Rh2CG507200

N-acetyltransferase 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011423
Physical Location & Seq
Forward (+)
67907316 .. 67908758
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG507200.1

Sequence Viewer

Length: 624 bp
ATGGAGAAAGAGAAGGAGAGTGTGAGCTTGGAAGGAGGGAAAGTGATACTTGTCCCTTACATGAAACAACATGTTCCCAAATACCATGAGTGGATGCAAGACCCAGCTCTGCTTCAAGCCACCGGCTCTGAGCCCCTCACTCTCGACCAGGAATACCAGATGCAGCTCACCTGGACCCAAGACCCCAACAAGCAGACTTTCATTGTGTTAGATAAGCAATTGGTTGTGGGAGAGTTCAAACATGGAGAGGCCCATGTGGAAGCCATGGTAGGTGATGTGAATTTATATATGAATGACCTGGATGATCCCCAATTGGGAGAGGTTGAAATAATGATAGCTGAACCCAAAAGTCGTGGTAAAGGACATGGGAAGGAATCTGTCTTGATGATGATGGCATTTGCAGTTTTGAATTTGGGAATTCACATCTTCCGTGTTAAAATTGGAGAATCAAATGTTGCATCTCTTAGCTTGTTCCAGAAATTGGGATTTGAGGAGACTTCTCGTAGTGAAATCTTCAAAGAGGTGAGCCGAATTTTTTTCTTTACAAATGTGCACTGGCTTTTAGTTGGTCTGCAACTCTTTTGTTGTTTGGAGGGATGTCTGTGTGGACTTAGGAGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

207

Amino Acids

23.48

Weight (kDa)

