 1 cut(s) 168
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 1 cut(s) 8
SfaNI GCATC 1 cut(s) 266
SfcI CTRYAG 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 187, 500
SmoI CTYRAG 2 cut(s) 187, 500
Sse9I AATT 5 cut(s) 127, 224, 289, 356, 381
SspI AATATT 2 cut(s) 178, 573
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 1 cut(s) 210
TaqI TCGA 1 cut(s) 98
TasI AATT 5 cut(s) 127, 224, 289, 356, 381
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 5 cut(s) 62, 188, 222, 501, 616
Tru9I TTAA 5 cut(s) 62, 188, 222, 501, 616
TscAI CASTG 2 cut(s) 75, 483
TseI GCWGC 4 cut(s) 133, 136, 317, 426
TspDTI ATGAA 3 cut(s) 29, 45, 345
TspGWI ACGGA 2 cut(s) 296, 506
TspRI CASTG 2 cut(s) 75, 483
Van91I CCANNNNNTGG 1 cut(s) 267
Vha464I CTTAAG 2 cut(s) 187, 500
XapI RAATTY 1 cut(s) 224
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.