Rmu_sc0000260.1_g000028

Nuclear transcription factor Y subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000260.1
Physical Location & Seq
Forward (+)
119112 .. 121988
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000260.1_g000028.1.cds

Sequence Viewer

Length: 912 bp
atgttgcagcttatccatattggcagattgcttccttctccatccctcctggtaatcctcaagggtggaagagtacacatctccgacccgagaacccgtccgacatcccagtacccgccaggtgtaccacacttatcgttaaacgaacggatccagcttcgccacgtgtcgcggcgcagcataattaccccgcggatccaacggaccccaacaactcttctccaaaagtctcgaacttcaacgcaacgcagcgcagccgctcctccagagaccccggaaaaagaatctccgatggccgactcggacaacgactccggcggccacaacggccactcgcagggaggggagctgtcggcgcgtgagcaggaccggttcctgccgatcgcgaacgtgagccgcatcatgaagaaggcattaccggccaacgccaagatctccaaggacgcgaaggagaccgtccaggagtgcgtctccgagttcatcagcttcgtcaccggcgaggcatccgacaagtgccagcgcgagaagcgcaagacgatcaacggcgacgatttgctctgggccatgaccaccttgggattcgaggagtacgtcgagccgctcaagatctatctccagaagtaccgcgagatggaaggagagaaaggcgccgtcggaaccgccggaagagacaaggaaggcggctccggaggcggaggatcggctgctggaggcggcggcggaagcggaggcggattgagctccgggacgagcggcggcggcggcggcgcgtttaatggggtttatggtgggatggggatgttgggtcatcatcagggacacgtgtacggctcaggtgggtatcaacatcaaatggggataggggagaagcgcggtggttccggcggtggagcttcagtgaggtcaaggtag

Protein Analysis

303

Amino Acids

31.9

Weight (kDa)

