Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0016904

Physical Location & Seq

Genomic Coordinates Forward (+)

5640660 .. 5643663

Gene Structure 3004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1069700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGTTGTGAAAGTGTTGAAGAGGAATACGAAAAGAATTGATCAGTCTTCTGGTGATGAGATTAGTGAGATGGCAAGTGTTACGAAAGAGGATAGAATTAGCAGTCTGCCTTGGGATGTATTGGACGGGATCCTTGTTCGCTTGCCTTTGAAAGAAGTTGTGAGGACTAGTATCTTATCCCGCAGGTGGAGGCATAAAAGGACTGGCATTTCACAGTTTGTTATTGATGACAAATGCATTCCAAGCCGGATATCAGACAAAGTTGCAAGATGGGAATCGATCATGGAAATTCTTTGTCAAGTTCAATTGCATCATACCGGTCCTATAGAAAAGTTTAAGCTTGCTGCTTATTGCCGGCCTGACCATTCTGATTTAGACCAGTGGATTCATTTTTTAGCTGACAAAGGTCTCAAGGAGTTCATCCTACAGGAGTTTGACACTATAAAACGTTTTAACTTGCCTTTTTGTCTATTCTCGTGTCCACTTTTGAATCGCTTGGAGCTTTTCGGTTGTAGAATCAAGCCATCTTCTGAAGCCATCGGATTCAAGAGCGTCGTGAACCTCCATCTCAATGAAGTTTGTGTAACTGGTGGCACGCTAGAATGTTTGGTTATAAATTCTCCGGTTCTTGAAAGATTGACACTGTTGAACATTGATCGTCAAATTGTTCTTAGAATTGGCAACACGAATCTCAAGTATCTGAAAGTAGGTTCCAACTTTGACGATATTTATCTTGAAAACAGTCCATCTCTTGCTTGTGTTGACATTGGCTTGAGGGCGAGGGTCGTACCGCGACTTTTTGGGTCCGAAGGAGGGAAGCTAATCAGGGTTATAGGCTGTCTACATGCTATCAAGAAACTGAGCCTATCCAGTGCCATCCTGGCGTTTCTGGGCAATAATGGCGTACCGGACAAACTTCCTACTCTGCTTCCACATCTGTCAGTTCTCGAACTCAGGGACGTACAGTTGGATTCTTTGACAGAAGTGTTGGTTTGCGTCTGCATTTTTCGAAGTGCTCCTAATTTAGAGGAACTACACCTTTCAGTTGCTAGTACAACTGAGTATTACAAACCTGCTGCTGACTTCCTCATCACTAAGTTGTCAAACCACTACTTCGAACAACTTAAAGTAGCGAAGATAAGAGCGGTACAAAATGTTCAAACTGAGACAATATTCATCCAGCTTTTACTCGCTCATTCGCCCGTGCTGAAAAGAATGACCATTGTACATTATGGAAGCAGAATTCTTCCAACAGAAGTGCTGGAGCAATCCGTGCCAGCTTCTAAAGATGTCGAAATTTTCAACTTATGCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

439

Amino Acids

49.44

Weight (kDa)