5.26

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 15 - 164 6.2e-17 Acetyltransferase (GNAT) domain
Acetyltransf_8 PF13523 22 - 166 4.8e-07 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 55 - 163 2.9e-06 Acetyltransferase (GNAT) family
FR47 PF08445 103 - 167 4.4e-06 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04845 AT2G04845 AT2G04845 AT2G04845 AT2G04845
fragaria_vesca FvH4_6g41300 FvH4_6g41300
malus_domestica MD09G1120700.v1.1
prunus_persica Prupe.3G202800_v2.0.a1
pyrus_communis pycom09g04530 pycom17g10360
rosa_chinensis RchiOBHm_Chr2g0156861
rosa_laevigata RLG00000020947
rosa_multiflora Rmu_sc0009209.1_g000001 Rmu_ssc0000286.1_g000025
rosa_roxburghii Rroxscaffold_2G00092650
rosa_rugosa Rorug02G0456700
rosa_samantha Rh2AG522300 Rh2CG507200
rosa_wichuraiana Rw2G043130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 481
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 4 cut(s) 280, 409, 417, 531
AfiI CCNNNNNNNGG 2 cut(s) 314, 481
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 5 cut(s) 116, 238, 326, 409, 517
AjnI CCWGG 3 cut(s) 147, 170, 297
AluBI AGCT 6 cut(s) 27, 107, 166, 338, 468, 618
AluI AGCT 6 cut(s) 27, 107, 166, 338, 468, 618
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 1 cut(s) 488
Alw44I GTGCAC 1 cut(s) 551
AlwI GGATC 1 cut(s) 299
AoxI GGCC 1 cut(s) 249
ApaLI GTGCAC 1 cut(s) 551
ApeKI GCWGC 2 cut(s) 163, 618
ApoI RAATTY 4 cut(s) 280, 409, 417, 531
AspS9I GGNCC 2 cut(s) 174, 250
AsuHPI GGTGA 3 cut(s) 160, 284, 535
AvaII GGWCC 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 555
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 2 cut(s) 175, 605
BccI CCATC 1 cut(s) 385
BciT130I CCWGG 3 cut(s) 149, 172, 299
BcoDI GTCTC 1 cut(s) 488
BisI GCNGC 2 cut(s) 164, 619
BlsI GCNGC 2 cut(s) 165, 620
Bme1390I CCNGG 3 cut(s) 149, 172, 299
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 174, 250
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 3 cut(s) 149, 172, 299
BmsI GCATC 3 cut(s) 84, 150, 467
BsaJI CCNNGG 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 481
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 560
BseBI CCWGG 3 cut(s) 149, 172, 299
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 3 cut(s) 99, 307, 602
BseLI CCNNNNNNNGG 2 cut(s) 314, 481
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 560
BseRI GAGGAG 1 cut(s) 506
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 2 cut(s) 175, 605
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 314, 481
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 135, 555
Bsp143I GATC 1 cut(s) 304
Bsp19I CCATGG 1 cut(s) 264
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 560
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 3 cut(s) 149, 172, 299
BstDEI CTNAG 3 cut(s) 129, 464, 611
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 3 cut(s) 99, 307, 602
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 1 cut(s) 304
BstNI CCWGG 3 cut(s) 149, 172, 299
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 147, 170, 297
BstSLI GKGCMC 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 175, 605
BsuRI GGCC 1 cut(s) 251
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 3 cut(s) 99, 307, 602
BtsIMutI CAGTG 1 cut(s) 553
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 174, 250
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 7 cut(s) 61, 71, 86, 242, 254, 265, 365
DdeI CTNAG 3 cut(s) 129, 464, 611
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 417
EcoRII CCWGG 3 cut(s) 147, 170, 297
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 7 cut(s) 64, 74, 89, 245, 257, 268, 368
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 1 cut(s) 38
FatI CATG 7 cut(s) 60, 70, 85, 241, 253, 264, 364
Fnu4HI GCNGC 2 cut(s) 164, 619
FokI GGATG 3 cut(s) 106, 314, 609
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 164, 619
GluI GCNGC 2 cut(s) 164, 619
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 251
HapII CCGG 1 cut(s) 123
Hin1II CATG 7 cut(s) 64, 74, 89, 245, 257, 268, 368
HinfI GANTC 2 cut(s) 374, 446
HpaII CCGG 1 cut(s) 123
HphI GGTGA 3 cut(s) 160, 284, 535
Hpy166II GTNNAC 2 cut(s) 553, 608
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 143, 382, 475
Hpy8I GTNNAC 2 cut(s) 553, 608
HpyAV CCTTC 3 cut(s) 7, 26, 364
HpyCH4V TGCA 6 cut(s) 97, 163, 401, 458, 553, 574
HpyF3I CTNAG 3 cut(s) 129, 464, 611
Hsp92II CATG 7 cut(s) 64, 74, 89, 245, 257, 268, 368
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 1 cut(s) 615
Lsp1109I GCAGC 2 cut(s) 175, 605
LweI GCATC 3 cut(s) 84, 150, 467
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 2 cut(s) 418, 505
MfeI CAATTG 2 cut(s) 218, 311
MhlI GDGCHC 2 cut(s) 135, 555
MluCI AATT 8 cut(s) 218, 280, 311, 409, 417, 438, 479, 531
MnlI CCTC 7 cut(s) 29, 146, 241, 313, 484, 514, 586
MseI TTAA 1 cut(s) 435
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 3 cut(s) 149, 172, 299
MunI CAATTG 2 cut(s) 218, 311
MvaI CCWGG 3 cut(s) 149, 172, 299
NcoI CCATGG 1 cut(s) 264
NdeII GATC 1 cut(s) 304
NlaIII CATG 7 cut(s) 64, 74, 89, 245, 257, 268, 368
NlaIV GGNNCC 1 cut(s) 176
NspI RCATGY 1 cut(s) 74
PciI ACATGT 1 cut(s) 70
PfeI GAWTC 2 cut(s) 374, 446
PflMI CCANNNNNTGG 1 cut(s) 481
PkrI GCNGC 2 cut(s) 165, 620
PscI ACATGT 1 cut(s) 70
Psp6I CCWGG 3 cut(s) 147, 170, 297
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 3 cut(s) 147, 170, 297
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 2 cut(s) 174, 250
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 2 cut(s) 164, 619
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 2 cut(s) 174, 250
ScrFI CCNGG 3 cut(s) 149, 172, 299
SduI GDGCHC 2 cut(s) 135, 555
SfaNI GCATC 3 cut(s) 84, 150, 467
SinI GGWCC 1 cut(s) 174
Sse9I AATT 8 cut(s) 218, 280, 311, 409, 417, 438, 479, 531
StyD4I CCNGG 3 cut(s) 147, 170, 297
StyI CCWWGG 1 cut(s) 264
TaqI TCGA 1 cut(s) 144
TasI AATT 8 cut(s) 218, 280, 311, 409, 417, 438, 479, 531
TfiI GAWTC 2 cut(s) 374, 446
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 1 cut(s) 560
TseI GCWGC 2 cut(s) 163, 618
TspDTI ATGAA 3 cut(s) 77, 190, 305
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 560
Van91I CCANNNNNTGG 1 cut(s) 481
VneI GTGCAC 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 174
XapI RAATTY 4 cut(s) 280, 409, 417, 531
XceI RCATGY 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.