MD17G1118700.v1.1

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0017345
Physical Location & Seq
Reverse (-)
10278403 .. 10281057
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1118700.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGGCTTCCAAGAAGAGTAACTATAACCCTCTCTCCGGCGATGGTGCTAGCCCCGGAAAGATCTTCATCGGTGGTTTAGCCAAAGACACCACTTTGAATACCTTCGTTCAGTACTTTGAGAAGTATGGGGAGATAATTGACTCTGTGATCATGAAAGACCGCGAAACTGGTCGACCTAGGGGGTTCGGGTTCATCACCTATGAGGATCCTGCTGTTGTTGACCAATTAATTGAAGAGACTCATGTGATCAACGGAAAGCAGGTTGAGATAAAGAGAACCATTCCAAAAGGTGCTGGTCAGGGAAATGATTTCAAAACAAAGAAAATTTTTGTTGGCGGGATTCCACCGACCTTTACTGAAGATGAGTTCAAAAGCTTCTTTTCACAATTTGGTAAGGTGGTGGAGCATGAGATCATACGTGATCATGTCACTAAGCGCCCTCGAGGATTTGGATTTGTTGTATTTGACAGCAATCATGATGTTGATAATGCTCTCGCAAATGGAAATAGGATTGATATGGCAGGTACACAGGTTGAGATCAAGAAGGCTGAACCAAAGAAGGCCTCAAACCCAGCACGTGTTCCTGCATTTGGTACTGACTCTAGGGCACACCCTTACAATGATAGATTCAGTGCATTTGGCGACCCCATGAGTAGTTTTGGTCCTGGTGGTTATGGCCCTCCTCCTTATAGGTCACTTGGACGTTTTGGCAGTAGGTTTGGTGATTATGGTGGATATCCAGATAGTACTGATTTTGGAGGTGGTTTTAGAGGTGCCTTTTCTGGTTATCGTGGGGGGTCATCATTCGGCTATCCTAGTCGCTTTGGTTCCTATGGTGAAGGGCTTGGTGGGGGATATGATGGTAGTGGGTTAGGTGCATATGGGCATGAAGTTAGGGGCTATGGTGGTTACGATGGTTCAGGCTCTGGTGATGGCTATGATTCAGGTCCTGCTGCTACTTATGGTGGGCCTCGAGGCATGTATGGTAGTAGGGCAGGTTATGGTGGGAGTAGTCGTTACCATCCCTACGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

346

Amino Acids

36.98

Weight (kDa)

8.71

Isoelectric Point (pI)

