Prupe.3G195500_v2.0.a1

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0017345
Physical Location & Seq
Forward (+)
20674764 .. 20678535
3772 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G195500.1

Sequence Viewer

Length: 1068 bp
ATGGCTTCGAAGAAGAGTAACCATAACCCTCACTCAGGCGACGGTGCTAGCCCTGGAAAGATATTCATCGGTGGCTTAGCTAAAGACACCACCTTGGATACCTTCGTTAAGTACTTTGAGAAGTATGGGGAGATAATAGACTCTGTGATCATGAAAGACCGGCAAACTGGTCGACCTAGGGGATTTGGGTTCATCACCTATGCGGATCCTTCAGTTGTTGACCAAGTTATGGAAGAGACTCATGTAATCAATGACAAGCAGGTTGAGATAAAGAGAACCATTCCAAAGGGTTCTGGACAGGGAAATGATTTCAAAACAAAGAAAATTTTTGTTGGCGGGATTCCAACCACAGTTACTGAAGATGAGTTCAAAAGTTTCTTTTCACAATTTGGAAAGGTGGTGGAGCATGAGATCATACGTGATCATGTCACTAAGCGCTCTCGAGGTTTTGGATTTGTTGTATTTGACAACGAAAAAGTTGTTGATAATGTTCTTGCAAATGGAAATAGGATTGATATGGCTGGTACACAGGTTGAGATCAAGAAGGCCTCACCAAAGAAGGCCTCAAACCCAGCACATGTTCCTGCATTTGGTAGTGACTCTAGGGCACACCCTTACAATGATAGTTTCGGTGGATTTGGAGACTCCATGAGTGGTTTCGGTCCTGGTGGTTATGGTGCTGGAGGTTATGGCCCTGCTTCTTATAGGTCACTGGGAGGTTTTGGCAGTAGGTTTGGTGATTATGGTGGATATCCAGATGGTAATGATTTTGGAGGTGGTTTTGGGGGCTTTGGTGGTGGTGGTGCTTTTTCTGGTTATCGTGGAGAGTCGTCATTCGGTTATTCTAGTCGCTTTGGTTCTTATGGTGGAGGGATTGGTGGGGGATATGGTGGTAGTGGGTTAGGTGCATATGGCCGTGAAGCTAGGGGCTATGGTGGTTATGATGGTTCAGGCTCTGCTGATGGTTATGATTCAGGACCTGGTGCTAGTTATGGTGGAACTCGAAGCTTGTACGGTAGTAGGGCAGGTTATGGCGGCAGTAGTCGTTACCACCCTTACGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

356

Amino Acids

37.23

Weight (kDa)

8.88

Isoelectric Point (pI)

