Rh2CG500200

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017345
Physical Location & Seq
Forward (+)
67229350 .. 67236565
7216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG500200.1

Sequence Viewer

Length: 984 bp
ATGGAAACAAAGCAGACCTTCATTAAGTACTTTGAGAAGTATGGGGAGATAATTGATTCTGTCATCATGAAGGACCGCCAAACGGGGCTTCCTAGGGGTTTCGGCTTTATAACCTATGCCGATCCTTCTGTTGTTGACCAGGTTATTCAAGAGACTCACGTCATCAATGACAAGCAGGTTGAGATAAAGAGAACCATTCCAAAAGGTGCCGGACAAGCTAATGATTTCAAAACTAAGAAAGTTTTTGTAGGCGGGATTCCAAGAACTGTTACAGAAGATGAATTGAAAGATTTCTTTTCAAAGTATGGTAATGTAGAGGAGCATCAGATCATACGCGAGCATGCCACTAACCGCTCTAGGGGGTTTGGATTTGTTGTATTTGAGAGCGAAAAAGTTGTTGATAATTTGCTGGCAAATGGAAATAAAATTGATATGGATGGAACACAGGTTGAGATCAAGAAGGCTGAACCGAAGAAGGCCTCAAACCCCGCTCATGTTCCTGCCTTCAGTAGAGACTCTAGGGCACCCCCATACCATGCTAGTTATGATTTAGTCGGCAACACATATAGTGGTTATGGCCCTGGTGGTTATGGCCTTCCTTCTTATGGCCCTCCTTCCTATAGGTCACATGGAGAATTTGGCAATAGGTTTGATGATTACAATGGTTATTCAGATGCTAATGATGTTGGTGTTGGTTTTGAGGGTCTCAGAGGTGGTCCTTTTCCTGGTTATCACGGAGATTCTTCATTCGGGTATCCTAGTAGATTTTCATCCTATCGTGGAGGGCTTGGTGGGGGATATGGTGGTAGCGGGTTAGGTGCATATGGGCGTGAAGCTAGGGGCTATGGAAGTTATGCTGGGTCAGGCTCGGGTGATGGTTATGATTCAGGCCCTGGTGCTAGTTATGAAGGACCGCGAGGTTTGTACGGTGCTAGTAGGGCAGGATATGGTGGCAGTAGTCGTTACCACCCTTATGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

327

Amino Acids

35.42

Weight (kDa)

7.1

Isoelectric Point (pI)

