Rroxscaffold_2G00093550

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017345
Physical Location & Seq
Reverse (-)
14904995 .. 14907199
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093550.1

Sequence Viewer

Length: 1068 bp
ATGGCTTCCAGGAAGGGCGACTACAACCCTCACTCCGGCGACGGCGCTAGCCCTGGAAAGATATTCATCGGAGGCTTGGCAAAGAACACCACCTTAGAGACCTTCATTAAGTACTTTGAGAAGTATGGGGAGATAATTGACTCTGTCATCATGAAGGACCGCCAAACGGGGCTTCCTAGGGGTTTCGGCTTTATAACCTATGCCGATCCTTCTGTTGTTGACCAGGTTATTCAAGAGACTCACGTCATCAATGACAAGCAGGTTGAGATAAAGAGAACCATTCCAAAAGGTGCCGGACAAGCTAATGATTTCAAAACTAAGAAAGTTTTTGTAGGCGGGATTCCAAGAACTGTTACAGAAGATGAATTGAAAGATTTCTTTTCAAAGTATGGTAATGTAGAGGAGCATCAGATCATACGCGAGCATGCCACTAACCGCTCTCGAGGGTTTGGATTTGTTGTATTTGAGAGCGAAAAAGTTGTTGATAATTTACTGGCAAATGGAAATAAAATTGATATGGATGGAACACAGGTTGAGATCAAGAAGGCTGAACCGAAGAAGGTCTCAAACCCCGCTCATGTTCCTGCCTTCAGTAGAGACTCTAGGGCACCCCCATACCATGCTAGTTATGATTTAGTCGGCAACACATATAGTGGTTATGGCCCTGGTGGTTATGGCCTTCCTTCTTATGGCCCTCCTTCCTATAGGTCACATGGAGATTTTGGCAATAGGTTTGATGATTACAATGGTTATTCAGATGCTAATGATGTTGGTGTTGGTTTTGAGGGTCTCAGAGGTGGCCCTTTTCCTGGTTATCACGGAGATTCTTCATTCGGGTATCCTAGTAGATTTTCATCCTATCGTGGAGGGCTTGGTGGGGGATATGGTGGTAGCGGGTTAGGTGCATATGGGCGTGAAGCTAGGGGCTATGGAAGTTATGCTGGGTCAGGCTCGGGTGATGGTTATGATTCAGGCCCTGGTGCTAGTTATGAAGGACCGCGAGGCTTGTACGGTGCTAGTAGGGCAGGATATGGTGGCAGTAGTCGTTACCACCCTTATGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

355

Amino Acids

38.19

Weight (kDa)

7.79

Isoelectric Point (pI)

