FvH4_6g41300

N-acetyltransferase 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011423
Physical Location & Seq
Forward (+)
32508179 .. 32510579
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41300.t1

Sequence Viewer

Length: 603 bp
ATGATGAAAGAGAAGGAGAGTGTGAGCTTGGAAGGAAAGAAAGTGATACTAGTACCTTACATGAAAGAACACGTTCCCAAATACCATGAATGGATGCAAGACCCAGCTCTGCTTCAAGCCACCGGCTCTGAACCCCTCACTCTCGACCAGGAGTACCAGATGCAGCTCACCTGGACCCAAGACCCCAACAAGCAGACTTTCATTGTGTTAGATAAACAATTGATTGTGGGAGAGTTCAAACATGGAGAGGCTCATGAGGAAGCCATGGTAGGTGATGTGAATTTATATATGAATGACCTGGATGATCCCCAAATGGGAGAGGTCGAAATAATGATAGCTGAACCTAAAAGTCGTGGTAAAGGACATGGGAAGGAATCTGTCTTGCTGATGATGGCATTTGCAGTTGTGAATTTGGGAATTCACCTTTTCCGTGTTAAAATTGGAGAATCAAATGGCGGATCTCTTAGCTTGTTCCAGAAACTGGGATTTGAGGAGACTTCTCGTAGTGAAATCTTCAAAGAGGTAACATCGGAGCTACATGTAACAAAGGCCAAGCATGAGGAGCTACTGCATTTGATGGGTAGCTTGGTTACCCATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

201

Amino Acids

22.66

Weight (kDa)

