FvH4_6g40460

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017345
Physical Location & Seq
Forward (+)
31983625 .. 31986849
3225 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40460.t1

Sequence Viewer

Length: 1074 bp
ATGGCTTCCAAGAAAGGCGACTACAACCCTCACTCCGGCGACGGCGCTAGCCCCGGCAAGATATTCATCGGAGGCTTGGCCAAGAACACCACCCTTGAGACGTTCATTAAGTATTTCGAGAAGTATGGGGAGATAATCGACTCTGTGATCATGAAGGACCGCCAAACGGGGCTTCCGAGAGGTTTCGGCTTCATAACCTATTCGGATCCTTCTGTTGTTGACCAGGTTATTCAAGAGACTCACGTCATCAATGACAAGCAGGTTGAGATAAAGAGAACCATTCCGAAAGGTGCTGGTCAAGCCAACGATTTCAAGACTAAGAAAGTTTTTGTAGGCGGGATTCCGAGAACTGTTACTGAAGATGAGTTGAAAGATTTCTTTTCAAAGTTTGGTAATGTGGAGGAGCATCAGATCATACGTGAGCATGCCACAAACCGCTCTCGAGGGTTTGGATTTGTTGTATTCGAGAGCGAAAAAGTTGTTGATAATTTGCTGGCTAATGGAAATAAAATTGATATGGATGGAACACAGGTTGAGATCAAGAAGGCTGAACCGAAGAAGGCCTCAAACCCTGCTCATGTTCCTGCCTTCAGTAGAGACTCTAGGCCACACCCATACCCTGCTAGTTATGATTTAGTCGGCAACACATATAGTGGTTATGGCCCTGGTGGTTATGGCCTTCCTTCTTATGGCCCTCCTTCCTATAGGTCACATGGAGAATTTGGCAGTAGGTTTGATGATTACAATGGTTATTCAGATGCTAATGATGCTGGTGTTGGTTTTGAGGGTATCAGAGGTGGTCCTTTTCCTGGTTATCATGGAGATTCTTCATTTGGGTATCCTAGTAGATTTTCCTCCTATCGTGGAGGGCTTGGTGGTGGTGGGGGATATGGTGGTAGCGGGTTAGGTGCATATGGGCGTGAAGCTAGGGGCTATGGAAGTTATGCTGGGTCAGGCTCGGGTGATGGTTACGATTCAGGACCTGGTGCTAGTTATGAAGGACCACGAGGCATGTATGGAGCTACTAGGGCAGGTTATGGCGGCAGTAGTCGTTACCACCCTTACGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

358

Amino Acids

38.27

Weight (kDa)

7.79

Isoelectric Point (pI)

