Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016904

Physical Location & Seq

Genomic Coordinates Reverse (-)

35103796 .. 35105255

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45851.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGAGAGAGATAGGATTAGCAGTCTTCCTGCAGAAGTACTAGATAGTGTCCTAACTTTGTTGCCACTAAAACAAGTTGTGCAGACTAGCATCCTGTCGAAAACTTGGAGATACAAATGGACCTGCCTGTCACAGTTTGTTATTGATGACAAACTCATCCCCACTTCAATAAGAGACATAGCGGCAAGATGGAGGTTCATCATGATAATTCTTCATCAAATTCAAGCGCATGGCTCTGTCTCTGCGATAGAGAAGTTTAAGCTCTCTGCTTATTGCTCCCCAGACAGGGTTGATTTAGACCAGTGGGTTAAATTCTTAGCTGGGAAAGGTCTCAAGGAGTTGATCTTTAAAGAGTCTACTCTTTTTAACCATTGTGATTTTAAACTGCCTTGTTCTCTATTCTCTTGTCCACAACTGGATCATTTAGACCTCTCCTCTTGTGAGATCAATCCACCTCCGGAAACACACATTGGATTCAAGTCTCTCAGAAGTCTCCAGCTCAATAAAGTCAGCACAAAGGCATGCATACTAGAGCGGCTAATTCCCAACTGCCCTCTTCTTGAAAGACTGACATTATTGCATCTTGTTTTCCCTATATTTCTCAGAATCCAAAACCCAAACCTCAAGTATCTGGAGATACATTCCAAATTCAAAGATTTATGTCTTGCAGATTGTCCTTCTCTGCTTAGCGTTGACATTTCCTTGAGGAGGTGGTGGTGGAACGATGCCCCATACCATAGACAATCCAATTTATCTAGGGTCATTGGTCACCTACATACTATTGAGAAGCTCAGCCTACACAGTAGTTTCCTACAGCTTTTGGGTCATGAAAATGTACCATACAGACTTCCTAGCCCTCTTCATCACTTGACTGATTTTCAACTCAAGGATCTAAGGTTAGACTCCATGGCACAAGTGATAATGTGTCTCTGCATTCTTAGAAGTGCTCCAAACTTGGAGAAACTATTCCTTTTGATTTCTCATACTTGCTCCACACCTGTTGAGGAATTCCTAGAAACACAATATCAGTCATCTTATCTGAACCTTCCCGGACTCAAAACAGTGAAGATAATAGCTATTAAAGGATTTGAAACTGAATCAGTACTTACCAAGTTCATAAAGGATCGATCCCCTATTCTGGAAAGAATGACTGTTCAACATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

389

Amino Acids

44.83

Weight (kDa)

