Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0016477

Physical Location & Seq

Genomic Coordinates Forward (+)

9795758 .. 9796411

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1126900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCCGATTCGGACAACGACTCCGGAGGTCCCAACGACAGAAGCCAAGCTCAGAGCGGAGAGCTGTCGGCGCGTGAGCAGGACCGCTTCCTTCCGATCGCGAACGTGAGCCGGATCATGAAGAAGGCGCTGCCGGCGAACGCGAAGATATCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCGTCACCGGAGAGGCCTCCGACAAGTGCCAGAGGGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTATGGGCGATGACGACGTTGGGGTTCGAGGAGTACGTGGAGCCGCTCAAGATTTATTTGCAAAAGTATCGGGAGATGGAGGGCGAGAAGAGCACTATGGGCGGCGGCGGCGGTGGCAGAGAGAAAGATAGTAGCAGCGGAGGCGGCGGTGCGGCCTCTGGTGGTGGCGGAGGCGGCGGTATCAGCTCTGGGATAAGTGGTGGTGGGTATAACGGGGGGTATGGTGGAATGGTGATGATGGGTCATCATAACCATCATCAGGGACACGTGAGGGGTTCTGGTGGAGGGTATCAGCAGAACCATATGGCTATGGGAGGTGGAGGGGGTAGGAAGAGTGGTGGTTCAAGTGGTGGTGGTAACGGTGGAGCTTCAGTCGTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

218

Amino Acids

22.18

Weight (kDa)

