Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016477

Physical Location & Seq

Genomic Coordinates Reverse (-)

74434995 .. 74437520

Gene Structure 2526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG517500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCGACTCGGACAACGACTCCGGCGGCCACAACGGCCACTCGCAGGGAGGGGAGCTGTCGGCGCGTGAGCAGGACCGGTTCCTGCCGATCGCGAACGTGAGCCGCATCATGAAGAAGGCATTGCCGGCCAACGCCAAGATCTCCAAGGACGCGAAGGAGACCGTCCAGGAGTGCGTCTCCGAGTTCATCAGCTTTGTCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACCTTGGGATTCGAGGAGTACGTCGAGCCGCTCAAGATCTATCTCCAGAAGTACCGCGAGATGGAAGGAGAGAAAGGCGCCGTCGGAACCGCCGGAAGAGACAAGGAAGGCGGCTCCGGAGGCGGAGGATCGGCTGCTGGAGGCGGCGGCGGAAGCGGAGGCGGATTGAGCTCCGGGACGAGCGGCGGCGGCGGAGGAGGCGCGTTTAATGGGGTTTATGGTGGGATGGGGATGTTGGGTCATCATCAGGGACACGTGTACGGCTCAGGTGGGTATCAACATCAAATGGGGATAGGGGAGAAGCGCGGTGGTTCCGGCGGTGGAGCTTCAGTGAGGTCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

207

Amino Acids

21.11

Weight (kDa)

