RLG00000020947

N-acetyltransferase 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011423
Physical Location & Seq
Forward (+)
70425589 .. 70427531
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020947

Sequence Viewer

Length: 564 bp
ATGGAGAAAGAGAAGGAGAGTGTGAGCTTGGAAGGAGGGAAAGTGATACTTGTCCCTTACATGAAACAACATGTTCCCAAATACCATGAGTGGATGCAAGACCCAGCTCTGCTTCAAGCCACCGGCTCTGAGCCCCTCACTCTCGACCAGGAATACCAGATGCAGCTCACCTGGACCCAAGACCCCAACAAGCAGACTTTCATTGTGTTAGATAAGCAATTGGTGGTGGGAGAGTTCAAACATGGAGAGGCCCATGTGGAAGCCATGGTAGGTGATGTGAATTTATATATGAATGACCTGGATGATCCCCAAATGGGAGAGGTTGAAATAATGATAGCTGAACCCAAAAGTCGTGGTAAAGGACGTGGGAAGGAATCTGTCTTGATGATGATGGCATTTGCAGTTGTGAATTTGGGAATTCACATCTTCCGTGTTAAAATTGGAGAATCGAATGTTGCATCTCTTAGCTTGTTCCAGAAATTGGTGACATTGGAGCTAAATGTAACAAAGGCCAAGCATGAGGAGCTGCTGCATTTGATGGGTAGCTTGGTTATGCATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

188

Amino Acids

21.13

Weight (kDa)