5.35

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 15 - 164 5.4e-17 Acetyltransferase (GNAT) domain
Acetyltransf_8 PF13523 22 - 166 8.8e-07 Acetyltransferase (GNAT) domain
FR47 PF08445 102 - 167 9e-06 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04845 AT2G04845 AT2G04845 AT2G04845 AT2G04845
fragaria_vesca FvH4_6g41300 FvH4_6g41300
malus_domestica MD09G1120700.v1.1
prunus_persica Prupe.3G202800_v2.0.a1
pyrus_communis pycom09g04530 pycom17g10360
rosa_chinensis RchiOBHm_Chr2g0156861
rosa_laevigata RLG00000020947
rosa_multiflora Rmu_sc0009209.1_g000001 Rmu_ssc0000286.1_g000025
rosa_roxburghii Rroxscaffold_2G00092650
rosa_rugosa Rorug02G0456700
rosa_samantha Rh2AG522300 Rh2CG507200
rosa_wichuraiana Rw2G043130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 481
AciI CCGC 1 cut(s) 456
AclWI GGATC 2 cut(s) 299, 466
AcsI RAATTY 3 cut(s) 280, 409, 417
AfaI GTAC 2 cut(s) 54, 155
AfiI CCNNNNNNNGG 2 cut(s) 314, 481
AflIII ACRYGT 2 cut(s) 70, 538
AgsI TTSAA 3 cut(s) 116, 238, 517
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 3 cut(s) 147, 170, 297
AluBI AGCT 8 cut(s) 27, 107, 166, 338, 468, 535, 565, 585
AluI AGCT 8 cut(s) 27, 107, 166, 338, 468, 535, 565, 585
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 2 cut(s) 299, 466
AlwNI CAGNNNCTG 1 cut(s) 481
AoxI GGCC 1 cut(s) 549
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 3 cut(s) 280, 409, 417
Asp700I GAANNNNTTC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 3 cut(s) 160, 284, 413
AvaII GGWCC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 175
BccI CCATC 2 cut(s) 385, 571
BciT130I CCWGG 3 cut(s) 149, 172, 299
BcoDI GTCTC 1 cut(s) 488
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 1 cut(s) 50
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 3 cut(s) 149, 172, 299
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 3 cut(s) 149, 172, 299
BmrI ACTGGG 1 cut(s) 491
BmsI GCATC 2 cut(s) 84, 150
BmuI ACTGGG 1 cut(s) 491
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 481
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 486
BseBI CCWGG 3 cut(s) 149, 172, 299
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 99, 307
BseLI CCNNNNNNNGG 2 cut(s) 314, 481
BseNI ACTGG 1 cut(s) 486
BseRI GAGGAG 2 cut(s) 506, 575
BseXI GCAGC 1 cut(s) 175
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 551
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 2 cut(s) 314, 481
BsmAI GTCTC 1 cut(s) 488
BsnI GGCC 1 cut(s) 551
Bsp143I GATC 2 cut(s) 304, 458
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 1 cut(s) 456
BspANI GGCC 1 cut(s) 551
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 2 cut(s) 299, 466
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 486
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 2 cut(s) 304, 458
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 3 cut(s) 149, 172, 299
BstDEI CTNAG 1 cut(s) 464
BstDSI CCRYGG 1 cut(s) 264
BstEII GGTNACC 1 cut(s) 589
BstF5I GGATG 2 cut(s) 99, 307
BstKTI GATC 2 cut(s) 307, 461
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 2 cut(s) 304, 458
BstMWI GCNNNNNNNGC 1 cut(s) 562
BstNI CCWGG 3 cut(s) 149, 172, 299
BstNSI RCATGY 1 cut(s) 542
BstPI GGTNACC 1 cut(s) 589
BstSCI CCNGG 3 cut(s) 147, 170, 297
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BsuRI GGCC 1 cut(s) 551
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 2 cut(s) 99, 307
CaiI CAGNNNCTG 1 cut(s) 481
CciI TCATGA 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 2 cut(s) 53, 154
CviAII CATG 8 cut(s) 61, 86, 242, 254, 265, 365, 539, 557
CviQI GTAC 2 cut(s) 53, 154
DdeI CTNAG 1 cut(s) 464
DpnI GATC 2 cut(s) 306, 460
DpnII GATC 2 cut(s) 304, 458
EciI GGCGGA 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 174
Eco91I GGTNACC 1 cut(s) 589
EcoO65I GGTNACC 1 cut(s) 589
EcoRI GAATTC 1 cut(s) 417
EcoRII CCWGG 3 cut(s) 147, 170, 297
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 8 cut(s) 64, 89, 245, 257, 268, 368, 542, 560
FatI CATG 8 cut(s) 60, 85, 241, 253, 264, 364, 538, 556
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 2 cut(s) 106, 314
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 1 cut(s) 50
GluI GCNGC 1 cut(s) 164
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 551
HapII CCGG 1 cut(s) 123
Hin1II CATG 8 cut(s) 64, 89, 245, 257, 268, 368, 542, 560
HinfI GANTC 2 cut(s) 374, 446
HpaII CCGG 1 cut(s) 123
HphI GGTGA 3 cut(s) 160, 284, 413
Hpy188I TCNGA 2 cut(s) 130, 532
Hpy188III TCNNGA 3 cut(s) 143, 254, 475
HpyAV CCTTC 3 cut(s) 7, 26, 364
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 4 cut(s) 97, 163, 401, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 562
HpyF3I CTNAG 1 cut(s) 464
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 8 cut(s) 64, 89, 245, 257, 268, 368, 542, 560
Kzo9I GATC 2 cut(s) 304, 458
LmnI GCTCC 2 cut(s) 532, 562
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 2 cut(s) 84, 150
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 3 cut(s) 523, 541, 589
MalI GATC 2 cut(s) 306, 460
MboI GATC 2 cut(s) 304, 458
MboII GAAGA 1 cut(s) 505
MfeI CAATTG 1 cut(s) 218
MflI RGATCY 1 cut(s) 458
MluCI AATT 5 cut(s) 218, 280, 409, 417, 438
MnlI CCTC 7 cut(s) 146, 241, 250, 313, 484, 514, 553
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 1 cut(s) 435
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 3 cut(s) 149, 172, 299
MunI CAATTG 1 cut(s) 218
MvaI CCWGG 3 cut(s) 149, 172, 299
MwoI GCNNNNNNNGC 1 cut(s) 562
NcoI CCATGG 1 cut(s) 264
NdeII GATC 2 cut(s) 304, 458
NlaIII CATG 8 cut(s) 64, 89, 245, 257, 268, 368, 542, 560
NlaIV GGNNCC 1 cut(s) 176
NspI RCATGY 1 cut(s) 542
PagI TCATGA 1 cut(s) 253
PciI ACATGT 1 cut(s) 538
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 374, 446
PflMI CCANNNNNTGG 1 cut(s) 481
PkrI GCNGC 1 cut(s) 165
PscI ACATGT 1 cut(s) 538
Psp6I CCWGG 3 cut(s) 147, 170, 297
PspEI GGTNACC 1 cut(s) 589
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 3 cut(s) 147, 170, 297
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 481
PsuI RGATCY 1 cut(s) 458
RsaI GTAC 2 cut(s) 54, 155
RsaNI GTAC 2 cut(s) 53, 154
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 2 cut(s) 304, 458
Sau96I GGNCC 1 cut(s) 174
ScrFI CCNGG 3 cut(s) 149, 172, 299
SfaNI GCATC 2 cut(s) 84, 150
SinI GGWCC 1 cut(s) 174
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 5 cut(s) 218, 280, 409, 417, 438
SsiI CCGC 1 cut(s) 456
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 3 cut(s) 147, 170, 297
StyI CCWWGG 1 cut(s) 264
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 144, 324
TasI AATT 5 cut(s) 218, 280, 409, 417, 438
TfiI GAWTC 2 cut(s) 374, 446
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 5 cut(s) 20, 77, 102, 190, 305
TspGWI ACGGA 1 cut(s) 419
Van91I CCANNNNNTGG 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 174
XapI RAATTY 3 cut(s) 280, 409, 417
XceI RCATGY 1 cut(s) 542
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.