26.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 21 - 79 3.4e-14 RNA recognition motif
RRM_7 PF16367 107 - 168 4e-07 RNA recognition motif
RRM_1 PF00076 109 - 177 1.7e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g40460
malus_domestica MD17G1118700.v1.1 MD17G1277100.v1.1
prunus_persica Prupe.3G195500_v2.0.a1
pyrus_communis pycom17g10900
rosa_chinensis RchiOBHm_Chr2g0155691
rosa_multiflora Rmu_co8436359.1_g000001
rosa_roxburghii Rroxscaffold_2G00093550
rosa_rugosa Rorug02G0449400
rosa_samantha Rh2AG515300 Rh2CG500200 Rh2DG535200
rosa_wichuraiana Rw2G042350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 2 cut(s) 441, 972
Acc36I ACCTGC 3 cut(s) 250, 512, 986
AccB1I GGYRCC 1 cut(s) 773
AccI GTMKAC 1 cut(s) 172
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 160, 336
AclWI GGATC 2 cut(s) 200, 213
AcsI RAATTY 1 cut(s) 324
AcuI CTGAAG 1 cut(s) 378
AcvI CACGTG 1 cut(s) 578
AfaI GTAC 4 cut(s) 113, 526, 595, 748
AfiI CCNNNNNNNGG 3 cut(s) 35, 590, 1032
AflIII ACRYGT 1 cut(s) 577
AgsI TTSAA 4 cut(s) 97, 233, 313, 370
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 1 cut(s) 375
AluI AGCT 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 2 cut(s) 200, 213
AlwNI CAGNNNCTG 2 cut(s) 926, 950
Ama87I CYCGRG 2 cut(s) 441, 972
AoxI GGCC 3 cut(s) 561, 676, 968
ApeKI GCWGC 1 cut(s) 953
ApoI RAATTY 1 cut(s) 324
AseI ATTAAT 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 101
AspA2I CCTAGG 1 cut(s) 176
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 4 cut(s) 662, 677, 947, 968
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 4 cut(s) 187, 734, 848, 941
AsuNHI GCTAGC 1 cut(s) 47
AvaI CYCGRG 2 cut(s) 441, 972
AvaII GGWCC 2 cut(s) 662, 947
AvrII CCTAGG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 610
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 773
BbrPI CACGTG 1 cut(s) 578
BbvI GCAGC 1 cut(s) 940
BccI CCATC 5 cut(s) 35, 854, 908, 926, 1029
BciT130I CCWGG 1 cut(s) 666
BclI TGATCA 3 cut(s) 147, 246, 421
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 4 cut(s) 48, 177, 603, 816
BfoI RGCGCY 1 cut(s) 439
BfuAI ACCTGC 3 cut(s) 250, 512, 986
BglII AGATCT 1 cut(s) 60
BisI GCNGC 1 cut(s) 954
BlnI CCTAGG 1 cut(s) 176
BlsI GCNGC 1 cut(s) 955
BmcAI AGTACT 2 cut(s) 113, 748
Bme1390I CCNGG 2 cut(s) 54, 666
Bme18I GGWCC 2 cut(s) 662, 947
BmeT110I CYCGRG 2 cut(s) 441, 972
BmgT120I GGNCC 4 cut(s) 662, 677, 947, 968
BmiI GGNNCC 3 cut(s) 207, 775, 829
BmrFI CCNGG 2 cut(s) 54, 666
BmtI GCTAGC 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 54
BsaAI YACGTR 2 cut(s) 419, 578
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 52, 176
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 1000, 1030
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 590, 1032
Bse1I ACTGG 1 cut(s) 172
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 2 cut(s) 52, 176
BseGI GGATG 1 cut(s) 1021
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 3 cut(s) 35, 590, 1032
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 672
BseSI GKGCMC 1 cut(s) 610
BseXI GCAGC 1 cut(s) 940
BseYI CCCAGC 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 3 cut(s) 563, 678, 970
BshNI GGYRCC 1 cut(s) 773
BsiHKCI CYCGRG 2 cut(s) 441, 972
BsiSI CCGG 2 cut(s) 36, 54
BslI CCNNNNNNNGG 3 cut(s) 35, 590, 1032
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 3 cut(s) 563, 678, 970
BsoBI CYCGRG 2 cut(s) 441, 972
