FvH4_6g40600

Nuclear transcription factor Y subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016477
Physical Location & Seq
Reverse (-)
32072198 .. 32074142
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40600.t1

Sequence Viewer

Length: 774 bp
ATGGCCGACTCGGACAACGACTCCGGCGGCCACAACGGCCACTCGCAGGGCGGTGAGCTCTCGGCGCGTGAGCAGGACCGGTTCCTCCCGATCGCGAACGTCAGCCGCATCATGAAGAAGGCATTGCCGGCGAACGCCAAGATCTCCAAGGACGCCAAAGAGACCGTGCAGGAGTGCGTCTCCGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACCATCAACGGCGACGATCTCCTCTGGGCCATGACCACCTTGGGATTCGAGGAGTACGTCGAGCCCCTCAAGATCTATCTCCAGAAGTACCGCGAGATGGAGGGCGAGAAAGGCGCCGCCGTCGGAACCGCCGGTCGCGACAAGGACGGCGGCTCCGGCGGCGGAGGATCGGCTGCAGGCGGCGGCGGCGGCGGGGGAGGAGGAAGTAGCGGAGGCGGATTGAGCTCCGGGACCAGCGGAGGAGGCGGCGCGTTTAATGGTGTTTATGGCGGGATGGGAATGCTAGGTCATCATCAGGGACACGTGTACGGCTCGGGCGGGTATCAACATCAAATGGGAGTTGGAGTTGGAGCGGAGAAGCGCAGTGGTTCCGGCGGCGGAGCTTCGGTGAGGTCAAGGTTGAGAATTCAAGACTATTCTTGTGATGGTCAGGCTATGCTTGCATCAGAATATACATATGTGAAATCACTAGCAGAGACCCAAGTAGCAGTTGGCAGACCCAAGCAGCCCAAGAATGTTATTACCAACTAG

Protein Analysis

258

Amino Acids

26.38

Weight (kDa)