9.58

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14540
fragaria_vesca FvH4_6g40600
malus_domestica MD09G1126900.v1.1
prunus_persica Prupe.3G197300_v2.0.a1
pyrus_communis pycom09g05110
rosa_chinensis RchiOBHm_Chr2g0155961
rosa_laevigata RLG00000020878
rosa_multiflora Rmu_sc0000260.1_g000028
rosa_rugosa Rorug02G0450900
rosa_samantha Rh2AG517500 Rh2BG528800 Rh2CG502200 Rh2DG537900
rosa_wichuraiana Rw2G042610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 647
AccBSI CCGCTC 3 cut(s) 260, 601, 753
AccII CGCG 9 cut(s) 172, 193, 358, 386, 446, 522, 627, 770, 873
AccIII TCCGGA 1 cut(s) 686
AclWI GGATC 5 cut(s) 145, 158, 190, 203, 706
AcoI YGGCCR 4 cut(s) 294, 319, 328, 420
AcuI CTGAAG 1 cut(s) 879
AcvI CACGTG 2 cut(s) 166, 823
AcyI GRCGYC 1 cut(s) 648
AfaI GTAC 6 cut(s) 75, 113, 126, 590, 623, 827
AfiI CCNNNNNNNGG 2 cut(s) 337, 631
AflIII ACRYGT 3 cut(s) 165, 820, 822
AgeI ACCGGT 1 cut(s) 369
AgsI TTSAA 1 cut(s) 240
AjnI CCWGG 3 cut(s) 48, 118, 459
AluBI AGCT 6 cut(s) 10, 157, 349, 486, 741, 893
AluI AGCT 6 cut(s) 10, 157, 349, 486, 741, 893
Alw21I GWGCWC 1 cut(s) 743
Alw26I GTCTC 5 cut(s) 234, 263, 446, 475, 663
AlwI GGATC 5 cut(s) 145, 158, 190, 203, 706
Ama87I CYCGRG 1 cut(s) 88
Aor13HI TCCGGA 1 cut(s) 686
AoxI GGCC 5 cut(s) 294, 319, 328, 420, 561
ApeKI GCWGC 5 cut(s) 7, 177, 249, 254, 704
AsiGI ACCGGT 1 cut(s) 369
AspLEI GCGC 8 cut(s) 177, 254, 358, 522, 531, 650, 770, 873
AspS9I GGNCC 3 cut(s) 204, 367, 561
AsuC2I CCSGG 2 cut(s) 275, 745
AsuHPI GGTGA 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 88
AvaII GGWCC 2 cut(s) 204, 367
BamHI GGATCC 2 cut(s) 150, 195
BanI GGYRCC 1 cut(s) 647
BanII GRGCYC 1 cut(s) 743
BbrPI CACGTG 2 cut(s) 166, 823
Bbv12I GWGCWC 1 cut(s) 743
BbvI GCAGC 5 cut(s) 19, 189, 261, 266, 691
BccI CCATC 4 cut(s) 49, 286, 625, 787
BceAI ACGGC 4 cut(s) 343, 559, 635, 844
BciT130I CCWGG 3 cut(s) 50, 120, 461
BcnI CCSGG 2 cut(s) 275, 745
BcoDI GTCTC 5 cut(s) 234, 263, 446, 475, 663
BfoI RGCGCY 1 cut(s) 651
BglI GCCNNNNNGGC 1 cut(s) 327
BglII AGATCT 2 cut(s) 432, 606
Bme1390I CCNGG 5 cut(s) 50, 120, 275, 461, 745
Bme18I GGWCC 2 cut(s) 204, 367
BmeT110I CYCGRG 1 cut(s) 88
BmgT120I GGNCC 3 cut(s) 204, 367, 561
BmiI GGNNCC 8 cut(s) 152, 197, 206, 374, 649, 658, 685, 880
BmrFI CCNGG 5 cut(s) 50, 120, 275, 461, 745
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 2 cut(s) 408, 512
BmuI ACTGGG 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BpmI CTGGAG 3 cut(s) 249, 599, 729
Bpu10I CCTNAGC 1 cut(s) 832
BpuEI CTTGAG 2 cut(s) 44, 587
BpuMI CCSGG 2 cut(s) 275, 745
BsaAI YACGTR 2 cut(s) 166, 823
BsaHI GRCGYC 1 cut(s) 648
BsaI GGTCTC 2 cut(s) 263, 446
BsaJI CCNNGG 4 cut(s) 191, 273, 438, 573
BsaWI WCCGGW 2 cut(s) 369, 686
BsaXI ACNNNNNCTCC 4 cut(s) 296, 326, 882, 912
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 631
Bse118I RCCGGY 3 cut(s) 369, 418, 494
Bse1I ACTGG 1 cut(s) 109
BseAI TCCGGA 1 cut(s) 686
