Rroxscaffold_2G00087880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018064
Physical Location & Seq
Reverse (-)
9938528 .. 9938926
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087880.1

Sequence Viewer

Length: 399 bp
ATGAACGGTCCAGCCCGAAACACCACCGTGAAGCGTCTGGGCCGGCGGTTCAATGGCTATGAGCCTTTGGATGAAGCGATGGGAAGCGAAAACGTGCAAGACCCGCCGCGGAGATCGATGTCGTTTAAGCGCAAGAAAGTGGCGGCTTTTCCTTTGAGGACTAGAGAGGATGAAGCCAAGCAACGACGGCAGATATTCCTTAACTCCTACAAGTTTGAAACGGCTGATAAAACTCAGCGGTCGGTGTGTAGTCGGAAGATGAACAAGGTGGTTTGTCAGGTCAAGACATCAGCAGCGAAGCTCGTGTCATCGTTTTTGGGAGCTGGTGCTTTCAGATCTTGTAATTGTCGTTTGGCCATTCAAGCTTTCTCTCCTAGGCCCCGTAGCAAGTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.13

Weight (kDa)

10.96

Isoelectric Point (pI)

60.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45100
malus_domestica MD09G1089500.v1.1
prunus_persica Prupe.3G235900_v2.0.a1
rosa_laevigata RLG00000021349
rosa_multiflora Rmu_sc0004206.1_g000013
rosa_roxburghii Rroxscaffold_2G00087880
rosa_rugosa Rorug02G0498200
rosa_samantha Rh2AG564100 Rh2BG576700 Rh2CG546700 Rh2DG586500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 109
AciI CCGC 6 cut(s) 46, 104, 107, 109, 143, 238
AcoI YGGCCR 1 cut(s) 354
AgsI TTSAA 3 cut(s) 52, 218, 362
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 3 cut(s) 301, 323, 365
AluI AGCT 3 cut(s) 301, 323, 365
AoxI GGCC 3 cut(s) 40, 354, 377
ApeKI GCWGC 1 cut(s) 293
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspA2I CCTAGG 1 cut(s) 374
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 3 cut(s) 8, 40, 378
AvaII GGWCC 1 cut(s) 8
AvrII CCTAGG 1 cut(s) 374
BalI TGGCCA 1 cut(s) 356
BauI CACGAG 1 cut(s) 302
BbvI GCAGC 1 cut(s) 305
BccI CCATC 1 cut(s) 73
BceAI ACGGC 2 cut(s) 203, 237
BfaI CTAG 2 cut(s) 162, 375
BglII AGATCT 1 cut(s) 335
BisI GCNGC 3 cut(s) 107, 144, 294
BlnI CCTAGG 1 cut(s) 374
BlsI GCNGC 3 cut(s) 108, 145, 295
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 3 cut(s) 8, 40, 378
BmiI GGNNCC 1 cut(s) 380
Bsa29I ATCGAT 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 107, 374
Bse118I RCCGGY 1 cut(s) 42
BseCI ATCGAT 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 107, 374
BseGI GGATG 2 cut(s) 76, 175
BseMII CTCAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 242
BshFI GGCC 3 cut(s) 42, 356, 379
BshVI ATCGAT 1 cut(s) 116
BsiEI CGRYCG 1 cut(s) 242
BsiSI CCGG 1 cut(s) 43
BsnI GGCC 3 cut(s) 42, 356, 379
Bsp143I GATC 2 cut(s) 113, 335
BspACI CCGC 6 cut(s) 46, 104, 107, 109, 143, 238
BspANI GGCC 3 cut(s) 42, 356, 379
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 116
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 380
BsrFI RCCGGY 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 107, 374
BssMI GATC 2 cut(s) 113, 335
BssSI CACGAG 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 374
Bst2BI CACGAG 1 cut(s) 302
Bst4CI ACNGT 2 cut(s) 8, 28
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 76, 175
BstFNI CGCG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 2 cut(s) 116, 338
BstMBI GATC 2 cut(s) 113, 335
BstMCI CGRYCG 1 cut(s) 242
BstMWI GCNNNNNNNGC 3 cut(s) 103, 187, 362
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
Bsu15I ATCGAT 1 cut(s) 116
BsuRI GGCC 3 cut(s) 42, 356, 379
