Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016477

Physical Location & Seq

Genomic Coordinates Reverse (-)

20770866 .. 20771306

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G197300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCGATTCGGACAACGACTCGGGCGGGAACAACGACGGCAGCCACGCGCAGAGCAGGGAGCTGTCGGCGCGTGAACAGGACCGATTCCTGCCGATCGCTAACGTGAGCCGGATCATGAAGAAGGCGTTGCCGGCGAACGCGAAGATCTCGAAGGATGCGAAGGAGACGGTCTTCGTCACCGGAGAGGCCTCCGACAAGTGCCAGAGGGAGAAGAGGAAGACGATCAACAGCGACGATTTGCTCTGGGCGATGACGACGCTAAGGTTCGAGGAGTACATGGAGCCGCTCAAGGTTTATCTGCATAAGTATCGGGAGCTGGAGGGCGAGAAGACCATCATGGGCGGCAGAGACAAGGATAGTGCAGGCGGAGGCGGTGGGGGACTTCCGGTGGAGGTGGCGGTGACGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

138

Amino Acids

15.05

Weight (kDa)

5.75

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14540
fragaria_vesca	FvH4_6g40600
malus_domestica	MD09G1126900.v1.1
prunus_persica	Prupe.3G197300_v2.0.a1
pyrus_communis	pycom09g05110
rosa_chinensis	RchiOBHm_Chr2g0155961
rosa_laevigata	RLG00000020878
rosa_multiflora	Rmu_sc0000260.1_g000028
rosa_rugosa	Rorug02G0450900
rosa_samantha	Rh2AG517500 Rh2BG528800 Rh2CG502200 Rh2DG537900
rosa_wichuraiana	Rw2G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	289
AccII	CGCG	3 cut(s)	50, 73, 143
AciI	CCGC	6 cut(s)	27, 287, 345, 369, 375, 401
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	278
AluBI	AGCT	2 cut(s)	64, 319
AluI	AGCT	2 cut(s)	64, 319
Alw26I	GTCTC	2 cut(s)	161, 345
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	3, 189
ApeKI	GCWGC	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	52, 73
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	82
BbsI	GAAGAC	3 cut(s)	166, 227, 338
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BcoDI	GTCTC	2 cut(s)	161, 345
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	3 cut(s)	43, 287, 346
BlsI	GCNGC	3 cut(s)	44, 288, 347
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	285
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	3 cut(s)	166, 227, 338
BpmI	CTGGAG	1 cut(s)	341
Bpu10I	CCTNAGC	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	275
BsaWI	WCCGGW	2 cut(s)	182, 388
Bse118I	RCCGGY	1 cut(s)	133
BseGI	GGATG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	384
Bsh1236I	CGCG	3 cut(s)	50, 73, 143
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	5, 191
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	4 cut(s)	112, 134, 183, 389
BslFI	GGGAC	1 cut(s)	396
BsmAI	GTCTC	2 cut(s)	161, 345
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	396
BsnI	GGCC	2 cut(s)	5, 191
BsoBI	CYCGRG	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	96, 114, 147, 225
BspACI	CCGC	6 cut(s)	27, 287, 345, 369, 375, 401
BspANI	GGCC	2 cut(s)	5, 191
BspFNI	CGCG	3 cut(s)	50, 73, 143
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	285
BspPI	GGATC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssMI	GATC	4 cut(s)	96, 114, 147, 225
Bst4CI	ACNGT	2 cut(s)	172, 409
Bst6I	CTCTTC	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	135, 367
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	3 cut(s)	50, 73, 143
BstHHI	GCGC	2 cut(s)	52, 73
BstKTI	GATC	4 cut(s)	99, 117, 150, 228
BstMAI	GTCTC	2 cut(s)	161, 345
BstMBI	GATC	4 cut(s)	96, 114, 147, 225
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 134
BstUI	CGCG	3 cut(s)	50, 73, 143
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	3 cut(s)	166, 227, 338
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	5, 191
BtgZI	GCGATG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	135, 367
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	2 cut(s)	52, 73
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	82
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	3 cut(s)	118, 280, 340
CviJI	RGCY	7 cut(s)	5, 45, 64, 111, 191, 286, 319
CviKI_1	RGCY	7 cut(s)	5, 45, 64, 111, 191, 286, 319
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	4 cut(s)	98, 116, 149, 227
DpnII	GATC	4 cut(s)	96, 114, 147, 225
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	3 cut(s)	121, 283, 343
FaiI	YATR	4 cut(s)	119, 281, 306, 341
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	3 cut(s)	117, 279, 339
FauI	CCCGC	1 cut(s)	20
Fnu4HI	GCNGC	3 cut(s)	43, 287, 346
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	3 cut(s)	43, 287, 346
GlaI	GCGC	2 cut(s)	51, 72
GluI	GCNGC	3 cut(s)	43, 287, 346
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	5, 191
HapII	CCGG	4 cut(s)	112, 134, 183, 389
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	2 cut(s)	52, 73
Hin1II	CATG	3 cut(s)	121, 283, 343
Hin6I	GCGC	2 cut(s)	50, 71
HinP1I	GCGC	2 cut(s)	50, 71
HinfI	GANTC	3 cut(s)	8, 20, 87
HpaII	CCGG	4 cut(s)	112, 134, 183, 389
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	2 cut(s)	13, 196
Hpy188III	TCNNGA	3 cut(s)	118, 151, 314
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	3 cut(s)	41, 239, 262
HpyAV	CCTTC	3 cut(s)	118, 148, 157
HpyCH4III	ACNGT	2 cut(s)	172, 409
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	304, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 134
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	121, 283, 343
HspAI	GCGC	2 cut(s)	50, 71
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	96, 114, 147, 225
LmnI	GCTCC	3 cut(s)	61, 283, 316
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	178, 403
MalI	GATC	4 cut(s)	98, 116, 149, 227
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	4 cut(s)	96, 114, 147, 225
MboII	GAAGA	6 cut(s)	133, 157, 166, 226, 232, 343
MflI	RGATCY	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	8 cut(s)	181, 201, 202, 210, 265, 316, 365, 388
MroNI	GCCGGC	1 cut(s)	133
MspI	CCGG	4 cut(s)	112, 134, 183, 389
MvnI	CGCG	3 cut(s)	50, 73, 143
MwoI	GCNNNNNNNGC	2 cut(s)	70, 134
NaeI	GCCGGC	1 cut(s)	135
NdeII	GATC	4 cut(s)	96, 114, 147, 225
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	3 cut(s)	121, 283, 343
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	2 cut(s)	178, 403
PagI	TCATGA	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	8, 87
PkrI	GCNGC	3 cut(s)	44, 288, 347
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	147
PvuI	CGATCG	1 cut(s)	99
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SatI	GCNGC	3 cut(s)	43, 287, 346
Sau3AI	GATC	4 cut(s)	96, 114, 147, 225
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	14
SetI	ASST	6 cut(s)	66, 108, 269, 297, 321, 399
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SseBI	AGGCCT	1 cut(s)	191
SsiI	CCGC	6 cut(s)	27, 287, 345, 369, 375, 401
StuI	AGGCCT	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	172, 409
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	152, 270
TaqII	GACCGA	1 cut(s)	99
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	2 cut(s)	289, 348
TfiI	GAWTC	2 cut(s)	8, 87
TseFI	GTSAC	2 cut(s)	178, 403
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	2 cut(s)	178, 403
TspDTI	ATGAA	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.