6.6

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	28 - 92	1.5e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14540
fragaria_vesca	FvH4_6g40600
malus_domestica	MD09G1126900.v1.1
prunus_persica	Prupe.3G197300_v2.0.a1
pyrus_communis	pycom09g05110
rosa_chinensis	RchiOBHm_Chr2g0155961
rosa_laevigata	RLG00000020878
rosa_multiflora	Rmu_sc0000260.1_g000028
rosa_rugosa	Rorug02G0450900
rosa_samantha	Rh2AG517500 Rh2BG528800 Rh2CG502200 Rh2DG537900
rosa_wichuraiana	Rw2G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	356
AccBSI	CCGCTC	2 cut(s)	310, 462
AccII	CGCG	7 cut(s)	67, 95, 155, 231, 336, 482, 585
AccIII	TCCGGA	1 cut(s)	395
AclWI	GGATC	1 cut(s)	415
AcoI	YGGCCR	4 cut(s)	3, 28, 37, 129
AcuI	CTGAAG	1 cut(s)	591
AcvI	CACGTG	1 cut(s)	535
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	3 cut(s)	299, 332, 539
AfiI	CCNNNNNNNGG	2 cut(s)	46, 340
AflIII	ACRYGT	2 cut(s)	532, 534
AgeI	ACCGGT	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	4 cut(s)	58, 195, 450, 605
AluI	AGCT	4 cut(s)	58, 195, 450, 605
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	3 cut(s)	155, 184, 372
AlwI	GGATC	1 cut(s)	415
Aor13HI	TCCGGA	1 cut(s)	395
AoxI	GGCC	6 cut(s)	3, 28, 37, 129, 210, 270
ApeKI	GCWGC	1 cut(s)	413
AsiGI	ACCGGT	1 cut(s)	78
AspLEI	GCGC	6 cut(s)	67, 231, 240, 359, 482, 585
AspS9I	GGNCC	2 cut(s)	76, 270
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	452
BbrPI	CACGTG	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	2 cut(s)	334, 499
BceAI	ACGGC	4 cut(s)	52, 268, 344, 556
BciT130I	CCWGG	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	155, 184, 372
BfoI	RGCGCY	1 cut(s)	360
BglI	GCCNNNNNGGC	1 cut(s)	36
BglII	AGATCT	2 cut(s)	141, 315
Bme1390I	CCNGG	2 cut(s)	170, 454
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 270
BmiI	GGNNCC	5 cut(s)	83, 358, 367, 394, 592
BmrFI	CCNGG	2 cut(s)	170, 454
BmsI	GCATC	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	2 cut(s)	308, 438
Bpu10I	CCTNAGC	1 cut(s)	544
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	454
BsaAI	YACGTR	1 cut(s)	535
BsaHI	GRCGYC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	147, 282
BsaWI	WCCGGW	2 cut(s)	78, 395
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 594, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 340
Bse118I	RCCGGY	3 cut(s)	78, 127, 203
Bse3DI	GCAATG	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	147, 282
BseGI	GGATG	2 cut(s)	510, 516
BseLI	CCNNNNNNNGG	2 cut(s)	46, 340
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	558
BseRI	GAGGAG	2 cut(s)	308, 489
BseXI	GCAGC	1 cut(s)	400
Bsh1236I	CGCG	7 cut(s)	67, 95, 155, 231, 336, 482, 585
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	6 cut(s)	5, 30, 39, 131, 212, 272
BshNI	GGYRCC	1 cut(s)	356
BshTI	ACCGGT	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	452
BsiSI	CCGG	8 cut(s)	24, 79, 128, 204, 372, 396, 453, 594
BslFI	GGGAC	2 cut(s)	469, 543
BslI	CCNNNNNNNGG	2 cut(s)	46, 340
BsmAI	GTCTC	3 cut(s)	155, 184, 372
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	2 cut(s)	469, 543
BsnI	GGCC	6 cut(s)	5, 30, 39, 131, 212, 272
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	5 cut(s)	90, 141, 246, 315, 407
Bsp68I	TCGCGA	1 cut(s)	95
BspANI	GGCC	6 cut(s)	5, 30, 39, 131, 212, 272
BspCNI	CTCAG	1 cut(s)	557
BspEI	TCCGGA	1 cut(s)	395
BspFNI	CGCG	7 cut(s)	67, 95, 155, 231, 336, 482, 585
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	5 cut(s)	83, 358, 367, 394, 592
BspPI	GGATC	1 cut(s)	415
BspT107I	GGYRCC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	155
BsrBI	CCGCTC	2 cut(s)	310, 462
BsrDI	GCAATG	1 cut(s)	122
BsrFI	RCCGGY	3 cut(s)	78, 127, 203
BssAI	RCCGGY	3 cut(s)	78, 127, 203
BssECI	CCNNGG	2 cut(s)	147, 282
BssMI	GATC	5 cut(s)	90, 141, 246, 315, 407
BssNI	GRCGYC	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	147, 282
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	370
BstACI	GRCGYC	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	129, 227
BstDEI	CTNAG	1 cut(s)	544
BstF5I	GGATG	2 cut(s)	510, 516
BstFNI	CGCG	7 cut(s)	67, 95, 155, 231, 336, 482, 585
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	6 cut(s)	67, 231, 240, 359, 482, 585
BstKTI	GATC	5 cut(s)	93, 144, 249, 318, 410
BstMAI	GTCTC	3 cut(s)	155, 184, 372
BstMBI	GATC	5 cut(s)	90, 141, 246, 315, 407
BstMCI	CGRYCG	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	168, 452
BstUI	CGCG	7 cut(s)	67, 95, 155, 231, 336, 482, 585
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	2 cut(s)	141, 315
BstYI	RGATCY	2 cut(s)	141, 315
BsuRI	GGCC	6 cut(s)	5, 30, 39, 131, 212, 272
BtsCI	GGATG	2 cut(s)	510, 516
BtsIMutI	CAGTG	1 cut(s)	615
BtuMI	TCGCGA	1 cut(s)	95
Cac8I	GCNNGC	2 cut(s)	129, 227
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	6 cut(s)	67, 231, 240, 359, 482, 585
Cfr10I	RCCGGY	3 cut(s)	78, 127, 203
Cfr13I	GGNCC	2 cut(s)	76, 270
