RLG00000021436

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
75411573 .. 75412927
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021436

Sequence Viewer

Length: 321 bp
ATGGCAACCATGGTGGGAACTGGGAATGGTGGAGGTAAAGACAGAGGGTCGATTTCTCAAACTTACTCCACACCTGTTGAGGAATTTTTAGAAACACAATCTCAGTCATCTAATCTGAACCTTCCCGAACTCAAAACAGTGAACATAACAGCTGTTGATGGATTTGAATCTAATTCCGTACTTACAAAGTTTATAAAGGATCGGTCGGTCCCCCAATCTAGAACAAATGACTGTTCTACTTTATTGATGGCTCATATAATTAATCCTCGTAGCATTTCATGCTTCCACGTTTTGTTTGCACACAGTGGCGGTTTAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.38

Weight (kDa)

6.25

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AciI CCGC 1 cut(s) 309
AclWI GGATC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 83
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 1 cut(s) 180
AgsI TTSAA 1 cut(s) 167
AhdI GACNNNNNGTC 1 cut(s) 46
AluBI AGCT 2 cut(s) 152, 318
AluI AGCT 2 cut(s) 152, 318
AlwI GGATC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 83
AseI ATTAAT 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 208
AvaII GGWCC 1 cut(s) 208
BccI CCATC 2 cut(s) 152, 241
BfaI CTAG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 208
BmeRI GACNNNNNGTC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 9
BseJI GATNNNNATC 1 cut(s) 166
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 199
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 210
BspPI GGATC 1 cut(s) 207
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 3 cut(s) 139, 233, 305
BstAPI GCANNNNNTGC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 9
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMCI CGRYCG 1 cut(s) 206
BstMWI GCNNNNNNNGC 2 cut(s) 279, 315
BtgI CCRYGG 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 144, 310
Cfr13I GGNCC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 179
CspCI CAANNNNNGTGG 3 cut(s) 29, 58, 93
CviAII CATG 2 cut(s) 10, 279
CviJI RGCY 3 cut(s) 152, 251, 318
CviKI_1 RGCY 3 cut(s) 152, 251, 318
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
DraIII CACNNNGTG 1 cut(s) 305
DriI GACNNNNNGTC 1 cut(s) 46
Eam1105I GACNNNNNGTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 13, 282
FaiI YATR 6 cut(s) 11, 146, 194, 255, 257, 280
FaqI GGGAC 1 cut(s) 194
FatI CATG 2 cut(s) 9, 278
FspBI CTAG 1 cut(s) 219
Hin1II CATG 2 cut(s) 13, 282
HinfI GANTC 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 125, 219
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 3 cut(s) 139, 233, 305
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 279, 315
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 2 cut(s) 13, 282
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 2 cut(s) 6, 87
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 288
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MluCI AATT 3 cut(s) 83, 172, 258
MnlI CCTC 4 cut(s) 26, 38, 73, 276
MseI TTAA 2 cut(s) 261, 314
MspA1I CMGCKG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 279, 315
NcoI CCATGG 1 cut(s) 9
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 13, 282
NlaIV GGNNCC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 167
PshBI ATTAAT 1 cut(s) 261
PsiI TTATAA 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 261, 314
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 1 cut(s) 208
SetI ASST 6 cut(s) 37, 76, 123, 154, 291, 320
SgeI CNNG 8 cut(s) 22, 33, 86, 137, 231, 279, 291, 299
SinI GGWCC 1 cut(s) 208
Sse9I AATT 3 cut(s) 83, 172, 258
SsiI CCGC 1 cut(s) 309
SspMI CTAG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 3 cut(s) 139, 233, 305
TaiI ACGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 50
TaqII GACCGA 2 cut(s) 192, 196
TasI AATT 3 cut(s) 83, 172, 258
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 261, 314
Tru9I TTAA 2 cut(s) 261, 314
TscAI CASTG 2 cut(s) 144, 310
TspDTI ATGAA 1 cut(s) 267
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 2 cut(s) 144, 310
VpaK11BI GGWCC 1 cut(s) 208
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 1 cut(s) 83
XbaI TCTAGA 1 cut(s) 218
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.