24.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 21 - 81 1.2e-12 RNA recognition motif
RRM_7 PF16367 107 - 170 2.8e-10 RNA recognition motif
RRM_1 PF00076 109 - 178 8.1e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g40460
malus_domestica MD17G1118700.v1.1 MD17G1277100.v1.1
prunus_persica Prupe.3G195500_v2.0.a1
pyrus_communis pycom17g10900
rosa_chinensis RchiOBHm_Chr2g0155691
rosa_multiflora Rmu_co8436359.1_g000001
rosa_roxburghii Rroxscaffold_2G00093550
rosa_rugosa Rorug02G0449400
rosa_samantha Rh2AG515300 Rh2CG500200 Rh2DG535200
rosa_wichuraiana Rw2G042350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 250
AccB1I GGYRCC 2 cut(s) 290, 607
AccBSI CCGCTC 2 cut(s) 438, 575
AccII CGCG 2 cut(s) 420, 1000
AciI CCGC 6 cut(s) 160, 336, 436, 573, 894, 998
AclWI GGATC 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 574
AfaI GTAC 2 cut(s) 113, 1010
AfiI CCNNNNNNNGG 4 cut(s) 35, 166, 689, 809
AgsI TTSAA 4 cut(s) 233, 313, 370, 384
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 6 cut(s) 8, 52, 222, 664, 808, 976
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 2 cut(s) 302, 920
AluI AGCT 2 cut(s) 302, 920
Alw26I GTCTC 5 cut(s) 92, 230, 568, 591, 794
AlwI GGATC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 977
Ama87I CYCGRG 2 cut(s) 441, 952
AoxI GGCC 5 cut(s) 661, 676, 691, 799, 973
Asp700I GAANNNNTTC 1 cut(s) 374
AspA2I CCTAGG 1 cut(s) 176
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 6 cut(s) 157, 662, 692, 800, 974, 995
AsuHPI GGTGA 1 cut(s) 968
AsuNHI GCTAGC 1 cut(s) 47
AvaI CYCGRG 2 cut(s) 441, 952
AvaII GGWCC 2 cut(s) 157, 995
AvrII CCTAGG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 610
BanI GGYRCC 2 cut(s) 290, 607
BarI GAAGNNNNNNTAC 1 cut(s) 37
BccI CCATC 2 cut(s) 515, 953
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 6 cut(s) 10, 54, 224, 666, 810, 978
BciVI GTATCC 1 cut(s) 849
BcoDI GTCTC 5 cut(s) 92, 230, 568, 591, 794
BfaI CTAG 8 cut(s) 48, 177, 603, 624, 843, 921, 984, 1017
BfmI CTRYAG 1 cut(s) 703
BfoI RGCGCY 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 250
BfuI GTATCC 1 cut(s) 849
BlnI CCTAGG 1 cut(s) 176
BmcAI AGTACT 1 cut(s) 113
Bme1390I CCNGG 6 cut(s) 10, 54, 224, 666, 810, 978
Bme18I GGWCC 2 cut(s) 157, 995
BmeT110I CYCGRG 2 cut(s) 441, 952
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 6 cut(s) 157, 662, 692, 800, 974, 995
BmiI GGNNCC 2 cut(s) 292, 609
BmrFI CCNGG 6 cut(s) 10, 54, 224, 666, 810, 978
BmsI GCATC 2 cut(s) 415, 748
BmtI GCTAGC 1 cut(s) 51
BoxI GACNNNNGTC 1 cut(s) 242
BsaBI GATNNNNATC 2 cut(s) 65, 853
BsaI GGTCTC 3 cut(s) 92, 568, 794
BsaJI CCNNGG 4 cut(s) 52, 176, 664, 976
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 166, 689, 809
Bse1I ACTGG 1 cut(s) 498
Bse8I GATNNNNATC 2 cut(s) 65, 853
BseBI CCWGG 6 cut(s) 10, 54, 224, 666, 810, 978
BseDI CCNNGG 4 cut(s) 52, 176, 664, 976
BseGI GGATG 2 cut(s) 526, 854
BseJI GATNNNNATC 2 cut(s) 65, 853
BseLI CCNNNNNNNGG 4 cut(s) 35, 166, 689, 809
BseMII CTCAG 1 cut(s) 805
BseNI ACTGG 1 cut(s) 498
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 1 cut(s) 610
BseYI CCCAGC 1 cut(s) 941
Bsh1236I CGCG 2 cut(s) 420, 1000
BshFI GGCC 5 cut(s) 663, 678, 693, 801, 975
BshNI GGYRCC 2 cut(s) 290, 607
BsiHKCI CYCGRG 2 cut(s) 441, 952
BsiSI CCGG 2 cut(s) 36, 294
BslI CCNNNNNNNGG 4 cut(s) 35, 166, 689, 809