27.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g40460
malus_domestica MD17G1118700.v1.1 MD17G1277100.v1.1
prunus_persica Prupe.3G195500_v2.0.a1
pyrus_communis pycom17g10900
rosa_chinensis RchiOBHm_Chr2g0155691
rosa_multiflora Rmu_co8436359.1_g000001
rosa_roxburghii Rroxscaffold_2G00093550
rosa_rugosa Rorug02G0449400
rosa_samantha Rh2AG515300 Rh2CG500200 Rh2DG535200
rosa_wichuraiana Rw2G042350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 250, 1016
AccB7I CCANNNNNTGG 1 cut(s) 229
AccI GTMKAC 1 cut(s) 172
AciI CCGC 3 cut(s) 203, 336, 1035
AclWI GGATC 2 cut(s) 200, 213
AcoI YGGCCR 1 cut(s) 913
AcsI RAATTY 1 cut(s) 324
AcuI CTGAAG 2 cut(s) 195, 378
AfaI GTAC 3 cut(s) 113, 526, 1013
AfeI AGCGCT 1 cut(s) 437
AfiI CCNNNNNNNGG 3 cut(s) 35, 229, 590
AflIII ACRYGT 1 cut(s) 577
AgsI TTSAA 2 cut(s) 313, 370
AjnI CCWGG 3 cut(s) 52, 664, 979
AluBI AGCT 3 cut(s) 80, 923, 1008
AluI AGCT 3 cut(s) 80, 923, 1008
Alw26I GTCTC 2 cut(s) 230, 636
AlwI GGATC 2 cut(s) 200, 213
AlwNI CAGNNNCTG 3 cut(s) 356, 956, 980
Ama87I CYCGRG 1 cut(s) 441
Aor51HI AGCGCT 1 cut(s) 437
AoxI GGCC 4 cut(s) 546, 561, 691, 913
ApoI RAATTY 1 cut(s) 324
AspA2I CCTAGG 1 cut(s) 176
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 3 cut(s) 662, 692, 977
AsuHPI GGTGA 3 cut(s) 187, 543, 749
AsuII TTCGAA 1 cut(s) 8
AsuNHI GCTAGC 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 441
AvaII GGWCC 2 cut(s) 662, 977
AvrII CCTAGG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 610
BaeI ACNNNNGTAYC 4 cut(s) 90, 123, 516, 549
BamHI GGATCC 1 cut(s) 205
BccI CCATC 3 cut(s) 752, 938, 956
BceAI ACGGC 1 cut(s) 900
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 3 cut(s) 54, 666, 981
BciVI GTATCC 1 cut(s) 91
BclI TGATCA 2 cut(s) 147, 421
BcoDI GTCTC 2 cut(s) 230, 636
BfaI CTAG 6 cut(s) 48, 177, 603, 846, 924, 987
BfoI RGCGCY 1 cut(s) 439
BfuAI ACCTGC 2 cut(s) 250, 1016
BfuI GTATCC 1 cut(s) 91
BisI GCNGC 1 cut(s) 1036
BlnI CCTAGG 1 cut(s) 176
BlpI GCTNAGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 1037
BmcAI AGTACT 1 cut(s) 113
Bme1390I CCNGG 3 cut(s) 54, 666, 981
Bme18I GGWCC 2 cut(s) 662, 977
BmeT110I CYCGRG 1 cut(s) 441
BmgT120I GGNCC 3 cut(s) 662, 692, 977
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 3 cut(s) 54, 666, 981
BmrI ACTGGG 1 cut(s) 722
BmtI GCTAGC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 722
BpmI CTGGAG 1 cut(s) 702
Bpu1102I GCTNAGC 1 cut(s) 76
Bpu14I TTCGAA 1 cut(s) 8
BsaAI YACGTR 1 cut(s) 419
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 52, 93, 176
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 229, 590
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 172, 717
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 3 cut(s) 54, 666, 981
BseDI CCNNGG 3 cut(s) 52, 93, 176
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 3 cut(s) 35, 229, 590
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 172, 717
BseSI GKGCMC 1 cut(s) 610
BseYI CCCAGC 1 cut(s) 571
BshFI GGCC 4 cut(s) 548, 563, 693, 915
BsiHKCI CYCGRG 1 cut(s) 441
BsiSI CCGG 1 cut(s) 160
BslI CCNNNNNNNGG 3 cut(s) 35, 229, 590
BsmAI GTCTC 2 cut(s) 230, 636
BsnI GGCC 4 cut(s) 548, 563, 693, 915
BsoBI CYCGRG 1 cut(s) 441
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 5 cut(s) 147, 205, 411, 421, 537
Bsp1720I GCTNAGC 1 cut(s) 76