BseBI CCWGG 3 cut(s) 50, 120, 461
BseDI CCNNGG 4 cut(s) 191, 273, 438, 573
BseGI GGATG 5 cut(s) 41, 104, 503, 798, 804
BseLI CCNNNNNNNGG 2 cut(s) 337, 631
BseMII CTCAG 1 cut(s) 846
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 2 cut(s) 252, 599
BseXI GCAGC 5 cut(s) 19, 189, 261, 266, 691
Bsh1236I CGCG 9 cut(s) 172, 193, 358, 386, 446, 522, 627, 770, 873
Bsh1285I CGRYCG 1 cut(s) 384
BshFI GGCC 5 cut(s) 296, 321, 330, 422, 563
BshNI GGYRCC 1 cut(s) 647
BshTI ACCGGT 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 743
BsiHKCI CYCGRG 1 cut(s) 88
BsiSI CCGG 9 cut(s) 275, 315, 370, 419, 495, 663, 687, 744, 882
BslFI GGGAC 2 cut(s) 760, 831
BslI CCNNNNNNNGG 2 cut(s) 337, 631
BsmAI GTCTC 5 cut(s) 234, 263, 446, 475, 663
BsmBI CGTCTC 1 cut(s) 475
BsmFI GGGAC 2 cut(s) 760, 831
BsnI GGCC 5 cut(s) 296, 321, 330, 422, 563
Bso31I GGTCTC 2 cut(s) 263, 446
BsoBI CYCGRG 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 743
Bsp13I TCCGGA 1 cut(s) 686
Bsp143I GATC 7 cut(s) 150, 195, 381, 432, 537, 606, 698
Bsp68I TCGCGA 1 cut(s) 386
BspANI GGCC 5 cut(s) 296, 321, 330, 422, 563
BspCNI CTCAG 1 cut(s) 845
BspEI TCCGGA 1 cut(s) 686
BspFNI CGCG 9 cut(s) 172, 193, 358, 386, 446, 522, 627, 770, 873
BspHI TCATGA 1 cut(s) 402
BspLI GGNNCC 8 cut(s) 152, 197, 206, 374, 649, 658, 685, 880
BspPI GGATC 5 cut(s) 145, 158, 190, 203, 706
BspT107I GGYRCC 1 cut(s) 647
BspTNI GGTCTC 2 cut(s) 263, 446
BsrBI CCGCTC 3 cut(s) 260, 601, 753
BsrFI RCCGGY 3 cut(s) 369, 418, 494
BsrI ACTGG 1 cut(s) 109
BssAI RCCGGY 3 cut(s) 369, 418, 494
BssECI CCNNGG 4 cut(s) 191, 273, 438, 573
BssMI GATC 7 cut(s) 150, 195, 381, 432, 537, 606, 698
BssNI GRCGYC 1 cut(s) 648
BssT1I CCWWGG 2 cut(s) 438, 573
Bst2UI CCWGG 3 cut(s) 50, 120, 461
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 3 cut(s) 64, 222, 661
BstACI GRCGYC 1 cut(s) 648
BstBAI YACGTR 2 cut(s) 166, 823
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 1 cut(s) 832
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 5 cut(s) 41, 104, 503, 798, 804
BstFNI CGCG 9 cut(s) 172, 193, 358, 386, 446, 522, 627, 770, 873
BstH2I RGCGCY 1 cut(s) 651
BstHHI GCGC 8 cut(s) 177, 254, 358, 522, 531, 650, 770, 873
BstKTI GATC 7 cut(s) 153, 198, 384, 435, 540, 609, 701
BstMAI GTCTC 5 cut(s) 234, 263, 446, 475, 663
BstMBI GATC 7 cut(s) 150, 195, 381, 432, 537, 606, 698
BstMCI CGRYCG 1 cut(s) 384
BstNI CCWGG 3 cut(s) 50, 120, 461
BstSCI CCNGG 5 cut(s) 48, 118, 273, 459, 743
BstUI CGCG 9 cut(s) 172, 193, 358, 386, 446, 522, 627, 770, 873
BstV1I GCAGC 5 cut(s) 19, 189, 261, 266, 691
BstX2I RGATCY 4 cut(s) 150, 195, 432, 606
BstYI RGATCY 4 cut(s) 150, 195, 432, 606
BsuRI GGCC 5 cut(s) 296, 321, 330, 422, 563
BtgI CCRYGG 1 cut(s) 191
BtsCI GGATG 5 cut(s) 41, 104, 503, 798, 804
BtsIMutI CAGTG 1 cut(s) 903
BtuMI TCGCGA 1 cut(s) 386
Cac8I GCNNGC 1 cut(s) 518
CciI TCATGA 1 cut(s) 402
CfoI GCGC 8 cut(s) 177, 254, 358, 522, 531, 650, 770, 873