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 7 cut(s) 60, 147, 205, 246, 411, 421, 537
BspACI CCGC 2 cut(s) 160, 336
BspANI GGCC 3 cut(s) 563, 678, 970
BspFNI CGCG 1 cut(s) 162
BspHI TCATGA 2 cut(s) 150, 475
BspLI GGNNCC 3 cut(s) 207, 775, 829
BspMI ACCTGC 3 cut(s) 250, 512, 986
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 2 cut(s) 200, 213
BspT107I GGYRCC 1 cut(s) 773
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 52, 176
BssMI GATC 7 cut(s) 60, 147, 205, 246, 411, 421, 537
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 666
Bst6I CTCTTC 2 cut(s) 8, 228
BstBAI YACGTR 2 cut(s) 419, 578
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 432
BstENI CCTNNNNNAGG 1 cut(s) 1030
BstF5I GGATG 1 cut(s) 1021
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 7 cut(s) 63, 150, 208, 249, 414, 424, 540
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 7 cut(s) 60, 147, 205, 246, 411, 421, 537
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 982
BstSCI CCNGG 2 cut(s) 52, 664
BstSLI GKGCMC 1 cut(s) 610
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 940
BstX2I RGATCY 2 cut(s) 60, 205
BstYI RGATCY 2 cut(s) 60, 205
BsuRI GGCC 3 cut(s) 563, 678, 970
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 1021
BtsIMutI CAGTG 1 cut(s) 637
BveI ACCTGC 3 cut(s) 250, 512, 986
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 2 cut(s) 926, 950
CciI TCATGA 2 cut(s) 150, 475
CfoI GCGC 1 cut(s) 438
Cfr13I GGNCC 4 cut(s) 662, 677, 947, 968
Csp6I GTAC 4 cut(s) 112, 525, 594, 747
CviAII CATG 8 cut(s) 151, 242, 407, 425, 476, 649, 887, 979
CviQI GTAC 4 cut(s) 112, 525, 594, 747
DdeI CTNAG 1 cut(s) 432
DpnI GATC 7 cut(s) 62, 149, 207, 248, 413, 423, 539
DpnII GATC 7 cut(s) 60, 147, 205, 246, 411, 421, 537
Eam1104I CTCTTC 2 cut(s) 8, 228
EarI CTCTTC 2 cut(s) 8, 228
Eco130I CCWWGG 1 cut(s) 176
Eco147I AGGCCT 1 cut(s) 563
Eco32I GATATC 1 cut(s) 737
Eco47I GGWCC 2 cut(s) 662, 947
Eco57I CTGAAG 1 cut(s) 378
Eco72I CACGTG 1 cut(s) 578
Eco88I CYCGRG 2 cut(s) 441, 972
EcoNI CCTNNNNNAGG 1 cut(s) 1030
EcoO109I RGGNCCY 1 cut(s) 947
EcoRII CCWGG 1 cut(s) 664
EcoRV GATATC 1 cut(s) 737
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 8 cut(s) 154, 245, 410, 428, 479, 652, 890, 982
FatI CATG 8 cut(s) 150, 241, 406, 424, 475, 648, 886, 978
FauI CCCGC 1 cut(s) 329
FauNDI CATATG 1 cut(s) 880
FbaI TGATCA 3 cut(s) 147, 246, 421
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 954
FokI GGATG 1 cut(s) 1008
Fsp4HI GCNGC 1 cut(s) 954
FspBI CTAG 4 cut(s) 48, 177, 603, 816
GlaI GCGC 1 cut(s) 437
GluI GCNGC 1 cut(s) 954
GsaI CCCAGC 1 cut(s) 575
HaeII RGCGCY 1 cut(s) 439
HaeIII GGCC 3 cut(s) 563, 678, 970
HapII CCGG 2 cut(s) 36, 54
HhaI GCGC 1 cut(s) 438
Hin1II CATG 8 cut(s) 154, 245, 410, 428, 479, 652, 890, 982
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 2 cut(s) 173, 220
HindII GTYRAC 2 cut(s) 173, 220
HindIII AAGCTT 1 cut(s) 373
HinfI GANTC 6 cut(s) 140, 238, 340, 599, 627, 941
HpaII CCGG 2 cut(s) 36, 54
HphI GGTGA 4 cut(s) 187, 734, 848, 941
Hpy166II GTNNAC 3 cut(s) 173, 220, 527
Hpy188III TCNNGA 4 cut(s) 151, 476, 541, 740
Hpy8I GTNNAC 3 cut(s) 173, 220, 527
HpyAV CCTTC 5 cut(s) 112, 538, 553, 833, 1026
HpyCH4IV ACGT 3 cut(s) 418, 577, 703
HpyCH4V TGCA 3 cut(s) 587, 635, 878
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 3 cut(s) 418, 577, 703