24.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 4 - 53 2.1e-08 RNA recognition motif
RRM_7 PF16367 79 - 142 2.4e-10 RNA recognition motif
RRM_1 PF00076 81 - 150 7.1e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g40460
malus_domestica MD17G1118700.v1.1 MD17G1277100.v1.1
prunus_persica Prupe.3G195500_v2.0.a1
pyrus_communis pycom17g10900
rosa_chinensis RchiOBHm_Chr2g0155691
rosa_multiflora Rmu_co8436359.1_g000001
rosa_roxburghii Rroxscaffold_2G00093550
rosa_rugosa Rorug02G0449400
rosa_samantha Rh2AG515300 Rh2CG500200 Rh2DG535200
rosa_wichuraiana Rw2G042350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 166
AccB1I GGYRCC 2 cut(s) 206, 523
AccBSI CCGCTC 2 cut(s) 354, 491
AccII CGCG 2 cut(s) 336, 916
AciI CCGC 6 cut(s) 76, 252, 352, 489, 810, 914
AclWI GGATC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 635
AcuI CTGAAG 1 cut(s) 490
AfaI GTAC 2 cut(s) 29, 926
AfiI CCNNNNNNNGG 4 cut(s) 82, 358, 605, 725
AgsI TTSAA 4 cut(s) 149, 229, 286, 300
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 4 cut(s) 138, 580, 724, 892
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 2 cut(s) 218, 836
AluI AGCT 2 cut(s) 218, 836
Alw26I GTCTC 3 cut(s) 146, 507, 710
AlwI GGATC 1 cut(s) 116
AlwNI CAGNNNCTG 1 cut(s) 893
Ama87I CYCGRG 1 cut(s) 868
AoxI GGCC 5 cut(s) 477, 577, 592, 607, 889
ApoI RAATTY 1 cut(s) 635
Asp700I GAANNNNTTC 1 cut(s) 290
AspA2I CCTAGG 1 cut(s) 92
AspS9I GGNCC 6 cut(s) 73, 578, 608, 716, 890, 911
AsuHPI GGTGA 1 cut(s) 884
AvaI CYCGRG 1 cut(s) 868
AvaII GGWCC 3 cut(s) 73, 716, 911
AvrII CCTAGG 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 526
BanI GGYRCC 2 cut(s) 206, 523
BccI CCATC 2 cut(s) 431, 869
BciT130I CCWGG 4 cut(s) 140, 582, 726, 894
BciVI GTATCC 1 cut(s) 765
BcoDI GTCTC 3 cut(s) 146, 507, 710
BfaI CTAG 8 cut(s) 93, 357, 519, 540, 759, 837, 900, 933
BfmI CTRYAG 1 cut(s) 619
BfuAI ACCTGC 1 cut(s) 166
BfuI GTATCC 1 cut(s) 765
BlnI CCTAGG 1 cut(s) 92
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 4 cut(s) 140, 582, 726, 894
Bme18I GGWCC 3 cut(s) 73, 716, 911
BmeT110I CYCGRG 1 cut(s) 868
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 6 cut(s) 73, 578, 608, 716, 890, 911
BmiI GGNNCC 2 cut(s) 208, 525
BmrFI CCNGG 4 cut(s) 140, 582, 726, 894
BmsI GCATC 2 cut(s) 331, 664
BoxI GACNNNNGTC 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 769
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 3 cut(s) 92, 580, 892
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 358, 605, 725
Bse8I GATNNNNATC 1 cut(s) 769
BseBI CCWGG 4 cut(s) 140, 582, 726, 894
BseDI CCNNGG 3 cut(s) 92, 580, 892
BseGI GGATG 2 cut(s) 442, 770
BseJI GATNNNNATC 1 cut(s) 769
BseLI CCNNNNNNNGG 4 cut(s) 82, 358, 605, 725
BseMII CTCAG 1 cut(s) 721
BseRI GAGGAG 1 cut(s) 332
BseSI GKGCMC 1 cut(s) 526
BseYI CCCAGC 1 cut(s) 857
Bsh1236I CGCG 2 cut(s) 336, 916
BshFI GGCC 5 cut(s) 479, 579, 594, 609, 891
BshNI GGYRCC 2 cut(s) 206, 523
BsiHKCI CYCGRG 1 cut(s) 868
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 4 cut(s) 82, 358, 605, 725
BsmAI GTCTC 3 cut(s) 146, 507, 710
BsnI GGCC 5 cut(s) 479, 579, 594, 609, 891
Bso31I GGTCTC 1 cut(s) 710
BsoBI CYCGRG 1 cut(s) 868
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 3 cut(s) 121, 327, 453
BspACI CCGC 6 cut(s) 76, 252, 352, 489, 810, 914
BspANI GGCC 5 cut(s) 479, 579, 594, 609, 891
BspCNI CTCAG 1 cut(s) 720
BspFNI CGCG 2 cut(s) 336, 916
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 208, 525
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 1 cut(s) 116
BspT107I GGYRCC 2 cut(s) 206, 523
BspTNI GGTCTC 1 cut(s) 710
BsrBI CCGCTC 2 cut(s) 354, 491
BssECI CCNNGG 3 cut(s) 92, 580, 892
BssMI GATC 3 cut(s) 121, 327, 453
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 4 cut(s) 140, 582, 726, 894
Bst4CI ACNGT 2 cut(s) 268, 929
BstC8I GCNNGC 3 cut(s) 338, 342, 411
BstDEI CTNAG 2 cut(s) 234, 707
BstF5I GGATG 2 cut(s) 442, 770
BstFNI CGCG 2 cut(s) 336, 916
BstKTI GATC 3 cut(s) 124, 330, 456
BstMAI GTCTC 3 cut(s) 146, 507, 710
BstMBI GATC 3 cut(s) 121, 327, 453
BstMWI GCNNNNNNNGC 2 cut(s) 215, 938
BstNI CCWGG 4 cut(s) 140, 582, 726, 894
BstNSI RCATGY 1 cut(s) 344
BstPAI GACNNNNGTC 1 cut(s) 158
BstSCI CCNGG 4 cut(s) 138, 580, 724, 892
BstSFI CTRYAG 1 cut(s) 619
BstSLI GKGCMC 1 cut(s) 526
BstUI CGCG 2 cut(s) 336, 916
BstXI CCANNNNNNTGG 1 cut(s) 974
BsuI GTATCC 1 cut(s) 765
BsuRI GGCC 5 cut(s) 479, 579, 594, 609, 891
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 2 cut(s) 442, 770
