Rw2G043130

N-acetyltransferase 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011423
Physical Location & Seq
Forward (+)
69481428 .. 69483881
2454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G043130.1

Sequence Viewer

Length: 663 bp
ATGTGCAAGAGAATTAGGGAAACACGTCTAAAACGCAGAGAGGAAAGGAAGATGGAGAAAGAGAAGGAGAGTGTGAGCTTGGAAGGAGGGAAAGTGATACTTGTCCCTTACATGAAACAACATGTTCCCAAATACCATGAGTGGATGCAAGACCCAGCTCTGCTTCAAGCCACCGGCTCTGAGCCCCTCACTCTCGACCAGGAATACCAGATGCAGCTCACCTGGACCCAAGACCCCAACAAGCAGACTTTCATTGTGTTAGATAAGCAATTGGTTGTGGGAGAGTTCAAACACGGAGAGGCCCATGTGGAAGCCATGGTAGGTGATGTGAATTTATATATGAATGACCTGGATGATCCCCAATTGGGAGAGGTTGAAATAATGATAGCTGAACCCAAAAGTCGTGGTAAAGGACATGGGAAGGAATCTGTCTTGATGATGATGGCATTTGCAGTTTTGAATTTGGGAATTCACATCTTCCGTGTTAAAATTGGAGAATCAAATGTTGCATCTCTTAGCTTGTTCCAGAAATTGGGATTTGAGGAGACTTCTCGTAGTGAAATCTTCAAAGAGGTGACATTGGAGCTAAATGTAACAAAGGCCAAGCATGAGGAGCTGCTGCATTTGATGGGTAGCTTGGTTATGCATACCAACTGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

220

Amino Acids

25.26

Weight (kDa)