24.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 21 - 81 2.6e-12 RNA recognition motif
RRM_7 PF16367 107 - 170 2.5e-10 RNA recognition motif
RRM_1 PF00076 109 - 178 7.5e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g40460
malus_domestica MD17G1118700.v1.1 MD17G1277100.v1.1
prunus_persica Prupe.3G195500_v2.0.a1
pyrus_communis pycom17g10900
rosa_chinensis RchiOBHm_Chr2g0155691
rosa_multiflora Rmu_co8436359.1_g000001
rosa_roxburghii Rroxscaffold_2G00093550
rosa_rugosa Rorug02G0449400
rosa_samantha Rh2AG515300 Rh2CG500200 Rh2DG535200
rosa_wichuraiana Rw2G042350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 250, 1022
AccBSI CCGCTC 1 cut(s) 438
AciI CCGC 5 cut(s) 160, 336, 436, 900, 1041
AclWI GGATC 2 cut(s) 200, 213
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 1 cut(s) 719
AcuI CTGAAG 2 cut(s) 378, 574
AfiI CCNNNNNNNGG 4 cut(s) 35, 166, 689, 809
AgsI TTSAA 4 cut(s) 233, 313, 370, 384
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 4 cut(s) 222, 664, 808, 982
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 2 cut(s) 926, 1022
AluI AGCT 2 cut(s) 926, 1022
Alw26I GTCTC 3 cut(s) 92, 230, 591
AlwI GGATC 2 cut(s) 200, 213
AlwNI CAGNNNCTG 1 cut(s) 983
Ama87I CYCGRG 2 cut(s) 441, 958
AoxI GGCC 6 cut(s) 78, 561, 605, 661, 676, 691
ApoI RAATTY 1 cut(s) 719
Asp700I GAANNNNTTC 1 cut(s) 374
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 6 cut(s) 157, 662, 692, 800, 980, 1001
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 974
AsuNHI GCTAGC 1 cut(s) 47
AvaI CYCGRG 2 cut(s) 441, 958
AvaII GGWCC 4 cut(s) 157, 800, 980, 1001
BalI TGGCCA 1 cut(s) 80
BamHI GGATCC 1 cut(s) 205
BauI CACGAG 1 cut(s) 1005
BccI CCATC 2 cut(s) 515, 959
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 4 cut(s) 224, 666, 810, 984
BciVI GTATCC 1 cut(s) 849
BclI TGATCA 1 cut(s) 147
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 3 cut(s) 92, 230, 591
BfaI CTAG 7 cut(s) 48, 603, 624, 843, 927, 990, 1026
BfmI CTRYAG 1 cut(s) 703
BfoI RGCGCY 1 cut(s) 48
BfuAI ACCTGC 2 cut(s) 250, 1022
BfuI GTATCC 1 cut(s) 849
BisI GCNGC 1 cut(s) 1042
BlsI GCNGC 1 cut(s) 1043
Bme1390I CCNGG 5 cut(s) 54, 224, 666, 810, 984
Bme18I GGWCC 4 cut(s) 157, 800, 980, 1001
BmeT110I CYCGRG 2 cut(s) 441, 958
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 6 cut(s) 157, 662, 692, 800, 980, 1001
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 5 cut(s) 54, 224, 666, 810, 984
BmsI GCATC 3 cut(s) 415, 748, 757
BmtI GCTAGC 1 cut(s) 51
BoxI GACNNNNGTC 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 419
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 52, 664
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 166, 689, 809
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 4 cut(s) 224, 666, 810, 984
BseDI CCNNGG 2 cut(s) 52, 664
BseGI GGATG 1 cut(s) 526
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 4 cut(s) 35, 166, 689, 809
BseRI GAGGAG 1 cut(s) 416
BseYI CCCAGC 1 cut(s) 947
BshFI GGCC 6 cut(s) 80, 563, 607, 663, 678, 693
BsiHKCI CYCGRG 2 cut(s) 441, 958
BsiSI CCGG 2 cut(s) 36, 54
BslI CCNNNNNNNGG 4 cut(s) 35, 166, 689, 809
BsmAI GTCTC 3 cut(s) 92, 230, 591
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 6 cut(s) 80, 563, 607, 663, 678, 693