Hsp92II CATG 8 cut(s) 154, 245, 410, 428, 479, 652, 890, 982
HspAI GCGC 1 cut(s) 436
Ksp22I TGATCA 3 cut(s) 147, 246, 421
Kzo9I GATC 7 cut(s) 60, 147, 205, 246, 411, 421, 537
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 1 cut(s) 940
MaeI CTAG 4 cut(s) 48, 177, 603, 816
MaeII ACGT 3 cut(s) 418, 577, 703
MaeIII GTNAC 5 cut(s) 17, 427, 693, 908, 1016
MalI GATC 7 cut(s) 62, 149, 207, 248, 413, 423, 539
MboI GATC 7 cut(s) 60, 147, 205, 246, 411, 421, 537
MboII GAAGA 4 cut(s) 25, 55, 245, 371
MflI RGATCY 2 cut(s) 60, 205
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 5 cut(s) 135, 224, 228, 324, 386
MlyI GAGTC 3 cut(s) 134, 232, 593
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 1 cut(s) 227
MspI CCGG 2 cut(s) 36, 54
MspR9I CCNGG 2 cut(s) 54, 666
MvaI CCWGG 1 cut(s) 666
MvnI CGCG 1 cut(s) 162
NciI CCSGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 880
NdeII GATC 7 cut(s) 60, 147, 205, 246, 411, 421, 537
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 8 cut(s) 154, 245, 410, 428, 479, 652, 890, 982
NlaIV GGNNCC 3 cut(s) 207, 775, 829
NmuCI GTSAC 2 cut(s) 427, 693
NspI RCATGY 1 cut(s) 982
PaeR7I CTCGAG 2 cut(s) 441, 972
PagI TCATGA 2 cut(s) 150, 475
PceI AGGCCT 1 cut(s) 563
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 3 cut(s) 340, 627, 941
PkrI GCNGC 1 cut(s) 955
PleI GAGTC 3 cut(s) 134, 232, 593
PmaCI CACGTG 1 cut(s) 578
PmlI CACGTG 1 cut(s) 578
PpsI GAGTC 3 cut(s) 134, 232, 593
Ppu21I YACGTR 2 cut(s) 419, 578
PpuMI RGGWCCY 1 cut(s) 947
PshBI ATTAAT 1 cut(s) 227
Psp5II RGGWCCY 1 cut(s) 947
Psp6I CCWGG 1 cut(s) 664
PspCI CACGTG 1 cut(s) 578
PspFI CCCAGC 1 cut(s) 571
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 3 cut(s) 207, 775, 829
PspPI GGNCC 4 cut(s) 662, 677, 947, 968
PspPPI RGGWCCY 1 cut(s) 947
PspXI VCTCGAGB 2 cut(s) 441, 972
PstNI CAGNNNCTG 2 cut(s) 926, 950
PsuI RGATCY 2 cut(s) 60, 205
RsaI GTAC 4 cut(s) 113, 526, 595, 748
RsaNI GTAC 4 cut(s) 112, 525, 594, 747
SalI GTCGAC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 1 cut(s) 954
Sau3AI GATC 7 cut(s) 60, 147, 205, 246, 411, 421, 537
Sau96I GGNCC 4 cut(s) 662, 677, 947, 968
ScaI AGTACT 2 cut(s) 113, 748
SchI GAGTC 3 cut(s) 134, 232, 593
ScrFI CCNGG 2 cut(s) 54, 666
SduI GDGCHC 1 cut(s) 610
Sfr274I CTCGAG 2 cut(s) 441, 972
SinI GGWCC 2 cut(s) 662, 947
SlaI CTCGAG 2 cut(s) 441, 972
SmlI CTYRAG 2 cut(s) 441, 972
SmoI CTYRAG 2 cut(s) 441, 972
Sse9I AATT 5 cut(s) 135, 224, 228, 324, 386
SseBI AGGCCT 1 cut(s) 563
SsiI CCGC 2 cut(s) 160, 336
SspMI CTAG 4 cut(s) 48, 177, 603, 816
StuI AGGCCT 1 cut(s) 563
StyD4I CCNGG 2 cut(s) 52, 664
StyI CCWWGG 1 cut(s) 176
TaiI ACGT 3 cut(s) 421, 580, 706
TaqI TCGA 3 cut(s) 172, 442, 973
TasI AATT 5 cut(s) 135, 224, 228, 324, 386
TatI WGTACW 2 cut(s) 111, 746
TfiI GAWTC 3 cut(s) 340, 627, 941
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 2 cut(s) 427, 693
TseI GCWGC 1 cut(s) 953
Tsp45I GTSAC 2 cut(s) 427, 693
TspDTI ATGAA 4 cut(s) 55, 167, 181, 903
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 637
VpaK11BI GGWCC 2 cut(s) 662, 947
VspI ATTAAT 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 1030
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 982
XhoI CTCGAG 2 cut(s) 441, 972
XmaJI CCTAGG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 101
XspI CTAG 4 cut(s) 48, 177, 603, 816
ZrmI AGTACT 2 cut(s) 113, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.