BsmAI GTCTC 5 cut(s) 92, 230, 568, 591, 794
BsnI GGCC 5 cut(s) 663, 678, 693, 801, 975
Bso31I GGTCTC 3 cut(s) 92, 568, 794
BsoBI CYCGRG 2 cut(s) 441, 952
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 3 cut(s) 205, 411, 537
BspACI CCGC 6 cut(s) 160, 336, 436, 573, 894, 998
BspANI GGCC 5 cut(s) 663, 678, 693, 801, 975
BspCNI CTCAG 1 cut(s) 804
BspFNI CGCG 2 cut(s) 420, 1000
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 292, 609
BspMI ACCTGC 1 cut(s) 250
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 2 cut(s) 290, 607
BspTNI GGTCTC 3 cut(s) 92, 568, 794
BsrBI CCGCTC 2 cut(s) 438, 575
BsrI ACTGG 1 cut(s) 498
BssECI CCNNGG 4 cut(s) 52, 176, 664, 976
BssMI GATC 3 cut(s) 205, 411, 537
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 6 cut(s) 10, 54, 224, 666, 810, 978
Bst4CI ACNGT 2 cut(s) 352, 1013
BstC8I GCNNGC 3 cut(s) 49, 422, 426
BstDEI CTNAG 3 cut(s) 94, 318, 791
BstF5I GGATG 2 cut(s) 526, 854
BstFNI CGCG 2 cut(s) 420, 1000
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 3 cut(s) 208, 414, 540
BstMAI GTCTC 5 cut(s) 92, 230, 568, 591, 794
BstMBI GATC 3 cut(s) 205, 411, 537
BstMWI GCNNNNNNNGC 2 cut(s) 299, 1022
BstNI CCWGG 6 cut(s) 10, 54, 224, 666, 810, 978
BstNSI RCATGY 1 cut(s) 428
BstPAI GACNNNNGTC 1 cut(s) 242
BstSCI CCNGG 6 cut(s) 8, 52, 222, 664, 808, 976
BstSFI CTRYAG 1 cut(s) 703
BstSLI GKGCMC 1 cut(s) 610
BstUI CGCG 2 cut(s) 420, 1000
BstXI CCANNNNNNTGG 1 cut(s) 1058
BsuI GTATCC 1 cut(s) 849
BsuRI GGCC 5 cut(s) 663, 678, 693, 801, 975
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 2 cut(s) 526, 854
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 3 cut(s) 49, 422, 426
CaiI CAGNNNCTG 1 cut(s) 977
CciI TCATGA 1 cut(s) 150
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 6 cut(s) 157, 662, 692, 800, 974, 995
CsiI ACCWGGT 1 cut(s) 222
Csp6I GTAC 2 cut(s) 112, 1009
CviAII CATG 5 cut(s) 151, 425, 578, 620, 713
CviQI GTAC 2 cut(s) 112, 1009
DdeI CTNAG 3 cut(s) 94, 318, 791
DpnI GATC 3 cut(s) 207, 413, 539
DpnII GATC 3 cut(s) 205, 411, 537
Eco130I CCWWGG 1 cut(s) 176
Eco31I GGTCTC 3 cut(s) 92, 568, 794
Eco47I GGWCC 2 cut(s) 157, 995
Eco57I CTGAAG 1 cut(s) 574
Eco88I CYCGRG 2 cut(s) 441, 952
EcoO109I RGGNCCY 1 cut(s) 974
EcoRII CCWGG 6 cut(s) 8, 52, 222, 664, 808, 976
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 5 cut(s) 154, 428, 581, 623, 716
FatI CATG 5 cut(s) 150, 424, 577, 619, 712
FauI CCCGC 3 cut(s) 329, 580, 887
FauNDI CATATG 1 cut(s) 907
FokI GGATG 2 cut(s) 533, 841
FspBI CTAG 8 cut(s) 48, 177, 603, 624, 843, 921, 984, 1017
GlaI GCGC 1 cut(s) 46
GsaI CCCAGC 1 cut(s) 945
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 5 cut(s) 663, 678, 693, 801, 975
HapII CCGG 2 cut(s) 36, 294
HhaI GCGC 1 cut(s) 47
Hin1II CATG 5 cut(s) 154, 428, 581, 623, 716
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 6 cut(s) 140, 238, 340, 599, 824, 968
HpaII CCGG 2 cut(s) 36, 294
HphI GGTGA 1 cut(s) 968
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 4 cut(s) 71, 411, 757, 794
Hpy188III TCNNGA 4 cut(s) 151, 233, 441, 541
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 352, 1013
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 1 cut(s) 905
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 1022
HpyF3I CTNAG 3 cut(s) 94, 318, 791