8.71

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	83 - 384	6.9e-10	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	99 - 322	3.3e-20	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016904)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45851
malus_domestica	MD09G1079300.v1.1 MD17G1069700.v1.1
prunus_persica	Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1
pyrus_communis	pycom09g00610 pycom17g06980
rosa_laevigata	RLG00000021436
rosa_rugosa	Rorug02G0506500
rosa_samantha	Rh2DG594900
rosa_wichuraiana	Rw2G047540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	131
AccBSI	CCGCTC	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	356
AccIII	TCCGGA	1 cut(s)	457
AciI	CCGC	2 cut(s)	182, 535
AclWI	GGATC	4 cut(s)	426, 897, 1122, 1131
AcsI	RAATTY	4 cut(s)	219, 311, 647, 1007
AfaI	GTAC	3 cut(s)	39, 837, 1104
AfiI	CCNNNNNNNGG	4 cut(s)	285, 286, 708, 1138
AgsI	TTSAA	8 cut(s)	168, 224, 478, 563, 652, 881, 1091, 1157
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
AluBI	AGCT	6 cut(s)	262, 320, 499, 790, 817, 1076
AluI	AGCT	6 cut(s)	262, 320, 499, 790, 817, 1076
Alw21I	GWGCWC	1 cut(s)	949
Alw26I	GTCTC	6 cut(s)	168, 244, 335, 486, 497, 932
AlwI	GGATC	4 cut(s)	426, 897, 1122, 1131
Aor13HI	TCCGGA	1 cut(s)	457
ApoI	RAATTY	4 cut(s)	219, 311, 647, 1007
Asp700I	GAANNNNTTC	1 cut(s)	965
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	1050
AsuHPI	GGTGA	1 cut(s)	761
AvaII	GGWCC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	949
BccI	CCATC	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	1050
BcoDI	GTCTC	6 cut(s)	168, 244, 335, 486, 497, 932
BfaI	CTAG	6 cut(s)	41, 87, 530, 756, 852, 1013
BfmI	CTRYAG	2 cut(s)	30, 812
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	2 cut(s)	183, 536
BlpI	GCTNAGC	2 cut(s)	686, 791
BlsI	GCNGC	2 cut(s)	184, 537
BmcAI	AGTACT	2 cut(s)	39, 1104
Bme1390I	CCNGG	1 cut(s)	1050
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	1050
BmsI	GCATC	3 cut(s)	99, 589, 715
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	2 cut(s)	479, 653
Bpu1102I	GCTNAGC	2 cut(s)	686, 791
BpuEI	CTTGAG	4 cut(s)	317, 608, 724, 869
BpuMI	CCSGG	1 cut(s)	1050
Bsa29I	ATCGAT	1 cut(s)	1126
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	906
BsaWI	WCCGGW	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 286, 708, 1138
Bse1I	ACTGG	2 cut(s)	301, 420
BseAI	TCCGGA	1 cut(s)	457
BseCI	ATCGAT	1 cut(s)	1126
BseDI	CCNNGG	1 cut(s)	906
BseGI	GGATG	2 cut(s)	90, 156
BseLI	CCNNNNNNNGG	4 cut(s)	285, 286, 708, 1138
BseMII	CTCAG	3 cut(s)	499, 616, 805
BseNI	ACTGG	2 cut(s)	301, 420
BseRI	GAGGAG	2 cut(s)	424, 721
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	101
BshVI	ATCGAT	1 cut(s)	1126
BsiHKAI	GWGCWC	1 cut(s)	949
BsiSI	CCGG	2 cut(s)	458, 1050
BslI	CCNNNNNNNGG	4 cut(s)	285, 286, 708, 1138
BsmAI	GTCTC	6 cut(s)	168, 244, 335, 486, 497, 932
BsmI	GAATGC	1 cut(s)	933
Bso31I	GGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	949
Bsp13I	TCCGGA	1 cut(s)	457
Bsp143I	GATC	6 cut(s)	342, 418, 444, 889, 1123, 1127
Bsp1720I	GCTNAGC	2 cut(s)	686, 791
Bsp19I	CCATGG	1 cut(s)	906
BspACI	CCGC	2 cut(s)	182, 535
