MD09G1089500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0018064
Physical Location & Seq
Reverse (-)
6561500 .. 6561986
487 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1089500.v1.1.491

Sequence Viewer

Length: 189 bp
ATGGTAGTACAAATAATACTGAAAGACGTTCCTGGTGGTTGCTGTCACATATATACAGCCATGGACGGTCTAGTCCGCAGCGGCACCACCAGCATGAGCCGGCGGTTTGATATTTATAGTTACGAGCCATTGGATCGAGTGAAGACAAGTGCAAACAGGCATGGTGTTGGAGGGAGGAGATCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.89

Weight (kDa)

9.59

Isoelectric Point (pI)

73.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45100
malus_domestica MD09G1089500.v1.1
prunus_persica Prupe.3G235900_v2.0.a1
rosa_laevigata RLG00000021349
rosa_multiflora Rmu_sc0004206.1_g000013
rosa_roxburghii Rroxscaffold_2G00087880
rosa_rugosa Rorug02G0498200
rosa_samantha Rh2AG564100 Rh2BG576700 Rh2CG546700 Rh2DG586500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 83
AciI CCGC 3 cut(s) 76, 81, 103
AclWI GGATC 1 cut(s) 141
AfaI GTAC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 31
AlwI GGATC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 33
BfaI CTAG 1 cut(s) 71
BisI GCNGC 2 cut(s) 79, 82
BlsI GCNGC 2 cut(s) 80, 83
Bme1390I CCNGG 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 60
Bse118I RCCGGY 1 cut(s) 99
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 100
Bsp143I GATC 2 cut(s) 133, 179
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 3 cut(s) 76, 81, 103
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 2 cut(s) 133, 179
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 101
BstDSI CCRYGG 1 cut(s) 60
BstKTI GATC 2 cut(s) 136, 182
BstMBI GATC 2 cut(s) 133, 179
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 99
Csp6I GTAC 1 cut(s) 8
CviAII CATG 3 cut(s) 61, 94, 161
CviJI RGCY 3 cut(s) 59, 99, 127
CviKI_1 RGCY 3 cut(s) 59, 99, 127
CviQI GTAC 1 cut(s) 8
DpnI GATC 2 cut(s) 135, 181
DpnII GATC 2 cut(s) 133, 179
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 3 cut(s) 64, 97, 164
FaiI YATR 7 cut(s) 50, 52, 54, 62, 95, 117, 162
FatI CATG 3 cut(s) 60, 93, 160
Fnu4HI GCNGC 2 cut(s) 79, 82
Fsp4HI GCNGC 2 cut(s) 79, 82
FspBI CTAG 1 cut(s) 71
GluI GCNGC 2 cut(s) 79, 82
HapII CCGG 1 cut(s) 100
Hin1II CATG 3 cut(s) 64, 97, 164
HpaII CCGG 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 3 cut(s) 64, 97, 164
KroI GCCGGC 1 cut(s) 99
KroNI GCCGGC 1 cut(s) 101
Kzo9I GATC 2 cut(s) 133, 179
LpnPI CCDG 5 cut(s) 18, 45, 103, 113, 142
Lsp1109I GCAGC 1 cut(s) 90
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 44, 119
MalI GATC 2 cut(s) 135, 181
MboI GATC 2 cut(s) 133, 179
MboII GAAGA 1 cut(s) 154
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 2 cut(s) 164, 168
MroNI GCCGGC 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 90
NaeI GCCGGC 1 cut(s) 101
NcoI CCATGG 1 cut(s) 60
NdeII GATC 2 cut(s) 133, 179
NgoMIV GCCGGC 1 cut(s) 99
NlaIII CATG 3 cut(s) 64, 97, 164
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 44
PdiI GCCGGC 1 cut(s) 101
PkrI GCNGC 2 cut(s) 80, 83
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 85
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 92
SatI GCNGC 2 cut(s) 79, 82
Sau3AI GATC 2 cut(s) 133, 179
ScrFI CCNGG 1 cut(s) 33
SetI ASST 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 92
SsiI CCGC 3 cut(s) 76, 81, 103
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 31
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 136
TatI WGTACW 1 cut(s) 7
TauI GCSGC 1 cut(s) 84
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 44
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.