BsoBI CYCGRG 2 cut(s) 441, 958
Bsp143I GATC 4 cut(s) 147, 205, 411, 537
BspACI CCGC 5 cut(s) 160, 336, 436, 900, 1041
BspANI GGCC 6 cut(s) 80, 563, 607, 663, 678, 693
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 207
BspMI ACCTGC 2 cut(s) 250, 1022
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 2 cut(s) 200, 213
BsrBI CCGCTC 1 cut(s) 438
BssECI CCNNGG 2 cut(s) 52, 664
BssMI GATC 4 cut(s) 147, 205, 411, 537
BssSI CACGAG 1 cut(s) 1005
Bst2BI CACGAG 1 cut(s) 1005
Bst2UI CCWGG 4 cut(s) 224, 666, 810, 984
Bst4CI ACNGT 1 cut(s) 352
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 49, 426, 495
BstDEI CTNAG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 526
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 4 cut(s) 150, 208, 414, 540
BstMAI GTCTC 3 cut(s) 92, 230, 591
BstMBI GATC 4 cut(s) 147, 205, 411, 537
BstMWI GCNNNNNNNGC 3 cut(s) 299, 767, 1028
BstNI CCWGG 4 cut(s) 224, 666, 810, 984
BstNSI RCATGY 2 cut(s) 428, 1015
BstPAI GACNNNNGTC 1 cut(s) 242
BstSCI CCNGG 5 cut(s) 52, 222, 664, 808, 982
BstSFI CTRYAG 1 cut(s) 703
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuI GTATCC 1 cut(s) 849
BsuRI GGCC 6 cut(s) 80, 563, 607, 663, 678, 693
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 526
BveI ACCTGC 2 cut(s) 250, 1022
Cac8I GCNNGC 3 cut(s) 49, 426, 495
CaiI CAGNNNCTG 1 cut(s) 983
CciI TCATGA 1 cut(s) 150
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 6 cut(s) 157, 662, 692, 800, 980, 1001
CsiI ACCWGGT 2 cut(s) 222, 982
CviAII CATG 6 cut(s) 151, 425, 578, 713, 818, 1012
DdeI CTNAG 1 cut(s) 318
DpnI GATC 4 cut(s) 149, 207, 413, 539
DpnII GATC 4 cut(s) 147, 205, 411, 537
EaeI YGGCCR 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 563
Eco47I GGWCC 4 cut(s) 157, 800, 980, 1001
Eco57I CTGAAG 2 cut(s) 378, 574
Eco88I CYCGRG 2 cut(s) 441, 958
EcoO109I RGGNCCY 1 cut(s) 980
EcoRII CCWGG 4 cut(s) 222, 664, 808, 982
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 6 cut(s) 154, 428, 581, 716, 821, 1015
FatI CATG 6 cut(s) 150, 424, 577, 712, 817, 1011
FauI CCCGC 2 cut(s) 329, 893
FauNDI CATATG 1 cut(s) 913
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 1042
FokI GGATG 1 cut(s) 533
Fsp4HI GCNGC 1 cut(s) 1042
FspBI CTAG 7 cut(s) 48, 603, 624, 843, 927, 990, 1026
GlaI GCGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 1042
GsaI CCCAGC 1 cut(s) 951
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 6 cut(s) 80, 563, 607, 663, 678, 693
HapII CCGG 2 cut(s) 36, 54
HhaI GCGC 1 cut(s) 47
Hin1II CATG 6 cut(s) 154, 428, 581, 716, 821, 1015
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 6 cut(s) 140, 238, 340, 599, 824, 974
HpaII CCGG 2 cut(s) 36, 54
HphI GGTGA 1 cut(s) 974
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 8 cut(s) 71, 177, 205, 285, 345, 411, 757, 794
Hpy188III TCNNGA 8 cut(s) 118, 151, 233, 313, 441, 466, 541, 978
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 3 cut(s) 101, 243, 418
HpyCH4V TGCA 1 cut(s) 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 767, 1028
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 3 cut(s) 101, 243, 418
Hsp92II CATG 6 cut(s) 154, 428, 581, 716, 821, 1015
HspAI GCGC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 4 cut(s) 147, 205, 411, 537