CseI	GACGC	2 cut(s)	161, 166
Csp6I	GTAC	3 cut(s)	298, 331, 538
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	2 cut(s)	112, 274
CviQI	GTAC	3 cut(s)	298, 331, 538
DdeI	CTNAG	1 cut(s)	544
DinI	GGCGCC	1 cut(s)	358
DpnI	GATC	5 cut(s)	92, 143, 248, 317, 409
DpnII	GATC	5 cut(s)	90, 141, 246, 315, 407
EaeI	YGGCCR	4 cut(s)	3, 28, 37, 129
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
EciI	GGCGGA	4 cut(s)	417, 444, 456, 486
Ecl136II	GAGCTC	1 cut(s)	450
Eco130I	CCWWGG	2 cut(s)	147, 282
Eco147I	AGGCCT	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	591
Eco72I	CACGTG	1 cut(s)	535
EcoICRI	GAGCTC	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	2 cut(s)	147, 282
EcoT38I	GRGCYC	1 cut(s)	452
EgeI	GGCGCC	1 cut(s)	358
EheI	GGCGCC	1 cut(s)	358
ErhI	CCWWGG	2 cut(s)	147, 282
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	2 cut(s)	115, 277
FaiI	YATR	3 cut(s)	113, 275, 498
FaqI	GGGAC	2 cut(s)	469, 543
FatI	CATG	2 cut(s)	111, 273
FokI	GGATG	2 cut(s)	517, 523
FriOI	GRGCYC	1 cut(s)	452
GlaI	GCGC	6 cut(s)	66, 230, 239, 358, 481, 584
GsuI	CTGGAG	2 cut(s)	308, 438
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	6 cut(s)	5, 30, 39, 131, 212, 272
HapII	CCGG	8 cut(s)	24, 79, 128, 204, 372, 396, 453, 594
HgaI	GACGC	2 cut(s)	161, 166
HhaI	GCGC	6 cut(s)	67, 231, 240, 359, 482, 585
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	115, 277
Hin6I	GCGC	6 cut(s)	65, 229, 238, 357, 480, 583
HinP1I	GCGC	6 cut(s)	65, 229, 238, 357, 480, 583
HinfI	GANTC	3 cut(s)	8, 20, 288
HpaII	CCGG	8 cut(s)	24, 79, 128, 204, 372, 396, 453, 594
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	4 cut(s)	13, 184, 217, 365
Hpy188III	TCNNGA	5 cut(s)	94, 112, 313, 325, 396
Hpy8I	GTNNAC	1 cut(s)	538
Hpy99I	CGWCG	3 cut(s)	260, 305, 365
HpyAV	CCTTC	4 cut(s)	112, 151, 338, 380
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	3 cut(s)	99, 300, 534
HpyF3I	CTNAG	1 cut(s)	544
HpySE526I	ACGT	3 cut(s)	99, 300, 534
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	115, 277
HspAI	GCGC	6 cut(s)	65, 229, 238, 357, 480, 583
KasI	GGCGCC	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	395
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	5 cut(s)	90, 141, 246, 315, 407
LmnI	GCTCC	4 cut(s)	55, 398, 455, 602
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	1 cut(s)	117
MaeII	ACGT	3 cut(s)	99, 300, 534
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	5 cut(s)	92, 143, 248, 317, 409
MbiI	CCGCTC	2 cut(s)	310, 462
MboI	GATC	5 cut(s)	90, 141, 246, 315, 407
MboII	GAAGA	2 cut(s)	127, 387
MflI	RGATCY	2 cut(s)	141, 315
MhlI	GDGCHC	1 cut(s)	452
Mly113I	GGCGCC	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	2, 14
MmeI	TCCRAC	2 cut(s)	240, 343
MroI	TCCGGA	1 cut(s)	395
MroNI	GCCGGC	1 cut(s)	127
MseI	TTAA	1 cut(s)	486
MspI	CCGG	8 cut(s)	24, 79, 128, 204, 372, 396, 453, 594
MspR9I	CCNGG	2 cut(s)	170, 454
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	7 cut(s)	67, 95, 155, 231, 336, 482, 585
NaeI	GCCGGC	1 cut(s)	129
NarI	GGCGCC	1 cut(s)	357
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	5 cut(s)	90, 141, 246, 315, 407
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	115, 277
NlaIV	GGNNCC	5 cut(s)	83, 358, 367, 394, 592
NmuCI	GTSAC	1 cut(s)	199
NruI	TCGCGA	1 cut(s)	95
PagI	TCATGA	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdiI	GCCGGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	288
PfoI	TCCNGGA	2 cut(s)	168, 452
PinAI	ACCGGT	1 cut(s)	78
Ple19I	CGATCG	1 cut(s)	93
PleI	GAGTC	2 cut(s)	2, 14
PluTI	GGCGCC	1 cut(s)	360
PmaCI	CACGTG	1 cut(s)	535
PmlI	CACGTG	1 cut(s)	535
PpsI	GAGTC	2 cut(s)	2, 14
Ppu21I	YACGTR	1 cut(s)	535
Psp124BI	GAGCTC	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	168
PspCI	CACGTG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	5 cut(s)	83, 358, 367, 394, 592
PspPI	GGNCC	2 cut(s)	76, 270
PsuI	RGATCY	2 cut(s)	141, 315
PvuI	CGATCG	1 cut(s)	93
RruI	TCGCGA	1 cut(s)	95
RsaI	GTAC	3 cut(s)	299, 332, 539
RsaNI	GTAC	3 cut(s)	298, 331, 538
SacI	GAGCTC	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	486
Sau3AI	GATC	5 cut(s)	90, 141, 246, 315, 407
Sau96I	GGNCC	2 cut(s)	76, 270
SchI	GAGTC	2 cut(s)	2, 14
ScrFI	CCNGG	2 cut(s)	170, 454
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	1 cut(s)	117
SfiI	GGCCNNNNNGGCC	1 cut(s)	36
SfoI	GGCGCC	1 cut(s)	358
SgrAI	CRCCGGYG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SseBI	AGGCCT	1 cut(s)	212
SspDI	GGCGCC	1 cut(s)	356
SstI	GAGCTC	1 cut(s)	452
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	168, 452
StyI	CCWWGG	2 cut(s)	147, 282
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	3 cut(s)	102, 303, 537
TaqI	TCGA	2 cut(s)	291, 303
TauI	GCSGC	9 cut(s)	30, 108, 310, 393, 426, 429, 465, 468, 471
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	128, 178
TspRI	CASTG	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.