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 5 cut(s) 154, 428, 581, 623, 716
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 3 cut(s) 205, 411, 537
LmnI GCTCC 1 cut(s) 403
LweI GCATC 2 cut(s) 415, 748
MabI ACCWGGT 1 cut(s) 222
MaeI CTAG 8 cut(s) 48, 177, 603, 624, 843, 921, 984, 1017
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 3 cut(s) 352, 708, 1046
MalI GATC 3 cut(s) 207, 413, 539
MbiI CCGCTC 2 cut(s) 438, 575
MboI GATC 3 cut(s) 205, 411, 537
MboII GAAGA 3 cut(s) 371, 568, 819
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 4 cut(s) 135, 365, 487, 510
MlyI GAGTC 3 cut(s) 134, 232, 593
MnlI CCTC 9 cut(s) 39, 65, 394, 437, 705, 778, 788, 860, 995
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 1056
MspI CCGG 2 cut(s) 36, 294
MspR9I CCNGG 6 cut(s) 10, 54, 224, 666, 810, 978
MvaI CCWGG 6 cut(s) 10, 54, 224, 666, 810, 978
MvnI CGCG 2 cut(s) 420, 1000
MwoI GCNNNNNNNGC 2 cut(s) 299, 1022
NdeI CATATG 1 cut(s) 907
NdeII GATC 3 cut(s) 205, 411, 537
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 5 cut(s) 154, 428, 581, 623, 716
NlaIV GGNNCC 2 cut(s) 292, 609
NmuCI GTSAC 1 cut(s) 708
NspI RCATGY 1 cut(s) 428
PaeI GCATGC 1 cut(s) 428
PaeR7I CTCGAG 1 cut(s) 441
PagI TCATGA 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 3 cut(s) 340, 824, 968
PflFI GACNNNGTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 8
PleI GAGTC 3 cut(s) 134, 232, 593
PpsI GAGTC 3 cut(s) 134, 232, 593
PshAI GACNNNNGTC 1 cut(s) 242
PsiI TTATAA 1 cut(s) 194
Psp6I CCWGG 6 cut(s) 8, 52, 222, 664, 808, 976
PspFI CCCAGC 1 cut(s) 941
PspGI CCWGG 6 cut(s) 8, 52, 222, 664, 808, 976
PspN4I GGNNCC 2 cut(s) 292, 609
PspPI GGNCC 6 cut(s) 157, 662, 692, 800, 974, 995
PstNI CAGNNNCTG 1 cut(s) 977
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 2 cut(s) 113, 1010
RsaNI GTAC 2 cut(s) 112, 1009
RseI CAYNNNNRTG 1 cut(s) 1056
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 3 cut(s) 205, 411, 537
Sau96I GGNCC 6 cut(s) 157, 662, 692, 800, 974, 995
ScaI AGTACT 1 cut(s) 113
SchI GAGTC 3 cut(s) 134, 232, 593
ScrFI CCNGG 6 cut(s) 10, 54, 224, 666, 810, 978
SduI GDGCHC 1 cut(s) 610
SexAI ACCWGGT 1 cut(s) 222
SfaNI GCATC 2 cut(s) 415, 748
SfcI CTRYAG 1 cut(s) 703
Sfr274I CTCGAG 1 cut(s) 441
SinI GGWCC 2 cut(s) 157, 995
SlaI CTCGAG 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 1056
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
SphI GCATGC 1 cut(s) 428
Sse9I AATT 4 cut(s) 135, 365, 487, 510
SsiI CCGC 6 cut(s) 160, 336, 436, 573, 894, 998
SspMI CTAG 8 cut(s) 48, 177, 603, 624, 843, 921, 984, 1017
StyD4I CCNGG 6 cut(s) 8, 52, 222, 664, 808, 976
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 2 cut(s) 352, 1013
TaiI ACGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 442
TasI AATT 4 cut(s) 135, 365, 487, 510
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 3 cut(s) 340, 824, 968
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 1 cut(s) 708
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 7 cut(s) 55, 94, 167, 378, 819, 843, 1005
TspGWI ACGGA 1 cut(s) 834
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 157, 995
XceI RCATGY 1 cut(s) 428
XhoI CTCGAG 1 cut(s) 441
XmaJI CCTAGG 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 8 cut(s) 48, 177, 603, 624, 843, 921, 984, 1017
ZrmI AGTACT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.