7.01

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 28 - 92 2.2e-27 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14540
fragaria_vesca FvH4_6g40600
malus_domestica MD09G1126900.v1.1
prunus_persica Prupe.3G197300_v2.0.a1
pyrus_communis pycom09g05110
rosa_chinensis RchiOBHm_Chr2g0155961
rosa_laevigata RLG00000020878
rosa_multiflora Rmu_sc0000260.1_g000028
rosa_rugosa Rorug02G0450900
rosa_samantha Rh2AG517500 Rh2BG528800 Rh2CG502200 Rh2DG537900
rosa_wichuraiana Rw2G042610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 596
AccII CGCG 6 cut(s) 67, 95, 231, 336, 381, 494
AclWI GGATC 1 cut(s) 418
AcoI YGGCCR 3 cut(s) 3, 28, 37
AcsI RAATTY 1 cut(s) 648
AcvI CACGTG 1 cut(s) 547
AcyI GRCGYC 2 cut(s) 153, 357
AfaI GTAC 3 cut(s) 299, 332, 551
AfiI CCNNNNNNNGG 2 cut(s) 46, 340
AflIII ACRYGT 2 cut(s) 544, 546
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 1 cut(s) 653
AluBI AGCT 4 cut(s) 58, 195, 468, 626
AluI AGCT 4 cut(s) 58, 195, 468, 626
Alw21I GWGCWC 2 cut(s) 60, 470
Alw26I GTCTC 3 cut(s) 155, 184, 713
AlwI GGATC 1 cut(s) 418
Ama87I CYCGRG 1 cut(s) 556
AoxI GGCC 5 cut(s) 3, 28, 37, 210, 270
ApeKI GCWGC 2 cut(s) 416, 748
ApoI RAATTY 1 cut(s) 648
AsiGI ACCGGT 1 cut(s) 78
AspLEI GCGC 6 cut(s) 67, 231, 240, 359, 494, 606
AspS9I GGNCC 3 cut(s) 76, 270, 474
AsuC2I CCSGG 1 cut(s) 472
AsuHPI GGTGA 3 cut(s) 65, 193, 643
AvaI CYCGRG 1 cut(s) 556
AvaII GGWCC 2 cut(s) 76, 474
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 3 cut(s) 60, 309, 470
BbrPI CACGTG 1 cut(s) 547
Bbv12I GWGCWC 2 cut(s) 60, 470
BbvI GCAGC 2 cut(s) 403, 760
BccI CCATC 4 cut(s) 254, 334, 511, 662
BceAI ACGGC 5 cut(s) 52, 268, 347, 406, 568
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 3 cut(s) 155, 184, 713
BfaI CTAG 3 cut(s) 527, 713, 772
BfmI CTRYAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 360
BglI GCCNNNNNGGC 1 cut(s) 36
BglII AGATCT 2 cut(s) 141, 315
Bme1390I CCNGG 1 cut(s) 472
Bme18I GGWCC 2 cut(s) 76, 474
BmeT110I CYCGRG 1 cut(s) 556
BmgT120I GGNCC 3 cut(s) 76, 270, 474
BmiI GGNNCC 6 cut(s) 83, 358, 370, 397, 475, 613
BmrFI CCNGG 1 cut(s) 472
BmsI GCATC 2 cut(s) 117, 695
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 472
BsaAI YACGTR 1 cut(s) 547
BsaHI GRCGYC 2 cut(s) 153, 357
BsaI GGTCTC 2 cut(s) 155, 713
BsaJI CCNNGG 2 cut(s) 147, 282
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 8 cut(s) 5, 35, 380, 410, 573, 603, 615, 645
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 340
Bse118I RCCGGY 4 cut(s) 78, 127, 203, 374
Bse3DI GCAATG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 147, 282
BseGI GGATG 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 46, 340
BseMI GCAATG 1 cut(s) 122
BseRI GAGGAG 4 cut(s) 254, 308, 456, 498
BseXI GCAGC 2 cut(s) 403, 760
BsgI GTGCAG 1 cut(s) 188
Bsh1236I CGCG 6 cut(s) 67, 95, 231, 336, 381, 494
Bsh1285I CGRYCG 2 cut(s) 93, 379
BshFI GGCC 5 cut(s) 5, 30, 39, 212, 272
BshNI GGYRCC 1 cut(s) 356
BshTI ACCGGT 1 cut(s) 78
BsiEI CGRYCG 2 cut(s) 93, 379
BsiHKAI GWGCWC 2 cut(s) 60, 470
BsiHKCI CYCGRG 1 cut(s) 556
BsiSI CCGG 8 cut(s) 24, 79, 128, 204, 375, 399, 471, 615
BslFI GGGAC 2 cut(s) 487, 555
BslI CCNNNNNNNGG 2 cut(s) 46, 340
BsmAI GTCTC 3 cut(s) 155, 184, 713
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 2 cut(s) 487, 555
BsmI GAATGC 1 cut(s) 528
BsnI GGCC 5 cut(s) 5, 30, 39, 212, 272
Bso31I GGTCTC 2 cut(s) 155, 713
BsoBI CYCGRG 1 cut(s) 556
Bsp1286I GDGCHC 3 cut(s) 60, 309, 470
Bsp143I GATC 5 cut(s) 90, 141, 259, 315, 410