BsuTUI ATCGAT 1 cut(s) 116
BtgI CCRYGG 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 92
BtsCI GGATG 2 cut(s) 76, 175
Cac8I GCNNGC 1 cut(s) 44
CfoI GCGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 3 cut(s) 8, 40, 378
Cfr42I CCGCGG 1 cut(s) 110
ClaI ATCGAT 1 cut(s) 116
CseI GACGC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 234
DpnI GATC 2 cut(s) 115, 337
DpnII GATC 2 cut(s) 113, 335
EaeI YGGCCR 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 374
FaiI YATR 1 cut(s) 60
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 107, 144, 294
FokI GGATG 2 cut(s) 83, 182
Fsp4HI GCNGC 3 cut(s) 107, 144, 294
FspBI CTAG 2 cut(s) 162, 375
GlaI GCGC 1 cut(s) 131
GluI GCNGC 3 cut(s) 107, 144, 294
HaeIII GGCC 3 cut(s) 42, 356, 379
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 132
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 363
HpaII CCGG 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 255, 335
Hpy188III TCNNGA 1 cut(s) 283
Hpy99I CGWCG 1 cut(s) 189
HpyCH4III ACNGT 2 cut(s) 8, 28
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 187, 362
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 93
HspAI GCGC 1 cut(s) 130
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
KspI CCGCGG 1 cut(s) 110
Kzo9I GATC 2 cut(s) 113, 335
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 5 cut(s) 23, 24, 56, 263, 309
Lsp1109I GCAGC 1 cut(s) 305
MaeI CTAG 2 cut(s) 162, 375
MaeII ACGT 1 cut(s) 93
MalI GATC 2 cut(s) 115, 337
MboI GATC 2 cut(s) 113, 335
MboII GAAGA 1 cut(s) 268
MflI RGATCY 1 cut(s) 335
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 1 cut(s) 343
MluNI TGGCCA 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 2 cut(s) 150, 160
Mox20I TGGCCA 1 cut(s) 356
MroNI GCCGGC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 356
MseI TTAA 2 cut(s) 126, 201
MslI CAYNNNNRTG 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 2 cut(s) 109, 238
MspI CCGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 3 cut(s) 103, 187, 362
NaeI GCCGGC 1 cut(s) 44
NdeII GATC 2 cut(s) 113, 335
NgoMIV GCCGGC 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 380
OliI CACNNNNGTG 1 cut(s) 26
PdiI GCCGGC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 108, 145, 295
PspN4I GGNNCC 1 cut(s) 380
PspPI GGNCC 3 cut(s) 8, 40, 378
PsuI RGATCY 1 cut(s) 335
RseI CAYNNNNRTG 1 cut(s) 26
SacII CCGCGG 1 cut(s) 110
SaqAI TTAA 2 cut(s) 126, 201
SatI GCNGC 3 cut(s) 107, 144, 294
Sau3AI GATC 2 cut(s) 113, 335
Sau96I GGNCC 3 cut(s) 8, 40, 378
SetI ASST 6 cut(s) 96, 270, 282, 303, 325, 367
Sfr303I CCGCGG 1 cut(s) 110
SgrBI CCGCGG 1 cut(s) 110
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 1 cut(s) 343
SsiI CCGC 6 cut(s) 46, 104, 107, 109, 143, 238
SspMI CTAG 2 cut(s) 162, 375
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 2 cut(s) 8, 28
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 116
TasI AATT 1 cut(s) 343
TauI GCSGC 2 cut(s) 109, 146
Tru1I TTAA 2 cut(s) 126, 201
Tru9I TTAA 2 cut(s) 126, 201
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 4 cut(s) 17, 87, 186, 275
VpaK11BI GGWCC 1 cut(s) 8
XmaJI CCTAGG 1 cut(s) 374
XspI CTAG 2 cut(s) 162, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.