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 3 cut(s) 338, 342, 411
CaiI CAGNNNCTG 1 cut(s) 893
CciI TCATGA 1 cut(s) 66
Cfr13I GGNCC 6 cut(s) 73, 578, 608, 716, 890, 911
CsiI ACCWGGT 1 cut(s) 138
Csp6I GTAC 2 cut(s) 28, 925
CviAII CATG 5 cut(s) 67, 341, 494, 536, 629
CviQI GTAC 2 cut(s) 28, 925
DdeI CTNAG 2 cut(s) 234, 707
DpnI GATC 3 cut(s) 123, 329, 455
DpnII GATC 3 cut(s) 121, 327, 453
Eco130I CCWWGG 1 cut(s) 92
Eco147I AGGCCT 1 cut(s) 479
Eco31I GGTCTC 1 cut(s) 710
Eco47I GGWCC 3 cut(s) 73, 716, 911
Eco57I CTGAAG 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 868
EcoO109I RGGNCCY 1 cut(s) 890
EcoRII CCWGG 4 cut(s) 138, 580, 724, 892
EcoT14I CCWWGG 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 5 cut(s) 70, 344, 497, 539, 632
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 5 cut(s) 66, 340, 493, 535, 628
FauI CCCGC 3 cut(s) 245, 496, 803
FauNDI CATATG 1 cut(s) 823
FokI GGATG 2 cut(s) 449, 757
FspBI CTAG 8 cut(s) 93, 357, 519, 540, 759, 837, 900, 933
GsaI CCCAGC 1 cut(s) 861
HaeIII GGCC 5 cut(s) 479, 579, 594, 609, 891
HapII CCGG 1 cut(s) 210
Hin1II CATG 5 cut(s) 70, 344, 497, 539, 632
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 6 cut(s) 56, 154, 256, 515, 740, 884
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 327, 673, 710
Hpy188III TCNNGA 3 cut(s) 67, 149, 457
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 268, 929
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 821
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 938
HpyF3I CTNAG 2 cut(s) 234, 707
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 5 cut(s) 70, 344, 497, 539, 632
Kzo9I GATC 3 cut(s) 121, 327, 453
LmnI GCTCC 1 cut(s) 319
LweI GCATC 2 cut(s) 331, 664
MabI ACCWGGT 1 cut(s) 138
MaeI CTAG 8 cut(s) 93, 357, 519, 540, 759, 837, 900, 933
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 3 cut(s) 268, 624, 962
MalI GATC 3 cut(s) 123, 329, 455
MbiI CCGCTC 2 cut(s) 354, 491
MboI GATC 3 cut(s) 121, 327, 453
MboII GAAGA 3 cut(s) 287, 484, 735
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 5 cut(s) 51, 281, 403, 426, 635
MlyI GAGTC 2 cut(s) 148, 509
MnlI CCTC 7 cut(s) 310, 490, 621, 694, 704, 776, 911
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 972
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 4 cut(s) 140, 582, 726, 894
MvaI CCWGG 4 cut(s) 140, 582, 726, 894
MvnI CGCG 2 cut(s) 336, 916
MwoI GCNNNNNNNGC 2 cut(s) 215, 938
NdeI CATATG 1 cut(s) 823
NdeII GATC 3 cut(s) 121, 327, 453
NlaIII CATG 5 cut(s) 70, 344, 497, 539, 632
NlaIV GGNNCC 2 cut(s) 208, 525
NmuCI GTSAC 1 cut(s) 624
NspI RCATGY 1 cut(s) 344
PaeI GCATGC 1 cut(s) 344
PagI TCATGA 1 cut(s) 66
PceI AGGCCT 1 cut(s) 479
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 4 cut(s) 56, 256, 740, 884
PleI GAGTC 2 cut(s) 148, 509
PpsI GAGTC 2 cut(s) 148, 509
PshAI GACNNNNGTC 1 cut(s) 158
PsiI TTATAA 1 cut(s) 110
Psp6I CCWGG 4 cut(s) 138, 580, 724, 892
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 4 cut(s) 138, 580, 724, 892
PspN4I GGNNCC 2 cut(s) 208, 525
PspPI GGNCC 6 cut(s) 73, 578, 608, 716, 890, 911
PstNI CAGNNNCTG 1 cut(s) 893
RsaI GTAC 2 cut(s) 29, 926
RsaNI GTAC 2 cut(s) 28, 925
RseI CAYNNNNRTG 1 cut(s) 972
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 3 cut(s) 121, 327, 453
Sau96I GGNCC 6 cut(s) 73, 578, 608, 716, 890, 911
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 2 cut(s) 148, 509
ScrFI CCNGG 4 cut(s) 140, 582, 726, 894
SduI GDGCHC 1 cut(s) 526
SexAI ACCWGGT 1 cut(s) 138
SfaNI GCATC 2 cut(s) 331, 664
SfcI CTRYAG 1 cut(s) 619
SinI GGWCC 3 cut(s) 73, 716, 911
SmiMI CAYNNNNRTG 1 cut(s) 972
SphI GCATGC 1 cut(s) 344
Sse9I AATT 5 cut(s) 51, 281, 403, 426, 635
SseBI AGGCCT 1 cut(s) 479
SsiI CCGC 6 cut(s) 76, 252, 352, 489, 810, 914
SspMI CTAG 8 cut(s) 93, 357, 519, 540, 759, 837, 900, 933
StuI AGGCCT 1 cut(s) 479
StyD4I CCNGG 4 cut(s) 138, 580, 724, 892
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 268, 929
TaiI ACGT 1 cut(s) 162
TasI AATT 5 cut(s) 51, 281, 403, 426, 635
TatI WGTACW 1 cut(s) 27
TfiI GAWTC 4 cut(s) 56, 256, 740, 884
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseFI GTSAC 1 cut(s) 624
Tsp45I GTSAC 1 cut(s) 624
TspDTI ATGAA 6 cut(s) 10, 83, 294, 735, 759, 921
TspGWI ACGGA 1 cut(s) 750
VpaK11BI GGWCC 3 cut(s) 73, 716, 911
XapI RAATTY 1 cut(s) 635
XceI RCATGY 1 cut(s) 344
XmaJI CCTAGG 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 8 cut(s) 93, 357, 519, 540, 759, 837, 900, 933
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.