8.6

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	33 - 65	7e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	105 - 382	2.1e-16	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	125 - 346	1.2e-21	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016904)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45851
malus_domestica	MD09G1079300.v1.1 MD17G1069700.v1.1
prunus_persica	Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1
pyrus_communis	pycom09g00610 pycom17g06980
rosa_laevigata	RLG00000021436
rosa_rugosa	Rorug02G0506500
rosa_samantha	Rh2DG594900
rosa_wichuraiana	Rw2G047540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	614
AarI	CACCTGC	1 cut(s)	174
Acc36I	ACCTGC	2 cut(s)	174, 1081
AccBSI	CCGCTC	1 cut(s)	1145
AccI	GTMKAC	1 cut(s)	841
AccII	CGCG	1 cut(s)	793
AciI	CCGC	3 cut(s)	181, 791, 1145
AclI	AACGTT	1 cut(s)	448
AclWI	GGATC	2 cut(s)	124, 137
AcsI	RAATTY	4 cut(s)	288, 616, 1242, 1296
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	6 cut(s)	789, 906, 963, 1054, 1149, 1227
AfiI	CCNNNNNNNGG	2 cut(s)	186, 813
AgeI	ACCGGT	1 cut(s)	317
AhlI	ACTAGT	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	879
AluBI	AGCT	6 cut(s)	340, 398, 502, 820, 1183, 1280
AluI	AGCT	6 cut(s)	340, 398, 502, 820, 1183, 1280
Alw21I	GWGCWC	1 cut(s)	1018
Alw26I	GTCTC	2 cut(s)	413, 1160
AlwI	GGATC	2 cut(s)	124, 137
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	344, 1076
ApoI	RAATTY	4 cut(s)	288, 616, 1242, 1296
AsiGI	ACCGGT	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	320, 804
AsuHPI	GGTGA	1 cut(s)	65
AsuII	TTCGAA	2 cut(s)	1009, 1116
AvaII	GGWCC	2 cut(s)	320, 804
BamHI	GGATCC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	1018
BbvI	GCAGC	2 cut(s)	331, 1063
BccI	CCATC	7 cut(s)	64, 264, 532, 545, 573, 754, 884
BciT130I	CCWGG	1 cut(s)	881
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	413, 1160
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	3 cut(s)	168, 599, 1050
BfmI	CTRYAG	2 cut(s)	324, 425
BfuAI	ACCTGC	2 cut(s)	174, 1081
BglI	GCCNNNNNGGC	1 cut(s)	881
BisI	GCNGC	2 cut(s)	345, 1077
BlsI	GCNGC	2 cut(s)	346, 1078
Bme1390I	CCNGG	1 cut(s)	881
Bme18I	GGWCC	2 cut(s)	320, 804
BmgT120I	GGNCC	2 cut(s)	320, 804
BmiI	GGNNCC	3 cut(s)	131, 712, 805
BmrFI	CCNGG	1 cut(s)	881
BmsI	GCATC	1 cut(s)	319
BoxI	GACNNNNGTC	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	1283
Bpu14I	TTCGAA	2 cut(s)	1009, 1116
BpuEI	CTTGAG	3 cut(s)	395, 677, 793
Bsa29I	ATCGAT	1 cut(s)	278
BsaBI	GATNNNNATC	2 cut(s)	274, 729
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	110
BsaWI	WCCGGW	3 cut(s)	317, 622, 907
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 813
Bse118I	RCCGGY	2 cut(s)	317, 354
Bse1I	ACTGG	4 cut(s)	208, 379, 592, 870
Bse8I	GATNNNNATC	2 cut(s)	274, 729
BseBI	CCWGG	1 cut(s)	881
BseCI	ATCGAT	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	4 cut(s)	121, 420, 876, 1176
BseJI	GATNNNNATC	2 cut(s)	274, 729
BseLI	CCNNNNNNNGG	2 cut(s)	186, 813
BseMII	CTCAG	4 cut(s)	851, 967, 1050, 1155
BseNI	ACTGG	4 cut(s)	208, 379, 592, 870
BseXI	GCAGC	2 cut(s)	331, 1063
Bsh1236I	CGCG	1 cut(s)	793
BshFI	GGCC	1 cut(s)	358
BshTI	ACCGGT	1 cut(s)	317
BshVI	ATCGAT	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	1018
BsiSI	CCGG	5 cut(s)	247, 318, 355, 623, 908
BslFI	GGGAC	1 cut(s)	971
BslI	CCNNNNNNNGG	2 cut(s)	186, 813
BsmAI	GTCTC	2 cut(s)	413, 1160
BsmFI	GGGAC	1 cut(s)	971
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	358
Bso31I	GGTCTC	1 cut(s)	413
