Rmu_sc0004206.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004206.1
OG0018064
Physical Location & Seq
Reverse (-)
44262 .. 45552
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004206.1_g000013.1.cds

Sequence Viewer

Length: 720 bp
atgaatggtctagcccaaaacaccaccgttaagcgtctgagcaggcggttcaatggctatgagcctttggatgaagcgatgggaagcgaaaacgtgcaagacccgccgcagagatcgatgtcgtttaagcgcaagaaagtggcggcttttcctttgaggactagagaggatgaagccaagcaacgacggcagatattcctcaactcctacaagtttgaaacggcggataaaaagcagcggtcggtgtgtagtcggaagatgaacaaggtggtttgtaaggtcaagacatcagcagcgaagctcctgtcatcgtttttgggagctggtgctttcagatcttgtaattgtcgtttggccattcaagctttctctcctagaccccgtagcaagcgaagtggagaactggaggaccgaggacgactggagagtggagcagagactccagttcctgtcgctgggtgtttgcaaatggactggaggaggacgactgggtattctttctcagtgcagtccctcactgagtctgtcgctgggcgcctgggctatcctctgttgcagagaaggcgagaggaggactggaggaggacgactggagagtggaggagagatgcagatcgaacaggcgaacagcccgaagtgacgaagtcgagctctggagtcgggctaggacactctaggagggtacttcgggcgggcttcaaatggacaacacccatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.14

Weight (kDa)

10.59

Isoelectric Point (pI)