LmnI GCTCC 2 cut(s) 403, 1019
LweI GCATC 3 cut(s) 415, 748, 757
MabI ACCWGGT 2 cut(s) 222, 982
MaeI CTAG 7 cut(s) 48, 603, 624, 843, 927, 990, 1026
MaeII ACGT 3 cut(s) 101, 243, 418
MaeIII GTNAC 4 cut(s) 352, 708, 968, 1052
MalI GATC 4 cut(s) 149, 207, 413, 539
MbiI CCGCTC 1 cut(s) 438
MboI GATC 4 cut(s) 147, 205, 411, 537
MboII GAAGA 3 cut(s) 371, 568, 819
MflI RGATCY 1 cut(s) 205
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 3 cut(s) 487, 510, 719
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 3 cut(s) 134, 232, 593
Mox20I TGGCCA 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 374
MscI TGGCCA 1 cut(s) 80
MseI TTAA 1 cut(s) 108
Msp20I TGGCCA 1 cut(s) 80
MspI CCGG 2 cut(s) 36, 54
MspR9I CCNGG 5 cut(s) 54, 224, 666, 810, 984
MvaI CCWGG 4 cut(s) 224, 666, 810, 984
MwoI GCNNNNNNNGC 3 cut(s) 299, 767, 1028
NciI CCSGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 913
NdeII GATC 4 cut(s) 147, 205, 411, 537
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 6 cut(s) 154, 428, 581, 716, 821, 1015
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 708
NspI RCATGY 2 cut(s) 428, 1015
PaeI GCATGC 1 cut(s) 428
PaeR7I CTCGAG 1 cut(s) 441
PagI TCATGA 1 cut(s) 150
PceI AGGCCT 1 cut(s) 563
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 3 cut(s) 340, 824, 974
PkrI GCNGC 1 cut(s) 1043
PleI GAGTC 3 cut(s) 134, 232, 593
PpsI GAGTC 3 cut(s) 134, 232, 593
Ppu21I YACGTR 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 980
PshAI GACNNNNGTC 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 980
Psp6I CCWGG 4 cut(s) 222, 664, 808, 982
PspFI CCCAGC 1 cut(s) 947
PspGI CCWGG 4 cut(s) 222, 664, 808, 982
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 6 cut(s) 157, 662, 692, 800, 980, 1001
PspPPI RGGWCCY 1 cut(s) 980
PstNI CAGNNNCTG 1 cut(s) 983
PsuI RGATCY 1 cut(s) 205
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 1042
Sau3AI GATC 4 cut(s) 147, 205, 411, 537
Sau96I GGNCC 6 cut(s) 157, 662, 692, 800, 980, 1001
SchI GAGTC 3 cut(s) 134, 232, 593
ScrFI CCNGG 5 cut(s) 54, 224, 666, 810, 984
SexAI ACCWGGT 2 cut(s) 222, 982
SfaNI GCATC 3 cut(s) 415, 748, 757
SfcI CTRYAG 1 cut(s) 703
Sfr274I CTCGAG 1 cut(s) 441
SinI GGWCC 4 cut(s) 157, 800, 980, 1001
SlaI CTCGAG 1 cut(s) 441
SmlI CTYRAG 2 cut(s) 95, 441
SmoI CTYRAG 2 cut(s) 95, 441
SphI GCATGC 1 cut(s) 428
Sse9I AATT 3 cut(s) 487, 510, 719
SseBI AGGCCT 1 cut(s) 563
SsiI CCGC 5 cut(s) 160, 336, 436, 900, 1041
SspMI CTAG 7 cut(s) 48, 603, 624, 843, 927, 990, 1026
StuI AGGCCT 1 cut(s) 563
StyD4I CCNGG 5 cut(s) 52, 222, 664, 808, 982
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 3 cut(s) 104, 246, 421
TaqI TCGA 4 cut(s) 117, 138, 442, 465
TasI AATT 3 cut(s) 487, 510, 719
TauI GCSGC 1 cut(s) 1044
TfiI GAWTC 3 cut(s) 340, 824, 974
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 1 cut(s) 708
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 6 cut(s) 55, 94, 167, 181, 819, 1011
VpaK11BI GGWCC 4 cut(s) 157, 800, 980, 1001
XapI RAATTY 1 cut(s) 719
XceI RCATGY 2 cut(s) 428, 1015
XhoI CTCGAG 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 7 cut(s) 48, 603, 624, 843, 927, 990, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.