7.02

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	30 - 94	1.6e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14540
fragaria_vesca	FvH4_6g40600
malus_domestica	MD09G1126900.v1.1
prunus_persica	Prupe.3G197300_v2.0.a1
pyrus_communis	pycom09g05110
rosa_chinensis	RchiOBHm_Chr2g0155961
rosa_laevigata	RLG00000020878
rosa_multiflora	Rmu_sc0000260.1_g000028
rosa_rugosa	Rorug02G0450900
rosa_samantha	Rh2AG517500 Rh2BG528800 Rh2CG502200 Rh2DG537900
rosa_wichuraiana	Rw2G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	57, 316
AccII	CGCG	4 cut(s)	73, 101, 143, 161
AccIII	TCCGGA	1 cut(s)	23
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	624
AcvI	CACGTG	1 cut(s)	538
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	529
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	1 cut(s)	615
AluBI	AGCT	5 cut(s)	50, 64, 201, 456, 638
AluI	AGCT	5 cut(s)	50, 64, 201, 456, 638
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	122
Aor13HI	TCCGGA	1 cut(s)	23
AoxI	GGCC	3 cut(s)	3, 216, 423
ApeKI	GCWGC	2 cut(s)	130, 405
AspLEI	GCGC	2 cut(s)	73, 130
AspS9I	GGNCC	2 cut(s)	29, 82
AsuHPI	GGTGA	2 cut(s)	199, 514
AvaII	GGWCC	2 cut(s)	29, 82
BbrPI	CACGTG	1 cut(s)	538
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	2 cut(s)	117, 417
BccI	CCATC	3 cut(s)	340, 502, 531
BceAI	ACGGC	1 cut(s)	274
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BcoDI	GTCTC	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	9 cut(s)	131, 314, 373, 376, 379, 406, 415, 423, 445
BlsI	GCNGC	9 cut(s)	132, 315, 374, 377, 380, 407, 416, 424, 446
Bme18I	GGWCC	2 cut(s)	29, 82
BmgT120I	GGNCC	2 cut(s)	29, 82
BmiI	GGNNCC	2 cut(s)	31, 312
BpiI	GAAGAC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	302
BsaAI	YACGTR	2 cut(s)	307, 538
BsaWI	WCCGGW	2 cut(s)	23, 209
BsaXI	ACNNNNNCTCC	5 cut(s)	5, 35, 170, 200, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse118I	RCCGGY	1 cut(s)	133
BseAI	TCCGGA	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	117, 417
BsgI	GTGCAG	1 cut(s)	194
Bsh1236I	CGCG	4 cut(s)	73, 101, 143, 161
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	5, 218, 425
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	4 cut(s)	24, 112, 134, 210
BslFI	GGGAC	2 cut(s)	15, 546
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	15, 546
BsnI	GGCC	3 cut(s)	5, 218, 425
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp13I	TCCGGA	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	96, 114, 252
Bsp68I	TCGCGA	1 cut(s)	101
BspANI	GGCC	3 cut(s)	5, 218, 425
BspCNI	CTCAG	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	23
BspFNI	CGCG	4 cut(s)	73, 101, 143, 161
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	31, 312
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	353
BsrBI	CCGCTC	2 cut(s)	57, 316
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssMI	GATC	3 cut(s)	96, 114, 252
Bst4CI	ACNGT	2 cut(s)	172, 632
Bst6I	CTCTTC	3 cut(s)	236, 353, 596
BstBAI	YACGTR	2 cut(s)	307, 538
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	51
BstFNI	CGCG	4 cut(s)	73, 101, 143, 161
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	73, 130
BstKTI	GATC	3 cut(s)	99, 117, 255
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	3 cut(s)	96, 114, 252
BstMCI	CGRYCG	1 cut(s)	99
BstUI	CGCG	4 cut(s)	73, 101, 143, 161
BstV1I	GCAGC	2 cut(s)	117, 417
BstV2I	GAAGAC	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	5, 218, 425
BtgZI	GCGATG	1 cut(s)	293
BtuMI	TCGCGA	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	2 cut(s)	73, 130
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	29, 82
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	1 cut(s)	118
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	3 cut(s)	98, 116, 254
DpnII	GATC	3 cut(s)	96, 114, 252
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	236, 353, 596
EarI	CTCTTC	3 cut(s)	236, 353, 596
EciI	GGCGGA	1 cut(s)	453
Eco147I	AGGCCT	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	29, 82
Eco57I	CTGAAG	1 cut(s)	624
Eco72I	CACGTG	1 cut(s)	538
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	1 cut(s)	121
FaiI	YATR	9 cut(s)	119, 274, 368, 480, 492, 519, 573, 575, 581
FaqI	GGGAC	2 cut(s)	15, 546
FatI	CATG	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	573
Fnu4HI	GCNGC	9 cut(s)	131, 314, 373, 376, 379, 406, 415, 423, 445
Fsp4HI	GCNGC	9 cut(s)	131, 314, 373, 376, 379, 406, 415, 423, 445
GlaI	GCGC	2 cut(s)	72, 129
GluI	GCNGC	9 cut(s)	131, 314, 373, 376, 379, 406, 415, 423, 445
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	3 cut(s)	5, 218, 425
HapII	CCGG	4 cut(s)	24, 112, 134, 210
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	2 cut(s)	73, 130
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	2 cut(s)	71, 128
HinP1I	GCGC	2 cut(s)	71, 128
HinfI	GANTC	2 cut(s)	8, 20
HpaII	CCGG	4 cut(s)	24, 112, 134, 210
HphI	GGTGA	2 cut(s)	199, 514
Hpy188I	TCNGA	5 cut(s)	13, 54, 96, 190, 223
Hpy188III	TCNNGA	6 cut(s)	24, 100, 118, 319, 341, 646
Hpy99I	CGWCG	2 cut(s)	266, 289
HpyAV	CCTTC	4 cut(s)	101, 118, 148, 157
HpyCH4III	ACNGT	2 cut(s)	172, 632
HpyCH4IV	ACGT	4 cut(s)	105, 287, 306, 537
HpyCH4V	TGCA	2 cut(s)	175, 331
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	4 cut(s)	105, 287, 306, 537
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	2 cut(s)	71, 128
Kpn2I	TCCGGA	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	96, 114, 252
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	2 cut(s)	310, 635
Lsp1109I	GCAGC	2 cut(s)	117, 417
MaeII	ACGT	4 cut(s)	105, 287, 306, 537
MaeIII	GTNAC	2 cut(s)	205, 626
MalI	GATC	3 cut(s)	98, 116, 254
MbiI	CCGCTC	2 cut(s)	57, 316
MboI	GATC	3 cut(s)	96, 114, 252
MboII	GAAGA	6 cut(s)	133, 157, 253, 259, 370, 613
MhlI	GDGCHC	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	168, 246
MroI	TCCGGA	1 cut(s)	23
MroNI	GCCGGC	1 cut(s)	133
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	4 cut(s)	24, 112, 134, 210
MvnI	CGCG	4 cut(s)	73, 101, 143, 161
NaeI	GCCGGC	1 cut(s)	135
NdeI	CATATG	1 cut(s)	573
NdeII	GATC	3 cut(s)	96, 114, 252
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	2 cut(s)	31, 312
NmuCI	GTSAC	1 cut(s)	205
NruI	TCGCGA	1 cut(s)	101
PagI	TCATGA	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 303
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	9 cut(s)	132, 315, 374, 377, 380, 407, 416, 424, 446
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	1 cut(s)	14
PmaCI	CACGTG	1 cut(s)	538
PmlI	CACGTG	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	14
Ppu21I	YACGTR	2 cut(s)	307, 538
PpuMI	RGGWCCY	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	29
PspCI	CACGTG	1 cut(s)	538
PspN4I	GGNNCC	2 cut(s)	31, 312
PspPI	GGNCC	2 cut(s)	29, 82
PspPPI	RGGWCCY	1 cut(s)	29
PvuI	CGATCG	1 cut(s)	99
RruI	TCGCGA	1 cut(s)	101
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SapI	GCTCTTC	1 cut(s)	353
SatI	GCNGC	9 cut(s)	131, 314, 373, 376, 379, 406, 415, 423, 445
Sau3AI	GATC	3 cut(s)	96, 114, 252
Sau96I	GGNCC	2 cut(s)	29, 82
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	365
SinI	GGWCC	2 cut(s)	29, 82
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SseBI	AGGCCT	1 cut(s)	218
StuI	AGGCCT	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	172, 632
TaiI	ACGT	4 cut(s)	108, 290, 309, 540
TaqI	TCGA	2 cut(s)	152, 297
TauI	GCSGC	7 cut(s)	316, 375, 378, 381, 417, 425, 447
TfiI	GAWTC	1 cut(s)	8
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	130, 405
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	134, 184
VpaK11BI	GGWCC	2 cut(s)	29, 82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.