Bsp119I	TTCGAA	2 cut(s)	1009, 1116
Bsp1286I	GDGCHC	1 cut(s)	1018
Bsp1407I	TGTACA	1 cut(s)	1225
Bsp143I	GATC	4 cut(s)	40, 129, 279, 655
BspACI	CCGC	3 cut(s)	181, 791, 1145
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	4 cut(s)	852, 966, 1051, 1156
BspDI	ATCGAT	1 cut(s)	278
BspFNI	CGCG	1 cut(s)	793
BspLI	GGNNCC	3 cut(s)	131, 712, 805
BspMI	ACCTGC	2 cut(s)	174, 1081
BspPI	GGATC	2 cut(s)	124, 137
BspT104I	TTCGAA	2 cut(s)	1009, 1116
BspTNI	GGTCTC	1 cut(s)	413
BsrBI	CCGCTC	1 cut(s)	1145
BsrFI	RCCGGY	2 cut(s)	317, 354
BsrGI	TGTACA	1 cut(s)	1225
BsrI	ACTGG	4 cut(s)	208, 379, 592, 870
BssAI	RCCGGY	2 cut(s)	317, 354
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	4 cut(s)	40, 129, 279, 655
BssSI	CACGAG	1 cut(s)	475
BssT1I	CCWWGG	1 cut(s)	110
Bst2BI	CACGAG	1 cut(s)	475
Bst2UI	CCWGG	1 cut(s)	881
Bst4CI	ACNGT	4 cut(s)	216, 645, 743, 966
Bst6I	CTCTTC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	1273
BstAUI	TGTACA	1 cut(s)	1225
BstBI	TTCGAA	2 cut(s)	1009, 1116
BstC8I	GCNNGC	5 cut(s)	143, 342, 356, 596, 1278
BstDEI	CTNAG	6 cut(s)	671, 860, 953, 1059, 1095, 1164
BstF5I	GGATG	4 cut(s)	121, 420, 876, 1176
BstFNI	CGCG	1 cut(s)	793
BstKTI	GATC	4 cut(s)	43, 132, 282, 658
BstMAI	GTCTC	2 cut(s)	413, 1160
BstMBI	GATC	4 cut(s)	40, 129, 279, 655
BstMWI	GCNNNNNNNGC	4 cut(s)	243, 881, 900, 1273
BstNI	CCWGG	1 cut(s)	881
BstNSI	RCATGY	1 cut(s)	848
BstPAI	GACNNNNGTC	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	879
BstSFI	CTRYAG	2 cut(s)	324, 425
BstUI	CGCG	1 cut(s)	793
BstV1I	GCAGC	2 cut(s)	331, 1063
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
Bsu15I	ATCGAT	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	358
BsuTUI	ATCGAT	1 cut(s)	278
BtsCI	GGATG	4 cut(s)	121, 420, 876, 1176
BtsIMutI	CAGTG	3 cut(s)	386, 641, 877
BveI	ACCTGC	2 cut(s)	174, 1081
Cac8I	GCNNGC	5 cut(s)	143, 342, 356, 596, 1278
Cfr10I	RCCGGY	2 cut(s)	317, 354
Cfr13I	GGNCC	2 cut(s)	320, 804
ClaI	ATCGAT	1 cut(s)	278
CseI	GACGC	2 cut(s)	541, 985
Csp6I	GTAC	6 cut(s)	788, 905, 962, 1053, 1148, 1226
CspAI	ACCGGT	1 cut(s)	317
CviAII	CATG	2 cut(s)	283, 845
CviQI	GTAC	6 cut(s)	788, 905, 962, 1053, 1148, 1226
DdeI	CTNAG	6 cut(s)	671, 860, 953, 1059, 1095, 1164
DpnI	GATC	4 cut(s)	42, 131, 281, 657
DpnII	GATC	4 cut(s)	40, 129, 279, 655
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	413
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	320, 804
Eco57I	CTGAAG	1 cut(s)	552
EcoRI	GAATTC	1 cut(s)	1242
EcoRII	CCWGG	1 cut(s)	879
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	2 cut(s)	286, 848
FaqI	GGGAC	1 cut(s)	971
FatI	CATG	2 cut(s)	282, 844
FauI	CCCGC	1 cut(s)	188
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	841
Fnu4HI	GCNGC	2 cut(s)	345, 1077
FokI	GGATG	4 cut(s)	128, 407, 863, 1163
Fsp4HI	GCNGC	2 cut(s)	345, 1077
FspBI	CTAG	3 cut(s)	168, 599, 1050
GluI	GCNGC	2 cut(s)	345, 1077
GsuI	CTGGAG	1 cut(s)	1283
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	5 cut(s)	247, 318, 355, 623, 908
HgaI	GACGC	2 cut(s)	541, 985
Hin1II	CATG	2 cut(s)	286, 848
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	7 cut(s)	275, 385, 490, 516, 543, 688, 971
HpaII	CCGG	5 cut(s)	247, 318, 355, 623, 908
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	4 cut(s)	482, 559, 763, 842
Hpy188I	TCNGA	6 cut(s)	256, 370, 532, 542, 702, 808
Hpy188III	TCNNGA	6 cut(s)	547, 556, 629, 734, 853, 947
Hpy8I	GTNNAC	4 cut(s)	482, 559, 763, 842
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	1 cut(s)	803