Cfr10I RCCGGY 3 cut(s) 369, 418, 494
Cfr13I GGNCC 3 cut(s) 204, 367, 561
Cfr42I CCGCGG 1 cut(s) 194
CseI GACGC 2 cut(s) 452, 457
Csp6I GTAC 6 cut(s) 74, 112, 125, 589, 622, 826
CspAI ACCGGT 1 cut(s) 369
CviAII CATG 2 cut(s) 403, 565
CviQI GTAC 6 cut(s) 74, 112, 125, 589, 622, 826
DdeI CTNAG 1 cut(s) 832
DinI GGCGCC 1 cut(s) 649
DpnI GATC 7 cut(s) 152, 197, 383, 434, 539, 608, 700
DpnII GATC 7 cut(s) 150, 195, 381, 432, 537, 606, 698
EaeI YGGCCR 4 cut(s) 294, 319, 328, 420
Eam1104I CTCTTC 3 cut(s) 64, 222, 661
EarI CTCTTC 3 cut(s) 64, 222, 661
EciI GGCGGA 3 cut(s) 708, 735, 747
Ecl136II GAGCTC 1 cut(s) 741
Eco130I CCWWGG 2 cut(s) 438, 573
Eco24I GRGCYC 1 cut(s) 743
Eco31I GGTCTC 2 cut(s) 263, 446
Eco47I GGWCC 2 cut(s) 204, 367
Eco53kI GAGCTC 1 cut(s) 741
Eco57I CTGAAG 1 cut(s) 879
Eco72I CACGTG 2 cut(s) 166, 823
Eco88I CYCGRG 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 741
EcoRII CCWGG 3 cut(s) 48, 118, 459
EcoT14I CCWWGG 2 cut(s) 438, 573
EcoT38I GRGCYC 1 cut(s) 743
EgeI GGCGCC 1 cut(s) 649
EheI GGCGCC 1 cut(s) 649
ErhI CCWWGG 2 cut(s) 438, 573
Esp3I CGTCTC 1 cut(s) 475
FaeI CATG 2 cut(s) 406, 568
FaiI YATR 5 cut(s) 18, 182, 404, 566, 786
FaqI GGGAC 2 cut(s) 760, 831
FatI CATG 2 cut(s) 402, 564
FauI CCCGC 2 cut(s) 123, 198
FokI GGATG 5 cut(s) 28, 91, 490, 805, 811
FriOI GRGCYC 1 cut(s) 743
GlaI GCGC 8 cut(s) 176, 253, 357, 521, 530, 649, 769, 872
GsuI CTGGAG 3 cut(s) 249, 599, 729
HaeII RGCGCY 1 cut(s) 651
HaeIII GGCC 5 cut(s) 296, 321, 330, 422, 563
HapII CCGG 9 cut(s) 275, 315, 370, 419, 495, 663, 687, 744, 882
HgaI GACGC 2 cut(s) 452, 457
HhaI GCGC 8 cut(s) 177, 254, 358, 522, 531, 650, 770, 873
Hin1I GRCGYC 1 cut(s) 648
Hin1II CATG 2 cut(s) 406, 568
Hin6I GCGC 8 cut(s) 175, 252, 356, 520, 529, 648, 768, 871
HinP1I GCGC 8 cut(s) 175, 252, 356, 520, 529, 648, 768, 871
HinfI GANTC 4 cut(s) 284, 299, 311, 579
HpaII CCGG 9 cut(s) 275, 315, 370, 419, 495, 663, 687, 744, 882
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 3 cut(s) 76, 125, 826
Hpy188I TCNGA 7 cut(s) 85, 102, 291, 304, 475, 508, 656
Hpy188III TCNNGA 7 cut(s) 231, 266, 385, 403, 604, 616, 687
Hpy8I GTNNAC 3 cut(s) 76, 125, 826
Hpy99I CGWCG 3 cut(s) 551, 596, 656
HpyAV CCTTC 5 cut(s) 45, 403, 442, 629, 671
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 4 cut(s) 165, 390, 591, 822
HpyCH4V TGCA 1 cut(s) 7
HpyF3I CTNAG 1 cut(s) 832
HpySE526I ACGT 4 cut(s) 165, 390, 591, 822
Hsp92I GRCGYC 1 cut(s) 648
Hsp92II CATG 2 cut(s) 406, 568
HspAI GCGC 8 cut(s) 175, 252, 356, 520, 529, 648, 768, 871
KasI GGCGCC 1 cut(s) 647
Kpn2I TCCGGA 1 cut(s) 686
KspI CCGCGG 1 cut(s) 194
Kzo9I GATC 7 cut(s) 150, 195, 381, 432, 537, 606, 698
LmnI GCTCC 5 cut(s) 265, 346, 689, 746, 890
Lsp1109I GCAGC 5 cut(s) 19, 189, 261, 266, 691
LweI GCATC 2 cut(s) 408, 512
MaeII ACGT 4 cut(s) 165, 390, 591, 822
MaeIII GTNAC 1 cut(s) 490
MalI GATC 7 cut(s) 152, 197, 383, 434, 539, 608, 700