5.46

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 15 - 161 1.7e-14 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04845 AT2G04845 AT2G04845 AT2G04845 AT2G04845
fragaria_vesca FvH4_6g41300 FvH4_6g41300
malus_domestica MD09G1120700.v1.1
prunus_persica Prupe.3G202800_v2.0.a1
pyrus_communis pycom09g04530 pycom17g10360
rosa_chinensis RchiOBHm_Chr2g0156861
rosa_laevigata RLG00000020947
rosa_multiflora Rmu_sc0009209.1_g000001 Rmu_ssc0000286.1_g000025
rosa_roxburghii Rroxscaffold_2G00092650
rosa_rugosa Rorug02G0456700
rosa_samantha Rh2AG522300 Rh2CG507200
rosa_wichuraiana Rw2G043130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 481
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 3 cut(s) 280, 409, 417
AfiI CCNNNNNNNGG 2 cut(s) 314, 481
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 3 cut(s) 116, 238, 326
AjiI CACGTC 1 cut(s) 365
AjnI CCWGG 3 cut(s) 147, 170, 297
AluBI AGCT 8 cut(s) 27, 107, 166, 338, 468, 496, 526, 546
AluI AGCT 8 cut(s) 27, 107, 166, 338, 468, 496, 526, 546
AlwI GGATC 1 cut(s) 299
AoxI GGCC 2 cut(s) 249, 510
ApeKI GCWGC 3 cut(s) 163, 526, 529
ApoI RAATTY 3 cut(s) 280, 409, 417
AspS9I GGNCC 2 cut(s) 174, 250
AsuHPI GGTGA 3 cut(s) 160, 284, 496
AvaII GGWCC 1 cut(s) 174
BanII GRGCYC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 175, 513, 516
BccI CCATC 2 cut(s) 385, 532
BciT130I CCWGG 3 cut(s) 149, 172, 299
BisI GCNGC 3 cut(s) 164, 527, 530
BlsI GCNGC 3 cut(s) 165, 528, 531
Bme1390I CCNGG 3 cut(s) 149, 172, 299
Bme18I GGWCC 1 cut(s) 174
BmgBI CACGTC 1 cut(s) 365
BmgT120I GGNCC 2 cut(s) 174, 250
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 3 cut(s) 149, 172, 299
BmsI GCATC 3 cut(s) 84, 150, 467
BsaJI CCNNGG 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 481
Bse118I RCCGGY 1 cut(s) 122
BseBI CCWGG 3 cut(s) 149, 172, 299
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 99, 307
BseLI CCNNNNNNNGG 2 cut(s) 314, 481
BseMII CTCAG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 3 cut(s) 175, 513, 516
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 2 cut(s) 251, 512
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 314, 481
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 2 cut(s) 251, 512
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 304
Bsp19I CCATGG 1 cut(s) 264
BspANI GGCC 2 cut(s) 251, 512
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 3 cut(s) 149, 172, 299
BstDEI CTNAG 2 cut(s) 129, 464
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 99, 307
BstKTI GATC 1 cut(s) 307
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 523
BstNI CCWGG 3 cut(s) 149, 172, 299
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 147, 170, 297
BstV1I GCAGC 3 cut(s) 175, 513, 516
BsuRI GGCC 2 cut(s) 251, 512
BtgI CCRYGG 1 cut(s) 264
BtrI CACGTC 1 cut(s) 365
BtsCI GGATG 2 cut(s) 99, 307
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 174, 250
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 7 cut(s) 61, 71, 86, 242, 254, 265, 518
DdeI CTNAG 2 cut(s) 129, 464
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 417
EcoRII CCWGG 3 cut(s) 147, 170, 297
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 7 cut(s) 64, 74, 89, 245, 257, 268, 521
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 1 cut(s) 38
FatI CATG 7 cut(s) 60, 70, 85, 241, 253, 264, 517
Fnu4HI GCNGC 3 cut(s) 164, 527, 530
FokI GGATG 2 cut(s) 106, 314
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 3 cut(s) 164, 527, 530
GluI GCNGC 3 cut(s) 164, 527, 530
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 2 cut(s) 251, 512
HapII CCGG 1 cut(s) 123
Hin1II CATG 7 cut(s) 64, 74, 89, 245, 257, 268, 521
HinfI GANTC 2 cut(s) 374, 446
HpaII CCGG 1 cut(s) 123
HphI GGTGA 3 cut(s) 160, 284, 496
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 143, 382, 475
HpyAV CCTTC 3 cut(s) 7, 26, 364
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 6 cut(s) 97, 163, 401, 458, 532, 556
HpyF10VI GCNNNNNNNGC 1 cut(s) 523
HpyF3I CTNAG 2 cut(s) 129, 464
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 7 cut(s) 64, 74, 89, 245, 257, 268, 521
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 2 cut(s) 493, 523
Lsp1109I GCAGC 3 cut(s) 175, 513, 516
LweI GCATC 3 cut(s) 84, 150, 467
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 2 cut(s) 484, 502
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 1 cut(s) 418
MfeI CAATTG 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 6 cut(s) 218, 280, 409, 417, 438, 479
MnlI CCTC 5 cut(s) 29, 146, 241, 313, 514
Mph1103I ATGCAT 1 cut(s) 558
MseI TTAA 2 cut(s) 435, 562
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 3 cut(s) 149, 172, 299
MunI CAATTG 1 cut(s) 218
MvaI CCWGG 3 cut(s) 149, 172, 299
MwoI GCNNNNNNNGC 1 cut(s) 523
NcoI CCATGG 1 cut(s) 264
NdeII GATC 1 cut(s) 304
NlaIII CATG 7 cut(s) 64, 74, 89, 245, 257, 268, 521
NlaIV GGNNCC 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 484
NsiI ATGCAT 1 cut(s) 558
NspI RCATGY 1 cut(s) 74
PciI ACATGT 1 cut(s) 70
PfeI GAWTC 2 cut(s) 374, 446
PflMI CCANNNNNTGG 1 cut(s) 481
PkrI GCNGC 3 cut(s) 165, 528, 531
PscI ACATGT 1 cut(s) 70
Psp6I CCWGG 3 cut(s) 147, 170, 297
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 3 cut(s) 147, 170, 297
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 2 cut(s) 174, 250
SaqAI TTAA 2 cut(s) 435, 562
SatI GCNGC 3 cut(s) 164, 527, 530
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 2 cut(s) 174, 250
ScrFI CCNGG 3 cut(s) 149, 172, 299
SduI GDGCHC 1 cut(s) 135
SfaNI GCATC 3 cut(s) 84, 150, 467
SinI GGWCC 1 cut(s) 174
Sse9I AATT 6 cut(s) 218, 280, 409, 417, 438, 479
StyD4I CCNGG 3 cut(s) 147, 170, 297
StyI CCWWGG 1 cut(s) 264
TaiI ACGT 1 cut(s) 367
TaqI TCGA 2 cut(s) 144, 449
TasI AATT 6 cut(s) 218, 280, 409, 417, 438, 479
TfiI GAWTC 2 cut(s) 374, 446
Tru1I TTAA 2 cut(s) 435, 562
Tru9I TTAA 2 cut(s) 435, 562
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 3 cut(s) 163, 526, 529
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 3 cut(s) 77, 190, 305
TspGWI ACGGA 1 cut(s) 419
Van91I CCANNNNNTGG 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 174
XapI RAATTY 3 cut(s) 280, 409, 417
XceI RCATGY 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.