FvH4_6g45100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018064
Physical Location & Seq
Forward (+)
34626797 .. 34627647
851 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45100.t1

Sequence Viewer

Length: 399 bp
ATGAACGGTCTGGCCCGAAACACCACCGTGAAGCGTCTGAGCCGGCGGTTCAAAGGCTATGAGCCTTTGGATGAAGCGACGAGAAGCGAAAACGTGCAAGAGCCACCGCGAAGATCGATGTCGTTTAAGCGCAAGAAAGTGGCGAGTTTTCCTTTGAGGACTGCAGAGGATGAAGCCAAGCAACGACGGCAGATATTCATTAACTCCTACAAGTTTGAAACGGCGGATAATTCGCAGCGGTCGGTGTGTTGTCGGAAGTTGAACAAGGTGGTTAGTAAGGTCAAGACATCAGTAAAGAAGCTCATGTCGTCGGTATCGGAAGCTGGGGCATTTAGGTCTTGTAATTGTCGTTTTGCCATTCAAGCTTTCTCTCCTAAACCCAGTAGCGAGTGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.21

Weight (kDa)

10.44

Isoelectric Point (pI)

67.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45100
malus_domestica MD09G1089500.v1.1
prunus_persica Prupe.3G235900_v2.0.a1
rosa_laevigata RLG00000021349
rosa_multiflora Rmu_sc0004206.1_g000013
rosa_roxburghii Rroxscaffold_2G00087880
rosa_rugosa Rorug02G0498200
rosa_samantha Rh2AG564100 Rh2BG576700 Rh2CG546700 Rh2DG586500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 109
AciI CCGC 4 cut(s) 46, 107, 224, 238
AgsI TTSAA 4 cut(s) 52, 218, 262, 362
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 3 cut(s) 301, 323, 365
AluI AGCT 3 cut(s) 301, 323, 365
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 247
BceAI ACGGC 2 cut(s) 203, 237
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 13
BmrI ACTGGG 1 cut(s) 375
BmuI ACTGGG 1 cut(s) 375
Bsa29I ATCGAT 1 cut(s) 116
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 381
BseCI ATCGAT 1 cut(s) 116
BseGI GGATG 2 cut(s) 76, 175
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 247
BseYI CCCAGC 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 242
BshFI GGCC 1 cut(s) 14
BshVI ATCGAT 1 cut(s) 116
BsiEI CGRYCG 1 cut(s) 242
BsiSI CCGG 1 cut(s) 43
BsnI GGCC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 113
BspACI CCGC 4 cut(s) 46, 107, 224, 238
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 30
BspDI ATCGAT 1 cut(s) 116
BspFNI CGCG 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 42
BssMI GATC 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 8, 28
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 2 cut(s) 76, 175
BstFNI CGCG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 1 cut(s) 116
BstMBI GATC 1 cut(s) 113
BstMCI CGRYCG 1 cut(s) 242
BstMWI GCNNNNNNNGC 2 cut(s) 187, 362
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 247
Bsu15I ATCGAT 1 cut(s) 116
BsuRI GGCC 1 cut(s) 14
BsuTUI ATCGAT 1 cut(s) 116
BtsCI GGATG 2 cut(s) 76, 175
Cac8I GCNNGC 1 cut(s) 44
CfoI GCGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 13
ClaI ATCGAT 1 cut(s) 116
CseI GACGC 1 cut(s) 23
CviAII CATG 1 cut(s) 304
CviJI RGCY 9 cut(s) 14, 42, 57, 64, 103, 176, 301, 323, 365
CviKI_1 RGCY 9 cut(s) 14, 42, 57, 64, 103, 176, 301, 323, 365
DdeI CTNAG 1 cut(s) 38
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
EciI GGCGGA 1 cut(s) 239
FaeI CATG 1 cut(s) 307
FaiI YATR 2 cut(s) 60, 305
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 2 cut(s) 83, 182
Fsp4HI GCNGC 1 cut(s) 236
GlaI GCGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 236
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 132
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 363
HpaII CCGG 1 cut(s) 43
Hpy188I TCNGA 3 cut(s) 39, 255, 319
Hpy188III TCNNGA 1 cut(s) 283
Hpy99I CGWCG 3 cut(s) 82, 189, 313
HpyCH4III ACNGT 2 cut(s) 8, 28
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 97, 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 362
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 1 cut(s) 130
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Kzo9I GATC 1 cut(s) 113
LpnPI CCDG 3 cut(s) 56, 309, 394
Lsp1109I GCAGC 1 cut(s) 247
MaeII ACGT 1 cut(s) 93
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MboII GAAGA 1 cut(s) 123
MluCI AATT 2 cut(s) 229, 343
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 2 cut(s) 150, 160
MroNI GCCGGC 1 cut(s) 42
MseI TTAA 2 cut(s) 126, 201
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 187, 362
NaeI GCCGGC 1 cut(s) 44
NdeII GATC 1 cut(s) 113
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 1 cut(s) 307
OliI CACNNNNGTG 1 cut(s) 26
PdiI GCCGGC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 323
PspPI GGNCC 1 cut(s) 13
PstI CTGCAG 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 2 cut(s) 126, 201
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 1 cut(s) 113
Sau96I GGNCC 1 cut(s) 13
SetI ASST 7 cut(s) 96, 270, 282, 303, 325, 338, 367
SfcI CTRYAG 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 2 cut(s) 229, 343
SsiI CCGC 4 cut(s) 46, 107, 224, 238
TaaI ACNGT 2 cut(s) 8, 28
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 116
TasI AATT 2 cut(s) 229, 343
Tru1I TTAA 2 cut(s) 126, 201
Tru9I TTAA 2 cut(s) 126, 201
TseI GCWGC 1 cut(s) 235
TspDTI ATGAA 4 cut(s) 17, 87, 186, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.