MbiI CCGCTC 3 cut(s) 260, 601, 753
MboI GATC 7 cut(s) 150, 195, 381, 432, 537, 606, 698
MboII GAAGA 4 cut(s) 81, 209, 418, 678
MflI RGATCY 4 cut(s) 150, 195, 432, 606
MhlI GDGCHC 1 cut(s) 743
MluCI AATT 1 cut(s) 183
Mly113I GGCGCC 1 cut(s) 648
MlyI GAGTC 2 cut(s) 293, 305
MmeI TCCRAC 5 cut(s) 108, 125, 223, 531, 634
MroI TCCGGA 1 cut(s) 686
MseI TTAA 2 cut(s) 140, 774
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 9 cut(s) 275, 315, 370, 419, 495, 663, 687, 744, 882
MspR9I CCNGG 5 cut(s) 50, 120, 275, 461, 745
MvaI CCWGG 3 cut(s) 50, 120, 461
MvnI CGCG 9 cut(s) 172, 193, 358, 386, 446, 522, 627, 770, 873
NarI GGCGCC 1 cut(s) 648
NciI CCSGG 2 cut(s) 275, 745
NdeII GATC 7 cut(s) 150, 195, 381, 432, 537, 606, 698
NlaIII CATG 2 cut(s) 406, 568
NlaIV GGNNCC 8 cut(s) 152, 197, 206, 374, 649, 658, 685, 880
NmuCI GTSAC 1 cut(s) 490
NruI TCGCGA 1 cut(s) 386
PagI TCATGA 1 cut(s) 402
PcsI WCGNNNNNNNCGW 2 cut(s) 495, 588
PfeI GAWTC 2 cut(s) 284, 579
PfoI TCCNGGA 2 cut(s) 459, 743
PinAI ACCGGT 1 cut(s) 369
Ple19I CGATCG 1 cut(s) 384
PleI GAGTC 2 cut(s) 293, 305
PluTI GGCGCC 1 cut(s) 651
PmaCI CACGTG 2 cut(s) 166, 823
PmlI CACGTG 2 cut(s) 166, 823
PpsI GAGTC 2 cut(s) 293, 305
Ppu21I YACGTR 2 cut(s) 166, 823
Psp124BI GAGCTC 1 cut(s) 743
Psp6I CCWGG 3 cut(s) 48, 118, 459
PspCI CACGTG 2 cut(s) 166, 823
PspGI CCWGG 3 cut(s) 48, 118, 459
PspN4I GGNNCC 8 cut(s) 152, 197, 206, 374, 649, 658, 685, 880
PspPI GGNCC 3 cut(s) 204, 367, 561
PsuI RGATCY 4 cut(s) 150, 195, 432, 606
PvuI CGATCG 1 cut(s) 384
RruI TCGCGA 1 cut(s) 386
RsaI GTAC 6 cut(s) 75, 113, 126, 590, 623, 827
RsaNI GTAC 6 cut(s) 74, 112, 125, 589, 622, 826
SacI GAGCTC 1 cut(s) 743
SacII CCGCGG 1 cut(s) 194
SaqAI TTAA 2 cut(s) 140, 774
Sau3AI GATC 7 cut(s) 150, 195, 381, 432, 537, 606, 698
Sau96I GGNCC 3 cut(s) 204, 367, 561
SchI GAGTC 2 cut(s) 293, 305
ScrFI CCNGG 5 cut(s) 50, 120, 275, 461, 745
SduI GDGCHC 1 cut(s) 743
SfaNI GCATC 2 cut(s) 408, 512
SfiI GGCCNNNNNGGCC 1 cut(s) 327
SfoI GGCGCC 1 cut(s) 649
Sfr303I CCGCGG 1 cut(s) 194
SgrAI CRCCGGYG 1 cut(s) 494
SgrBI CCGCGG 1 cut(s) 194
SinI GGWCC 2 cut(s) 204, 367
SmlI CTYRAG 2 cut(s) 59, 602
SmoI CTYRAG 2 cut(s) 59, 602
Sse9I AATT 1 cut(s) 183
SspDI GGCGCC 1 cut(s) 647
SstI GAGCTC 1 cut(s) 743
StyD4I CCNGG 5 cut(s) 48, 118, 273, 459, 743
StyI CCWWGG 2 cut(s) 438, 573
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 4 cut(s) 168, 393, 594, 825
TaqI TCGA 3 cut(s) 232, 582, 594
TasI AATT 1 cut(s) 183
TatI WGTACW 1 cut(s) 73
TfiI GAWTC 2 cut(s) 284, 579
Tru1I TTAA 2 cut(s) 140, 774
Tru9I TTAA 2 cut(s) 140, 774
TscAI CASTG 1 cut(s) 903
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 5 cut(s) 7, 177, 249, 254, 704
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 2 cut(s) 419, 469
TspGWI ACGGA 2 cut(s) 163, 217
TspRI CASTG 1 cut(s) 903
VpaK11BI GGWCC 2 cut(s) 204, 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.