6.01

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 32 - 181 7.5e-17 Acetyltransferase (GNAT) domain
Acetyltransf_8 PF13523 39 - 183 5.8e-07 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 72 - 180 3.6e-06 Acetyltransferase (GNAT) family
FR47 PF08445 120 - 184 5e-06 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04845 AT2G04845 AT2G04845 AT2G04845 AT2G04845
fragaria_vesca FvH4_6g41300 FvH4_6g41300
malus_domestica MD09G1120700.v1.1
prunus_persica Prupe.3G202800_v2.0.a1
pyrus_communis pycom09g04530 pycom17g10360
rosa_chinensis RchiOBHm_Chr2g0156861
rosa_laevigata RLG00000020947
rosa_multiflora Rmu_sc0009209.1_g000001 Rmu_ssc0000286.1_g000025
rosa_roxburghii Rroxscaffold_2G00092650
rosa_rugosa Rorug02G0456700
rosa_samantha Rh2AG522300 Rh2CG507200
rosa_wichuraiana Rw2G043130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 532
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 3 cut(s) 331, 460, 468
AfiI CCNNNNNNNGG 2 cut(s) 365, 532
AflIII ACRYGT 2 cut(s) 23, 121
AgsI TTSAA 5 cut(s) 167, 289, 377, 460, 568
AjiI CACGTC 1 cut(s) 26
AjnI CCWGG 3 cut(s) 198, 221, 348
AluBI AGCT 8 cut(s) 78, 158, 217, 389, 519, 586, 616, 636
AluI AGCT 8 cut(s) 78, 158, 217, 389, 519, 586, 616, 636
Alw26I GTCTC 1 cut(s) 539
AlwI GGATC 1 cut(s) 350
AoxI GGCC 2 cut(s) 300, 600
ApeKI GCWGC 3 cut(s) 214, 616, 619
ApoI RAATTY 3 cut(s) 331, 460, 468
AspS9I GGNCC 2 cut(s) 225, 301
AsuHPI GGTGA 3 cut(s) 211, 335, 586
AvaII GGWCC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 186
BbvI GCAGC 3 cut(s) 226, 603, 606
BccI CCATC 3 cut(s) 46, 436, 622
BciT130I CCWGG 3 cut(s) 200, 223, 350
BcoDI GTCTC 1 cut(s) 539
BisI GCNGC 3 cut(s) 215, 617, 620
BlsI GCNGC 3 cut(s) 216, 618, 621
Bme1390I CCNGG 3 cut(s) 200, 223, 350
Bme18I GGWCC 1 cut(s) 225
BmgBI CACGTC 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 225, 301
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 3 cut(s) 200, 223, 350
BmsI GCATC 3 cut(s) 135, 201, 518
BsaJI CCNNGG 1 cut(s) 315
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 532
Bse118I RCCGGY 1 cut(s) 173
BseBI CCWGG 3 cut(s) 200, 223, 350
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 2 cut(s) 150, 358
BseLI CCNNNNNNNGG 2 cut(s) 365, 532
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 557, 626
BseXI GCAGC 3 cut(s) 226, 603, 606
BseYI CCCAGC 1 cut(s) 154
BshFI GGCC 2 cut(s) 302, 602
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 365, 532
BsmAI GTCTC 1 cut(s) 539
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 2 cut(s) 302, 602
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 355
Bsp19I CCATGG 1 cut(s) 315
BspANI GGCC 2 cut(s) 302, 602
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 227
BspPI GGATC 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 3 cut(s) 200, 223, 350
Bst4CI ACNGT 1 cut(s) 656
BstDEI CTNAG 2 cut(s) 180, 515
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 2 cut(s) 150, 358
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 1 cut(s) 613
BstNI CCWGG 3 cut(s) 200, 223, 350
BstNSI RCATGY 1 cut(s) 125
BstSCI CCNGG 3 cut(s) 198, 221, 348
BstV1I GCAGC 3 cut(s) 226, 603, 606
BsuRI GGCC 2 cut(s) 302, 602
BtgI CCRYGG 1 cut(s) 315
BtrI CACGTC 1 cut(s) 26
BtsCI GGATG 2 cut(s) 150, 358
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 2 cut(s) 225, 301
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 7 cut(s) 112, 122, 137, 305, 316, 416, 608
DdeI CTNAG 2 cut(s) 180, 515
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 468
EcoRII CCWGG 3 cut(s) 198, 221, 348
EcoT14I CCWWGG 1 cut(s) 315
EcoT22I ATGCAT 1 cut(s) 648
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 7 cut(s) 115, 125, 140, 308, 319, 419, 611
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 89
FatI CATG 7 cut(s) 111, 121, 136, 304, 315, 415, 607
Fnu4HI GCNGC 3 cut(s) 215, 617, 620
FokI GGATG 2 cut(s) 157, 365
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 3 cut(s) 215, 617, 620
GluI GCNGC 3 cut(s) 215, 617, 620
GsaI CCCAGC 1 cut(s) 158
HaeIII GGCC 2 cut(s) 302, 602
HapII CCGG 1 cut(s) 174
Hin1II CATG 7 cut(s) 115, 125, 140, 308, 319, 419, 611
HinfI GANTC 2 cut(s) 425, 497
HpaII CCGG 1 cut(s) 174
HphI GGTGA 3 cut(s) 211, 335, 586
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 3 cut(s) 194, 433, 526
HpyAV CCTTC 3 cut(s) 58, 77, 415
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 7 cut(s) 6, 148, 214, 452, 509, 622, 646
HpyF10VI GCNNNNNNNGC 1 cut(s) 613
HpyF3I CTNAG 2 cut(s) 180, 515
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 7 cut(s) 115, 125, 140, 308, 319, 419, 611
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 2 cut(s) 583, 613
Lsp1109I GCAGC 3 cut(s) 226, 603, 606
LweI GCATC 3 cut(s) 135, 201, 518
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 2 cut(s) 574, 592
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 3 cut(s) 61, 469, 556
MfeI CAATTG 2 cut(s) 269, 362
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 8 cut(s) 12, 269, 331, 362, 460, 468, 489, 530
MnlI CCTC 8 cut(s) 34, 80, 197, 292, 364, 535, 565, 604
Mph1103I ATGCAT 1 cut(s) 648
MseI TTAA 1 cut(s) 486
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 3 cut(s) 200, 223, 350
MunI CAATTG 2 cut(s) 269, 362
MvaI CCWGG 3 cut(s) 200, 223, 350
MwoI GCNNNNNNNGC 1 cut(s) 613
NcoI CCATGG 1 cut(s) 315
NdeII GATC 1 cut(s) 355
NlaIII CATG 7 cut(s) 115, 125, 140, 308, 319, 419, 611
NlaIV GGNNCC 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 574
NsiI ATGCAT 1 cut(s) 648
NspI RCATGY 1 cut(s) 125
PciI ACATGT 1 cut(s) 121
PfeI GAWTC 2 cut(s) 425, 497
PflMI CCANNNNNTGG 1 cut(s) 532
PkrI GCNGC 3 cut(s) 216, 618, 621
PscI ACATGT 1 cut(s) 121
Psp6I CCWGG 3 cut(s) 198, 221, 348
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 3 cut(s) 198, 221, 348
PspN4I GGNNCC 1 cut(s) 227
PspPI GGNCC 2 cut(s) 225, 301
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 3 cut(s) 215, 617, 620
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 2 cut(s) 225, 301
ScrFI CCNGG 3 cut(s) 200, 223, 350
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 3 cut(s) 135, 201, 518
SinI GGWCC 1 cut(s) 225
Sse9I AATT 8 cut(s) 12, 269, 331, 362, 460, 468, 489, 530
StyD4I CCNGG 3 cut(s) 198, 221, 348
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 656
TaiI ACGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 195
TasI AATT 8 cut(s) 12, 269, 331, 362, 460, 468, 489, 530
TfiI GAWTC 2 cut(s) 425, 497
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 3 cut(s) 214, 616, 619
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 3 cut(s) 128, 241, 356
TspGWI ACGGA 2 cut(s) 309, 470
Van91I CCANNNNNTGG 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 3 cut(s) 331, 460, 468
XceI RCATGY 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.