HpyCH4III	ACNGT	4 cut(s)	216, 645, 743, 966
HpyCH4IV	ACGT	2 cut(s)	448, 960
HpyCH4V	TGCA	4 cut(s)	237, 266, 310, 1002
HpyF10VI	GCNNNNNNNGC	4 cut(s)	243, 881, 900, 1273
HpyF3I	CTNAG	6 cut(s)	671, 860, 953, 1059, 1095, 1164
HpySE526I	ACGT	2 cut(s)	448, 960
Hsp92II	CATG	2 cut(s)	286, 848
KroI	GCCGGC	1 cut(s)	354
KroNI	GCCGGC	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	40, 129, 279, 655
LmnI	GCTCC	3 cut(s)	499, 1021, 1264
Lsp1109I	GCAGC	2 cut(s)	331, 1063
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	3 cut(s)	168, 599, 1050
MaeII	ACGT	2 cut(s)	448, 960
MaeIII	GTNAC	2 cut(s)	79, 583
MalI	GATC	4 cut(s)	42, 131, 281, 657
MbiI	CCGCTC	1 cut(s)	1145
MboI	GATC	4 cut(s)	40, 129, 279, 655
MboII	GAAGA	5 cut(s)	31, 39, 519, 1147, 1238
MfeI	CAATTG	1 cut(s)	305
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	1018
MmeI	TCCRAC	3 cut(s)	738, 948, 1274
Mph1103I	ATGCAT	1 cut(s)	239
MroNI	GCCGGC	1 cut(s)	354
MseI	TTAA	3 cut(s)	336, 453, 1125
MslI	CAYNNNNRTG	1 cut(s)	570
MspI	CCGG	5 cut(s)	247, 318, 355, 623, 908
MspR9I	CCNGG	1 cut(s)	881
MunI	CAATTG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	881
MvnI	CGCG	1 cut(s)	793
MwoI	GCNNNNNNNGC	4 cut(s)	243, 881, 900, 1273
NaeI	GCCGGC	1 cut(s)	356
NdeII	GATC	4 cut(s)	40, 129, 279, 655
NgoMIV	GCCGGC	1 cut(s)	354
NlaIII	CATG	2 cut(s)	286, 848
NlaIV	GGNNCC	3 cut(s)	131, 712, 805
NsiI	ATGCAT	1 cut(s)	239
NspI	RCATGY	1 cut(s)	848
NspV	TTCGAA	2 cut(s)	1009, 1116
PaqCI	CACCTGC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	356
PfeI	GAWTC	7 cut(s)	275, 385, 490, 516, 543, 688, 971
PinAI	ACCGGT	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	346, 1078
PshAI	GACNNNNGTC	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	614
Psp1406I	AACGTT	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	879
PspGI	CCWGG	1 cut(s)	879
PspN4I	GGNNCC	3 cut(s)	131, 712, 805
PspPI	GGNCC	2 cut(s)	320, 804
PsrI	GAACNNNNNNTAC	2 cut(s)	1140, 1172
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	6 cut(s)	789, 906, 963, 1054, 1149, 1227
RsaNI	GTAC	6 cut(s)	788, 905, 962, 1053, 1148, 1226
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	3 cut(s)	336, 453, 1125
SatI	GCNGC	2 cut(s)	345, 1077
Sau3AI	GATC	4 cut(s)	40, 129, 279, 655
Sau96I	GGNCC	2 cut(s)	320, 804
ScrFI	CCNGG	1 cut(s)	881
SduI	GDGCHC	1 cut(s)	1018
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	2 cut(s)	324, 425
SfuI	TTCGAA	2 cut(s)	1009, 1116
SinI	GGWCC	2 cut(s)	320, 804
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	3 cut(s)	410, 692, 772
SmoI	CTYRAG	3 cut(s)	410, 692, 772
SpeI	ACTAGT	1 cut(s)	167
SsiI	CCGC	3 cut(s)	181, 791, 1145
SspI	AATATT	1 cut(s)	1173
SspMI	CTAG	3 cut(s)	168, 599, 1050
StyD4I	CCNGG	1 cut(s)	879
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	4 cut(s)	216, 645, 743, 966
TaiI	ACGT	2 cut(s)	451, 963
TaqI	TCGA	5 cut(s)	278, 948, 1009, 1116, 1293
TatI	WGTACW	2 cut(s)	1052, 1225
TfiI	GAWTC	7 cut(s)	275, 385, 490, 516, 543, 688, 971
Tru1I	TTAA	3 cut(s)	336, 453, 1125
Tru9I	TTAA	3 cut(s)	336, 453, 1125
TscAI	CASTG	3 cut(s)	386, 648, 877
TseI	GCWGC	2 cut(s)	344, 1076
TspDTI	ATGAA	4 cut(s)	377, 409, 588, 1165
TspGWI	ACGGA	1 cut(s)	1261
TspRI	CASTG	3 cut(s)	386, 648, 877
VpaK11BI	GGWCC	2 cut(s)	320, 804
XapI	RAATTY	4 cut(s)	288, 616, 1242, 1296
XceI	RCATGY	1 cut(s)	848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	877
XmiI	GTMKAC	1 cut(s)	841
XspI	CTAG	3 cut(s)	168, 599, 1050
Zsp2I	ATGCAT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.