67.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45100
malus_domestica MD09G1089500.v1.1
prunus_persica Prupe.3G235900_v2.0.a1
rosa_laevigata RLG00000021349
rosa_multiflora Rmu_sc0004206.1_g000013
rosa_roxburghii Rroxscaffold_2G00087880
rosa_rugosa Rorug02G0498200
rosa_samantha Rh2AG564100 Rh2BG576700 Rh2CG546700 Rh2DG586500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 534
AciI CCGC 7 cut(s) 46, 104, 107, 143, 224, 238, 692
AcoI YGGCCR 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 535
AfaI GTAC 1 cut(s) 684
AfiI CCNNNNNNNGG 1 cut(s) 455
AgsI TTSAA 4 cut(s) 52, 218, 362, 700
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 4 cut(s) 301, 323, 365, 651
AluI AGCT 4 cut(s) 301, 323, 365, 651
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 1 cut(s) 431
AlwNI CAGNNNCTG 1 cut(s) 449
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 235, 293
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspLEI GCGC 2 cut(s) 132, 537
AspS9I GGNCC 1 cut(s) 409
AvaII GGWCC 1 cut(s) 409
BalI TGGCCA 1 cut(s) 356
BanI GGYRCC 1 cut(s) 534
BanII GRGCYC 1 cut(s) 653
Bbv12I GWGCWC 1 cut(s) 653
BbvI GCAGC 2 cut(s) 247, 305
BccI CCATC 1 cut(s) 73
BceAI ACGGC 2 cut(s) 203, 237
BciT130I CCWGG 1 cut(s) 539
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 5 cut(s) 11, 162, 375, 665, 675
BfoI RGCGCY 1 cut(s) 538
BglII AGATCT 1 cut(s) 335
BisI GCNGC 4 cut(s) 107, 144, 236, 294
BlsI GCNGC 4 cut(s) 108, 145, 237, 295
Bme1390I CCNGG 1 cut(s) 539
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 1 cut(s) 536
BmrFI CCNGG 1 cut(s) 539
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 1 cut(s) 598
BmuI ACTGGG 1 cut(s) 498
BpmI CTGGAG 7 cut(s) 425, 426, 443, 496, 598, 612, 675
Bsa29I ATCGAT 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 535
BsaJI CCNNGG 2 cut(s) 412, 538
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse1I ACTGG 7 cut(s) 408, 426, 443, 479, 493, 581, 595
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 1 cut(s) 539
BseCI ATCGAT 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 412, 538
BseGI GGATG 2 cut(s) 76, 175
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMII CTCAG 3 cut(s) 29, 510, 516
BseNI ACTGG 7 cut(s) 408, 426, 443, 479, 493, 581, 595
BseRI GAGGAG 4 cut(s) 493, 584, 595, 616
BseXI GCAGC 2 cut(s) 247, 305
BseYI CCCAGC 2 cut(s) 455, 530
BsgI GTGCAG 1 cut(s) 527
Bsh1285I CGRYCG 1 cut(s) 242
BshFI GGCC 1 cut(s) 356
BshNI GGYRCC 1 cut(s) 534
BshVI ATCGAT 1 cut(s) 116
BsiEI CGRYCG 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 653
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 653
Bsp143I GATC 3 cut(s) 113, 335, 613
BspACI CCGC 7 cut(s) 46, 104, 107, 143, 224, 238, 692
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 3 cut(s) 30, 511, 515
BspDI ATCGAT 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 534
BsrI ACTGG 7 cut(s) 408, 426, 443, 479, 493, 581, 595
BssECI CCNNGG 2 cut(s) 412, 538
BssMI GATC 3 cut(s) 113, 335, 613
BssNI GRCGYC 1 cut(s) 535
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 535
BstC8I GCNNGC 3 cut(s) 44, 389, 694
BstDEI CTNAG 3 cut(s) 38, 502, 519
BstF5I GGATG 2 cut(s) 76, 175
BstH2I RGCGCY 1 cut(s) 538
BstHHI GCGC 2 cut(s) 132, 537
BstKTI GATC 3 cut(s) 116, 338, 616
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 3 cut(s) 113, 335, 613
BstMCI CGRYCG 1 cut(s) 242
BstMWI GCNNNNNNNGC 4 cut(s) 103, 187, 362, 562
BstNI CCWGG 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 537
BstV1I GCAGC 2 cut(s) 247, 305
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
Bsu15I ATCGAT 1 cut(s) 116
BsuRI GGCC 1 cut(s) 356
BsuTUI ATCGAT 1 cut(s) 116
BtgZI GCGATG 1 cut(s) 92
BtsCI GGATG 2 cut(s) 76, 175
BtsIMutI CAGTG 2 cut(s) 510, 516
Cac8I GCNNGC 3 cut(s) 44, 389, 694
CaiI CAGNNNCTG 1 cut(s) 449
CfoI GCGC 2 cut(s) 132, 537
Cfr13I GGNCC 1 cut(s) 409
ClaI ATCGAT 1 cut(s) 116
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 683
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviQI GTAC 1 cut(s) 683
DdeI CTNAG 3 cut(s) 38, 502, 519