BspCNI	CTCAG	3 cut(s)	498, 615, 804
BspDI	ATCGAT	1 cut(s)	1126
BspEI	TCCGGA	1 cut(s)	457
BspHI	TCATGA	2 cut(s)	201, 826
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	4 cut(s)	426, 897, 1122, 1131
BspTNI	GGTCTC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	535
BsrI	ACTGG	2 cut(s)	301, 420
BssECI	CCNNGG	1 cut(s)	906
BssMI	GATC	6 cut(s)	342, 418, 444, 889, 1123, 1127
BssT1I	CCWWGG	1 cut(s)	906
Bst4CI	ACNGT	4 cut(s)	135, 803, 1063, 1153
Bst6I	CTCTTC	2 cut(s)	561, 864
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	7 cut(s)	316, 485, 602, 686, 791, 893, 938
BstDSI	CCRYGG	1 cut(s)	906
BstEII	GGTNACC	1 cut(s)	767
BstENI	CCTNNNNNAGG	1 cut(s)	706
BstF5I	GGATG	2 cut(s)	90, 156
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	6 cut(s)	345, 421, 447, 892, 1126, 1130
BstMAI	GTCTC	6 cut(s)	168, 244, 335, 486, 497, 932
BstMBI	GATC	6 cut(s)	342, 418, 444, 889, 1123, 1127
BstNSI	RCATGY	1 cut(s)	525
BstPI	GGTNACC	1 cut(s)	767
BstSCI	CCNGG	1 cut(s)	1048
BstSFI	CTRYAG	2 cut(s)	30, 812
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	889
Bsu15I	ATCGAT	1 cut(s)	1126
BsuTUI	ATCGAT	1 cut(s)	1126
BtgI	CCRYGG	1 cut(s)	906
BtsCI	GGATG	2 cut(s)	90, 156
BtsIMutI	CAGTG	2 cut(s)	308, 1068
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	523
CciI	TCATGA	2 cut(s)	201, 826
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	120
ClaI	ATCGAT	1 cut(s)	1126
Csp6I	GTAC	3 cut(s)	38, 836, 1103
CspCI	CAANNNNNGTGG	2 cut(s)	982, 1017
CviAII	CATG	5 cut(s)	202, 230, 522, 827, 907
CviQI	GTAC	3 cut(s)	38, 836, 1103
DdeI	CTNAG	7 cut(s)	316, 485, 602, 686, 791, 893, 938
DpnI	GATC	6 cut(s)	344, 420, 446, 891, 1125, 1129
DpnII	GATC	6 cut(s)	342, 418, 444, 889, 1123, 1127
DraI	TTTAAA	2 cut(s)	349, 382
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	561, 864
EarI	CTCTTC	2 cut(s)	561, 864
Eco130I	CCWWGG	1 cut(s)	906
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	767
EcoNI	CCTNNNNNAGG	1 cut(s)	706
EcoO65I	GGTNACC	1 cut(s)	767
EcoRI	GAATTC	1 cut(s)	1007
EcoT14I	CCWWGG	1 cut(s)	906
EcoT22I	ATGCAT	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	906
FaeI	CATG	5 cut(s)	205, 233, 525, 830, 910
FatI	CATG	5 cut(s)	201, 229, 521, 826, 906
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	2 cut(s)	183, 536
FokI	GGATG	2 cut(s)	77, 143
Fsp4HI	GCNGC	2 cut(s)	183, 536
FspBI	CTAG	6 cut(s)	41, 87, 530, 756, 852, 1013
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	2 cut(s)	183, 536
GsaI	CCCAGC	1 cut(s)	324
GsuI	CTGGAG	2 cut(s)	479, 653
HapII	CCGG	2 cut(s)	458, 1050
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	5 cut(s)	205, 233, 525, 830, 910
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HinfI	GANTC	6 cut(s)	353, 474, 606, 902, 1053, 1097
HpaII	CCGG	2 cut(s)	458, 1050
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	3 cut(s)	357, 410, 694
Hpy188I	TCNGA	3 cut(s)	488, 605, 1041
Hpy188III	TCNNGA	6 cut(s)	202, 458, 560, 632, 827, 1139
Hpy8I	GTNNAC	3 cut(s)	357, 410, 694
HpyAV	CCTTC	2 cut(s)	687, 1055
HpyCH4III	ACNGT	4 cut(s)	135, 803, 1063, 1153
HpyCH4V	TGCA	6 cut(s)	32, 82, 525, 580, 668, 933
HpyF3I	CTNAG	7 cut(s)	316, 485, 602, 686, 791, 893, 938