BspACI CCGC 3 cut(s) 203, 336, 1035
BspANI GGCC 4 cut(s) 548, 563, 693, 915
BspCNI CTCAG 1 cut(s) 47
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 207
BspMI ACCTGC 2 cut(s) 250, 1016
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 2 cut(s) 200, 213
BspT104I TTCGAA 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 2 cut(s) 172, 717
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 3 cut(s) 52, 93, 176
BssMI GATC 5 cut(s) 147, 205, 411, 421, 537
BssT1I CCWWGG 2 cut(s) 93, 176
Bst2UI CCWGG 3 cut(s) 54, 666, 981
Bst4CI ACNGT 3 cut(s) 44, 352, 1016
Bst6I CTCTTC 2 cut(s) 8, 228
BstBAI YACGTR 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 34, 76, 432
BstENI CCTNNNNNAGG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 5 cut(s) 150, 208, 414, 424, 540
BstMAI GTCTC 2 cut(s) 230, 636
BstMBI GATC 5 cut(s) 147, 205, 411, 421, 537
BstNI CCWGG 3 cut(s) 54, 666, 981
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 3 cut(s) 52, 664, 979
BstSLI GKGCMC 1 cut(s) 610
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 4 cut(s) 548, 563, 693, 915
BtsIMutI CAGTG 1 cut(s) 710
BveI ACCTGC 2 cut(s) 250, 1016
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 3 cut(s) 356, 956, 980
CciI TCATGA 1 cut(s) 150
CfoI GCGC 1 cut(s) 438
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 3 cut(s) 662, 692, 977
CsiI ACCWGGT 1 cut(s) 979
Csp6I GTAC 3 cut(s) 112, 525, 1012
CviAII CATG 6 cut(s) 151, 242, 407, 425, 578, 649
CviQI GTAC 3 cut(s) 112, 525, 1012
DdeI CTNAG 3 cut(s) 34, 76, 432
DpnI GATC 5 cut(s) 149, 207, 413, 423, 539
DpnII GATC 5 cut(s) 147, 205, 411, 421, 537
EaeI YGGCCR 1 cut(s) 913
Eam1104I CTCTTC 2 cut(s) 8, 228
EarI CTCTTC 2 cut(s) 8, 228
Eco130I CCWWGG 2 cut(s) 93, 176
Eco147I AGGCCT 2 cut(s) 548, 563
Eco32I GATATC 1 cut(s) 752
Eco47I GGWCC 2 cut(s) 662, 977
Eco47III AGCGCT 1 cut(s) 437
Eco57I CTGAAG 2 cut(s) 195, 378
Eco88I CYCGRG 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 977
EcoRII CCWGG 3 cut(s) 52, 664, 979
EcoRV GATATC 1 cut(s) 752
EcoT14I CCWWGG 2 cut(s) 93, 176
ErhI CCWWGG 2 cut(s) 93, 176
FaeI CATG 6 cut(s) 154, 245, 410, 428, 581, 652
FatI CATG 6 cut(s) 150, 241, 406, 424, 577, 648
FauI CCCGC 1 cut(s) 329
FauNDI CATATG 1 cut(s) 910
FbaI TGATCA 2 cut(s) 147, 421
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 1036
Fsp4HI GCNGC 1 cut(s) 1036
FspBI CTAG 6 cut(s) 48, 177, 603, 846, 924, 987
GlaI GCGC 1 cut(s) 437
GluI GCNGC 1 cut(s) 1036
GsaI CCCAGC 1 cut(s) 575
GsuI CTGGAG 1 cut(s) 702
HaeII RGCGCY 1 cut(s) 439
HaeIII GGCC 4 cut(s) 548, 563, 693, 915
HapII CCGG 1 cut(s) 160
HhaI GCGC 1 cut(s) 438
Hin1II CATG 6 cut(s) 154, 245, 410, 428, 581, 652
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 2 cut(s) 173, 220
HindII GTYRAC 2 cut(s) 173, 220
HindIII AAGCTT 1 cut(s) 1006
HinfI GANTC 7 cut(s) 140, 238, 340, 599, 644, 827, 971
HpaII CCGG 1 cut(s) 160
HphI GGTGA 3 cut(s) 187, 543, 749
Hpy166II GTNNAC 3 cut(s) 173, 220, 527
Hpy188III TCNNGA 6 cut(s) 151, 294, 441, 541, 755, 975
Hpy8I GTNNAC 3 cut(s) 173, 220, 527
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 5 cut(s) 112, 219, 538, 553, 1056
HpyCH4III ACNGT 3 cut(s) 44, 352, 1016
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 3 cut(s) 497, 587, 908
HpyF3I CTNAG 3 cut(s) 34, 76, 432
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 6 cut(s) 154, 245, 410, 428, 581, 652