DinI GGCGCC 1 cut(s) 536
DpnI GATC 3 cut(s) 115, 337, 615
DpnII GATC 3 cut(s) 113, 335, 613
EaeI YGGCCR 1 cut(s) 354
EciI GGCGGA 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 651
Eco24I GRGCYC 1 cut(s) 653
Eco47I GGWCC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 651
EcoICRI GAGCTC 1 cut(s) 651
EcoRII CCWGG 1 cut(s) 537
EcoT38I GRGCYC 1 cut(s) 653
EgeI GGCGCC 1 cut(s) 536
EheI GGCGCC 1 cut(s) 536
FaiI YATR 1 cut(s) 60
FaqI GGGAC 1 cut(s) 496
FauI CCCGC 2 cut(s) 111, 685
Fnu4HI GCNGC 4 cut(s) 107, 144, 236, 294
FokI GGATG 2 cut(s) 83, 182
FriOI GRGCYC 1 cut(s) 653
Fsp4HI GCNGC 4 cut(s) 107, 144, 236, 294
FspBI CTAG 5 cut(s) 11, 162, 375, 665, 675
GlaI GCGC 2 cut(s) 131, 536
GluI GCNGC 4 cut(s) 107, 144, 236, 294
GsaI CCCAGC 2 cut(s) 459, 534
GsuI CTGGAG 7 cut(s) 425, 426, 443, 496, 598, 612, 675
HaeII RGCGCY 1 cut(s) 538
HaeIII GGCC 1 cut(s) 356
HgaI GACGC 1 cut(s) 23
HhaI GCGC 2 cut(s) 132, 537
Hin1I GRCGYC 1 cut(s) 535
Hin6I GCGC 2 cut(s) 130, 535
HinP1I GCGC 2 cut(s) 130, 535
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 3 cut(s) 439, 521, 657
Hpy188I TCNGA 3 cut(s) 39, 255, 335
Hpy188III TCNNGA 2 cut(s) 283, 654
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 555
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 5 cut(s) 97, 466, 508, 556, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 187, 362, 562
HpyF3I CTNAG 3 cut(s) 38, 502, 519
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 535
HspAI GCGC 2 cut(s) 130, 535
KasI GGCGCC 1 cut(s) 534
Kzo9I GATC 3 cut(s) 113, 335, 613
LmnI GCTCC 3 cut(s) 306, 320, 431
Lsp1109I GCAGC 2 cut(s) 247, 305
LweI GCATC 1 cut(s) 598
MaeI CTAG 5 cut(s) 11, 162, 375, 665, 675
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 637
MalI GATC 3 cut(s) 115, 337, 615
MboI GATC 3 cut(s) 113, 335, 613
MboII GAAGA 1 cut(s) 268
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 653
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 1 cut(s) 343
MluNI TGGCCA 1 cut(s) 356
Mly113I GGCGCC 1 cut(s) 535
MlyI GAGTC 3 cut(s) 433, 530, 666
MmeI TCCRAC 1 cut(s) 233
Mox20I TGGCCA 1 cut(s) 356
MscI TGGCCA 1 cut(s) 356
MseI TTAA 3 cut(s) 30, 126, 718
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 539
MwoI GCNNNNNNNGC 4 cut(s) 103, 187, 362, 562
NarI GGCGCC 1 cut(s) 535
NdeII GATC 3 cut(s) 113, 335, 613
NlaIV GGNNCC 1 cut(s) 536
NmuCI GTSAC 1 cut(s) 637
PflFI GACNNNGTC 1 cut(s) 643
PkrI GCNGC 4 cut(s) 108, 145, 237, 295
PleI GAGTC 3 cut(s) 433, 529, 665
PluTI GGCGCC 1 cut(s) 538
PpsI GAGTC 3 cut(s) 433, 529, 665
Psp124BI GAGCTC 1 cut(s) 653
Psp6I CCWGG 1 cut(s) 537
PspFI CCCAGC 2 cut(s) 455, 530
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 536
PspPI GGNCC 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 335
PsyI GACNNNGTC 1 cut(s) 643
RsaI GTAC 1 cut(s) 684
RsaNI GTAC 1 cut(s) 683
SacI GAGCTC 1 cut(s) 653
SaqAI TTAA 3 cut(s) 30, 126, 718
SatI GCNGC 4 cut(s) 107, 144, 236, 294
Sau3AI GATC 3 cut(s) 113, 335, 613
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 3 cut(s) 433, 530, 666
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 1 cut(s) 653
SetI ASST 7 cut(s) 96, 270, 282, 303, 325, 367, 653
SfaNI GCATC 1 cut(s) 598
SfoI GGCGCC 1 cut(s) 536
SinI GGWCC 1 cut(s) 409
Sse9I AATT 1 cut(s) 343
SsiI CCGC 7 cut(s) 46, 104, 107, 143, 224, 238, 692
SspDI GGCGCC 1 cut(s) 534
SspMI CTAG 5 cut(s) 11, 162, 375, 665, 675
SstI GAGCTC 1 cut(s) 653
StyD4I CCNGG 1 cut(s) 537
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 96
TaqI TCGA 3 cut(s) 116, 616, 647
TaqII GACCGA 1 cut(s) 426
TasI AATT 1 cut(s) 343
TauI GCSGC 2 cut(s) 109, 146
Tru1I TTAA 3 cut(s) 30, 126, 718
Tru9I TTAA 3 cut(s) 30, 126, 718
TscAI CASTG 2 cut(s) 510, 523
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 2 cut(s) 235, 293
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 4 cut(s) 17, 87, 186, 275
TspRI CASTG 2 cut(s) 510, 523
Tth111I GACNNNGTC 1 cut(s) 643
VpaK11BI GGWCC 1 cut(s) 409
XspI CTAG 5 cut(s) 11, 162, 375, 665, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.