Hsp92II	CATG	5 cut(s)	205, 233, 525, 830, 910
HspAI	GCGC	1 cut(s)	227
Kpn2I	TCCGGA	1 cut(s)	457
Kzo9I	GATC	6 cut(s)	342, 418, 444, 889, 1123, 1127
LmnI	GCTCC	3 cut(s)	281, 952, 995
LweI	GCATC	3 cut(s)	99, 589, 715
MaeI	CTAG	6 cut(s)	41, 87, 530, 756, 852, 1013
MaeIII	GTNAC	2 cut(s)	129, 767
MalI	GATC	6 cut(s)	344, 420, 446, 891, 1125, 1129
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	6 cut(s)	342, 418, 444, 889, 1123, 1127
MboII	GAAGA	5 cut(s)	17, 203, 548, 851, 1078
MflI	RGATCY	1 cut(s)	889
MhlI	GDGCHC	1 cut(s)	949
MluCI	AATT	7 cut(s)	207, 219, 311, 540, 647, 748, 1007
MlyI	GAGTC	3 cut(s)	362, 896, 1047
Mph1103I	ATGCAT	1 cut(s)	527
MroI	TCCGGA	1 cut(s)	457
MroXI	GAANNNNTTC	1 cut(s)	965
MseI	TTAA	6 cut(s)	258, 309, 348, 366, 381, 1080
MslI	CAYNNNNRTG	1 cut(s)	831
MspI	CCGG	2 cut(s)	458, 1050
MspR9I	CCNGG	1 cut(s)	1050
Mva1269I	GAATGC	1 cut(s)	933
NciI	CCSGG	1 cut(s)	1050
NcoI	CCATGG	1 cut(s)	906
NdeII	GATC	6 cut(s)	342, 418, 444, 889, 1123, 1127
NlaIII	CATG	5 cut(s)	205, 233, 525, 830, 910
NmuCI	GTSAC	2 cut(s)	129, 767
NsiI	ATGCAT	1 cut(s)	527
NspI	RCATGY	1 cut(s)	525
PaeI	GCATGC	1 cut(s)	525
PagI	TCATGA	2 cut(s)	201, 826
PctI	GAATGC	1 cut(s)	933
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	3 cut(s)	474, 606, 1097
PfoI	TCCNGGA	1 cut(s)	1048
PkrI	GCNGC	2 cut(s)	184, 537
PleI	GAGTC	3 cut(s)	361, 896, 1047
PpsI	GAGTC	3 cut(s)	361, 896, 1047
PspEI	GGTNACC	1 cut(s)	767
PspFI	CCCAGC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	889
RsaI	GTAC	3 cut(s)	39, 837, 1104
RsaNI	GTAC	3 cut(s)	38, 836, 1103
RseI	CAYNNNNRTG	1 cut(s)	831
SaqAI	TTAA	6 cut(s)	258, 309, 348, 366, 381, 1080
SatI	GCNGC	2 cut(s)	183, 536
Sau3AI	GATC	6 cut(s)	342, 418, 444, 889, 1123, 1127
Sau96I	GGNCC	1 cut(s)	120
ScaI	AGTACT	2 cut(s)	39, 1104
SchI	GAGTC	3 cut(s)	362, 896, 1047
ScrFI	CCNGG	1 cut(s)	1050
SduI	GDGCHC	1 cut(s)	949
SfaNI	GCATC	3 cut(s)	99, 589, 715
SfcI	CTRYAG	2 cut(s)	30, 812
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	4 cut(s)	332, 623, 703, 884
SmoI	CTYRAG	4 cut(s)	332, 623, 703, 884
SphI	GCATGC	1 cut(s)	525
Sse9I	AATT	7 cut(s)	207, 219, 311, 540, 647, 748, 1007
SsiI	CCGC	2 cut(s)	182, 535
SspMI	CTAG	6 cut(s)	41, 87, 530, 756, 852, 1013
StyD4I	CCNGG	1 cut(s)	1048
StyI	CCWWGG	1 cut(s)	906
TaaI	ACNGT	4 cut(s)	135, 803, 1063, 1153
TaqI	TCGA	2 cut(s)	98, 1126
TasI	AATT	7 cut(s)	207, 219, 311, 540, 647, 748, 1007
TatI	WGTACW	2 cut(s)	37, 1102
TauI	GCSGC	2 cut(s)	185, 538
TfiI	GAWTC	3 cut(s)	474, 606, 1097
Tru1I	TTAA	6 cut(s)	258, 309, 348, 366, 381, 1080
Tru9I	TTAA	6 cut(s)	258, 309, 348, 366, 381, 1080
TscAI	CASTG	2 cut(s)	308, 1068
TseFI	GTSAC	2 cut(s)	129, 767
Tsp45I	GTSAC	2 cut(s)	129, 767
TspDTI	ATGAA	5 cut(s)	187, 203, 843, 851, 1105
TspRI	CASTG	2 cut(s)	308, 1068
VpaK11BI	GGWCC	1 cut(s)	120
XagI	CCTNNNNNAGG	1 cut(s)	706
XapI	RAATTY	4 cut(s)	219, 311, 647, 1007
XceI	RCATGY	1 cut(s)	525
XmiI	GTMKAC	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	965
XspI	CTAG	6 cut(s)	41, 87, 530, 756, 852, 1013
ZrmI	AGTACT	2 cut(s)	39, 1104
Zsp2I	ATGCAT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.