Bsp68I TCGCGA 2 cut(s) 95, 381
BspANI GGCC 5 cut(s) 5, 30, 39, 212, 272
BspFNI CGCG 6 cut(s) 67, 95, 231, 336, 381, 494
BspHI TCATGA 1 cut(s) 111
BspLI GGNNCC 6 cut(s) 83, 358, 370, 397, 475, 613
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 1 cut(s) 418
BspT107I GGYRCC 1 cut(s) 356
BspTNI GGTCTC 2 cut(s) 155, 713
BsrBI CCGCTC 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 122
BsrFI RCCGGY 4 cut(s) 78, 127, 203, 374
BssAI RCCGGY 4 cut(s) 78, 127, 203, 374
BssECI CCNNGG 2 cut(s) 147, 282
BssMI GATC 5 cut(s) 90, 141, 259, 315, 410
BssNI GRCGYC 2 cut(s) 153, 357
BssT1I CCWWGG 2 cut(s) 147, 282
Bst4CI ACNGT 1 cut(s) 166
BstACI GRCGYC 2 cut(s) 153, 357
BstBAI YACGTR 1 cut(s) 547
BstC8I GCNNGC 4 cut(s) 129, 227, 421, 684
BstF5I GGATG 1 cut(s) 522
BstFNI CGCG 6 cut(s) 67, 95, 231, 336, 381, 494
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 6 cut(s) 67, 231, 240, 359, 494, 606
BstKTI GATC 5 cut(s) 93, 144, 262, 318, 413
BstMAI GTCTC 3 cut(s) 155, 184, 713
BstMBI GATC 5 cut(s) 90, 141, 259, 315, 410
BstMCI CGRYCG 2 cut(s) 93, 379
BstSCI CCNGG 1 cut(s) 470
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 6 cut(s) 67, 95, 231, 336, 381, 494
BstV1I GCAGC 2 cut(s) 403, 760
BstX2I RGATCY 2 cut(s) 141, 315
BstYI RGATCY 2 cut(s) 141, 315
BsuRI GGCC 5 cut(s) 5, 30, 39, 212, 272
BtsCI GGATG 1 cut(s) 522
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 1 cut(s) 613
BtuMI TCGCGA 2 cut(s) 95, 381
Cac8I GCNNGC 4 cut(s) 129, 227, 421, 684
CciI TCATGA 1 cut(s) 111
CfoI GCGC 6 cut(s) 67, 231, 240, 359, 494, 606
Cfr10I RCCGGY 4 cut(s) 78, 127, 203, 374
Cfr13I GGNCC 3 cut(s) 76, 270, 474
CseI GACGC 2 cut(s) 161, 166
Csp6I GTAC 3 cut(s) 298, 331, 550
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 2 cut(s) 112, 274
CviQI GTAC 3 cut(s) 298, 331, 550
DinI GGCGCC 1 cut(s) 358
DpnI GATC 5 cut(s) 92, 143, 261, 317, 412
DpnII GATC 5 cut(s) 90, 141, 259, 315, 410
EaeI YGGCCR 3 cut(s) 3, 28, 37
EciI GGCGGA 3 cut(s) 420, 474, 636
Ecl136II GAGCTC 2 cut(s) 58, 468
Eco130I CCWWGG 2 cut(s) 147, 282
Eco147I AGGCCT 1 cut(s) 212
Eco24I GRGCYC 3 cut(s) 60, 309, 470
Eco31I GGTCTC 2 cut(s) 155, 713
Eco47I GGWCC 2 cut(s) 76, 474
Eco53kI GAGCTC 2 cut(s) 58, 468
Eco72I CACGTG 1 cut(s) 547
Eco88I CYCGRG 1 cut(s) 556
EcoICRI GAGCTC 2 cut(s) 58, 468
EcoRI GAATTC 1 cut(s) 648
EcoT14I CCWWGG 2 cut(s) 147, 282
EcoT38I GRGCYC 3 cut(s) 60, 309, 470
EgeI GGCGCC 1 cut(s) 358
EheI GGCGCC 1 cut(s) 358
ErhI CCWWGG 2 cut(s) 147, 282
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 2 cut(s) 115, 277
FaiI YATR 7 cut(s) 113, 275, 510, 680, 696, 700, 702
FaqI GGGAC 2 cut(s) 487, 555
FatI CATG 2 cut(s) 111, 273
FauI CCCGC 3 cut(s) 428, 506, 554
FauNDI CATATG 1 cut(s) 700
FokI GGATG 1 cut(s) 529
FriOI GRGCYC 3 cut(s) 60, 309, 470
FspBI CTAG 3 cut(s) 527, 713, 772
GlaI GCGC 6 cut(s) 66, 230, 239, 358, 493, 605
GsuI CTGGAG 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 5 cut(s) 5, 30, 39, 212, 272
HapII CCGG 8 cut(s) 24, 79, 128, 204, 375, 399, 471, 615
HgaI GACGC 2 cut(s) 161, 166
HhaI GCGC 6 cut(s) 67, 231, 240, 359, 494, 606
Hin1I GRCGYC 2 cut(s) 153, 357
Hin1II CATG 2 cut(s) 115, 277
Hin6I GCGC 6 cut(s) 65, 229, 238, 357, 492, 604
HinP1I GCGC 6 cut(s) 65, 229, 238, 357, 492, 604
HinfI GANTC 3 cut(s) 8, 20, 288
HpaII CCGG 8 cut(s) 24, 79, 128, 204, 375, 399, 471, 615
HphI GGTGA 3 cut(s) 65, 193, 643
Hpy166II GTNNAC 1 cut(s) 550
Hpy188I TCNGA 5 cut(s) 13, 184, 217, 368, 691
Hpy188III TCNNGA 7 cut(s) 88, 94, 112, 313, 325, 380, 653