HspAI GCGC 1 cut(s) 436
Ksp22I TGATCA 2 cut(s) 147, 421
Kzo9I GATC 5 cut(s) 147, 205, 411, 421, 537
LmnI GCTCC 1 cut(s) 403
MabI ACCWGGT 1 cut(s) 979
MaeI CTAG 6 cut(s) 48, 177, 603, 846, 924, 987
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 6 cut(s) 17, 352, 427, 596, 708, 1046
MalI GATC 5 cut(s) 149, 207, 413, 423, 539
MboI GATC 5 cut(s) 147, 205, 411, 421, 537
MboII GAAGA 4 cut(s) 22, 25, 245, 371
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 2 cut(s) 324, 386
MlyI GAGTC 5 cut(s) 134, 232, 593, 638, 836
MmeI TCCRAC 1 cut(s) 368
MnlI CCTC 8 cut(s) 39, 437, 559, 574, 677, 710, 767, 863
MseI TTAA 1 cut(s) 108
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 3 cut(s) 54, 666, 981
MvaI CCWGG 3 cut(s) 54, 666, 981
NdeI CATATG 1 cut(s) 910
NdeII GATC 5 cut(s) 147, 205, 411, 421, 537
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 6 cut(s) 154, 245, 410, 428, 581, 652
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 3 cut(s) 427, 596, 708
NspI RCATGY 1 cut(s) 581
NspV TTCGAA 1 cut(s) 8
PaeR7I CTCGAG 1 cut(s) 441
PagI TCATGA 1 cut(s) 150
PceI AGGCCT 2 cut(s) 548, 563
PciI ACATGT 1 cut(s) 577
PfeI GAWTC 2 cut(s) 340, 971
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 1 cut(s) 1037
PleI GAGTC 5 cut(s) 134, 232, 593, 638, 835
PpsI GAGTC 5 cut(s) 134, 232, 593, 638, 835
Ppu21I YACGTR 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 977
PscI ACATGT 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 977
Psp6I CCWGG 3 cut(s) 52, 664, 979
PspFI CCCAGC 1 cut(s) 571
PspGI CCWGG 3 cut(s) 52, 664, 979
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 3 cut(s) 662, 692, 977
PspPPI RGGWCCY 1 cut(s) 977
PstNI CAGNNNCTG 3 cut(s) 356, 956, 980
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 3 cut(s) 113, 526, 1013
RsaNI GTAC 3 cut(s) 112, 525, 1012
SalI GTCGAC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 1036
Sau3AI GATC 5 cut(s) 147, 205, 411, 421, 537
Sau96I GGNCC 3 cut(s) 662, 692, 977
ScaI AGTACT 1 cut(s) 113
SchI GAGTC 5 cut(s) 134, 232, 593, 638, 836
ScrFI CCNGG 3 cut(s) 54, 666, 981
SduI GDGCHC 1 cut(s) 610
SexAI ACCWGGT 1 cut(s) 979
Sfr274I CTCGAG 1 cut(s) 441
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 2 cut(s) 662, 977
SlaI CTCGAG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 2 cut(s) 324, 386
SseBI AGGCCT 2 cut(s) 548, 563
SsiI CCGC 3 cut(s) 203, 336, 1035
SspMI CTAG 6 cut(s) 48, 177, 603, 846, 924, 987
StuI AGGCCT 2 cut(s) 548, 563
StyD4I CCNGG 3 cut(s) 52, 664, 979
StyI CCWWGG 2 cut(s) 93, 176
TaaI ACNGT 3 cut(s) 44, 352, 1016
TaiI ACGT 1 cut(s) 421
TaqI TCGA 4 cut(s) 8, 172, 442, 1003
TaqII GACCGA 1 cut(s) 650
TasI AATT 2 cut(s) 324, 386
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 1038
TfiI GAWTC 2 cut(s) 340, 971
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 717
TseFI GTSAC 3 cut(s) 427, 596, 708
Tsp45I GTSAC 3 cut(s) 427, 596, 708
TspDTI ATGAA 3 cut(s) 55, 167, 181
TspRI CASTG 1 cut(s) 717
Van91I CCANNNNNTGG 1 cut(s) 229
VpaK11BI GGWCC 2 cut(s) 662, 977
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 581
XhoI CTCGAG 1 cut(s) 441
XmaJI CCTAGG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 172
XspI CTAG 6 cut(s) 48, 177, 603, 846, 924, 987
ZrmI AGTACT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.