Hpy8I GTNNAC 1 cut(s) 550
Hpy99I CGWCG 3 cut(s) 260, 305, 368
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 3 cut(s) 99, 300, 546
HpyCH4V TGCA 3 cut(s) 169, 419, 686
HpySE526I ACGT 3 cut(s) 99, 300, 546
Hsp92I GRCGYC 2 cut(s) 153, 357
Hsp92II CATG 2 cut(s) 115, 277
HspAI GCGC 6 cut(s) 65, 229, 238, 357, 492, 604
KasI GGCGCC 1 cut(s) 356
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
Kzo9I GATC 5 cut(s) 90, 141, 259, 315, 410
LmnI GCTCC 4 cut(s) 401, 473, 593, 623
Lsp1109I GCAGC 2 cut(s) 403, 760
LweI GCATC 2 cut(s) 117, 695
MaeI CTAG 3 cut(s) 527, 713, 772
MaeII ACGT 3 cut(s) 99, 300, 546
MaeIII GTNAC 1 cut(s) 199
MalI GATC 5 cut(s) 92, 143, 261, 317, 412
MbiI CCGCTC 1 cut(s) 596
MboI GATC 5 cut(s) 90, 141, 259, 315, 410
MboII GAAGA 1 cut(s) 127
MflI RGATCY 2 cut(s) 141, 315
MhlI GDGCHC 3 cut(s) 60, 309, 470
MluCI AATT 1 cut(s) 648
Mly113I GGCGCC 1 cut(s) 357
MlyI GAGTC 2 cut(s) 2, 14
MmeI TCCRAC 4 cut(s) 240, 346, 565, 571
MroNI GCCGGC 1 cut(s) 127
MseI TTAA 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 480
MspI CCGG 8 cut(s) 24, 79, 128, 204, 375, 399, 471, 615
MspR9I CCNGG 1 cut(s) 472
Mva1269I GAATGC 1 cut(s) 528
MvnI CGCG 6 cut(s) 67, 95, 231, 336, 381, 494
NaeI GCCGGC 1 cut(s) 129
NarI GGCGCC 1 cut(s) 357
NciI CCSGG 1 cut(s) 472
NdeI CATATG 1 cut(s) 700
NdeII GATC 5 cut(s) 90, 141, 259, 315, 410
NgoMIV GCCGGC 1 cut(s) 127
NlaIII CATG 2 cut(s) 115, 277
NlaIV GGNNCC 6 cut(s) 83, 358, 370, 397, 475, 613
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 199
NruI TCGCGA 2 cut(s) 95, 381
PagI TCATGA 1 cut(s) 111
PceI AGGCCT 1 cut(s) 212
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 297
PctI GAATGC 1 cut(s) 528
PdiI GCCGGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 288
PfoI TCCNGGA 1 cut(s) 470
PinAI ACCGGT 1 cut(s) 78
Ple19I CGATCG 1 cut(s) 93
PleI GAGTC 2 cut(s) 2, 14
PluTI GGCGCC 1 cut(s) 360
PmaCI CACGTG 1 cut(s) 547
PmlI CACGTG 1 cut(s) 547
PpsI GAGTC 2 cut(s) 2, 14
Ppu21I YACGTR 1 cut(s) 547
Psp124BI GAGCTC 2 cut(s) 60, 470
PspCI CACGTG 1 cut(s) 547
PspN4I GGNNCC 6 cut(s) 83, 358, 370, 397, 475, 613
PspPI GGNCC 3 cut(s) 76, 270, 474
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 2 cut(s) 141, 315
PvuI CGATCG 1 cut(s) 93
RruI TCGCGA 2 cut(s) 95, 381
RsaI GTAC 3 cut(s) 299, 332, 551
RsaNI GTAC 3 cut(s) 298, 331, 550
SacI GAGCTC 2 cut(s) 60, 470
SaqAI TTAA 1 cut(s) 498
Sau3AI GATC 5 cut(s) 90, 141, 259, 315, 410
Sau96I GGNCC 3 cut(s) 76, 270, 474
SchI GAGTC 2 cut(s) 2, 14
ScrFI CCNGG 1 cut(s) 472
SduI GDGCHC 3 cut(s) 60, 309, 470
SfaNI GCATC 2 cut(s) 117, 695
SfcI CTRYAG 1 cut(s) 417
SfiI GGCCNNNNNGGCC 1 cut(s) 36
SfoI GGCGCC 1 cut(s) 358
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 2 cut(s) 76, 474
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 1 cut(s) 648
SseBI AGGCCT 1 cut(s) 212
SspDI GGCGCC 1 cut(s) 356
SspMI CTAG 3 cut(s) 527, 713, 772
SstI GAGCTC 2 cut(s) 60, 470
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 2 cut(s) 147, 282
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 3 cut(s) 102, 303, 549
TaqI TCGA 2 cut(s) 291, 303
TasI AATT 1 cut(s) 648
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 2 cut(s) 416, 748
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 128, 178
TspRI CASTG 1 cut(s) 613
VpaK11BI GGWCC 2 cut(s) 76, 474
XapI RAATTY 1 cut(s) 648
XcmI CCANNNNNNNNNTGG 2 cut(s) 280, 731
XspI CTAG 3 cut(s) 527, 713, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.