MD09G1079300.v1.1

F-box FBD LRR-repeat protein At1g13570-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
5567779 .. 5569562
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1079300.v1.1.491

Sequence Viewer

Length: 1353 bp
ATGCCAGCTTCCAACTGCAGTTATGGTCTGAGAGAGCTGCTTGGGAAAGTATTGAAGAGGAATACAAAAAGAATTGATCAGTCTTCTGGTAATGAGATTACTGAGATGGAAAGCGTTACAAAAAAAGATAGAATTAGCAATCTGCCTTGGGATGTATTGGACGGGATCCTCGTTCGCTTGCCTTTGAAAGAAGTTGTGAGGACTAGCATCTTATCTAGCAGGTGGAGACATAAATGGACTGGCATTTCACAGTTTGTTATTGATGACAAATGCATACCACGCCGGATATCAGACAAAGTCGCAAGATGGGAATCGATCATGGAAATTCTTCATCAAGTTCAATTGCATCACACCGGTCCTATAGAAAAGTTTAAGCTCGCTGCTTATTGCCGGCCAGACCATTCTGATTTAGACCAGTGGATTCATTATTTAACTGACAAAGGTCTCAAGGAGTTCATCCTGCAGGAGTTTGATACTATAAAACGTTTTAACTTGCCTTTTTGTCTATTCTCATGTCCACTTTTGAATCGCTTGGAGCTTTTCGGTTGTAGAATCAAGCCATCTTCTGAAGCTATCGGATTCAAGAGCCTTGCGAACCTCCATCTTAATGAAGTTTGTGTAACTGGTGGCATGCTAGAATGTTTGGTTCTAAACTCCCCGGTTCTTGAAAGATTGACACTGTTAAACATTGATCATCAAATTGTTCTTAGAATTGGCAACGCGAATCTCAAGTATCTGAAAGTAGATTCCAACTTTGGCGACATATATCTTGAAAATAGTCCATCTCTGGCTAGCGTTGACATTGGCTTGAGGGTGAGGGTCATACCGCTATATTTTGGGTCCGAAGAAGGGAATCTAAACAGGGTTATAGGCTGTCTACATGCTATCAAGAAAATGACCCTATCCAGTGCCATGCTAGCGTTTCTGGGCAATAATGACATACCAGACAAACTTCCTACTCTGCTTCGGCATCTGTCAGTTCTCGAACTCAAGGACGTACGGTTGGATTCTTTGATAGAAGTGTTGGTTTGTGTCTGCATTTTTCGAAGTGCTCCAAATTTAGAGGAACTACACCTTTCAGTTGCTGATACAACTGAGTATTCCAGACCTGCTGCTGACTTCCTCATCACTAAGTTGTCAAACCATTACTTCGAAAAACTTAAAGTAGCGAAGATAAGAGCGGTACAAAATGTTCAAAATGAGACGATATTCATCCAGCTCTTACTCGCTCATTCGCCCCTGCTGAAAAGAATGACCATTGTACATTATGGAAGCAGATTTCTTCCAACAGAAGCGCTGGAGCAATCTGTGCCGGCTTCAAAGGATGTTGAAATCTTCAACTTATGCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

451

Amino Acids

51.18

Weight (kDa)

8.37

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 45 - 80 2.8e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 117 - 394 1.5e-17 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 137 - 358 4.8e-20 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 210
Acc36I ACCTGC 2 cut(s) 210, 1117
AccBSI CCGCTC 1 cut(s) 1181
AccI GTMKAC 1 cut(s) 877
AccII CGCG 1 cut(s) 722
AciI CCGC 2 cut(s) 827, 1181
AclI AACGTT 1 cut(s) 484
AclWI GGATC 2 cut(s) 160, 173
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 2 cut(s) 324, 1057
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 3 cut(s) 999, 1185, 1263
AfeI AGCGCT 1 cut(s) 1296
AfiI CCNNNNNNNGG 1 cut(s) 849
AgeI ACCGGT 1 cut(s) 353
AluBI AGCT 6 cut(s) 8, 37, 376, 538, 572, 1219
AluI AGCT 6 cut(s) 8, 37, 376, 538, 572, 1219
Alw21I GWGCWC 1 cut(s) 1054
Alw26I GTCTC 3 cut(s) 220, 449, 1196
AlwI GGATC 2 cut(s) 160, 173
AlwNI CAGNNNCTG 1 cut(s) 1085
Aor51HI AGCGCT 1 cut(s) 1296
AoxI GGCC 1 cut(s) 392
ApeKI GCWGC 3 cut(s) 37, 380, 1112
ApoI RAATTY 2 cut(s) 324, 1057
AsiGI ACCGGT 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 1 cut(s) 1297
AspS9I GGNCC 2 cut(s) 356, 840
AsuC2I CCSGG 1 cut(s) 659
AsuHPI GGTGA 1 cut(s) 826
AsuII TTCGAA 2 cut(s) 1045, 1152
AsuNHI GCTAGC 2 cut(s) 791, 916
AvaII GGWCC 2 cut(s) 356, 840
BamHI GGATCC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 1054
BbvI GCAGC 3 cut(s) 24, 367, 1099
BccI CCATC 5 cut(s) 100, 300, 568, 609, 790
BclI TGATCA 2 cut(s) 76, 691
BcnI CCSGG 1 cut(s) 659
BcoDI GTCTC 3 cut(s) 220, 449, 1196
BfaI CTAG 5 cut(s) 204, 216, 635, 792, 917
BfmI CTRYAG 3 cut(s) 16, 360, 461
BfoI RGCGCY 1 cut(s) 1298
BfuAI ACCTGC 2 cut(s) 210, 1117
BisI GCNGC 3 cut(s) 38, 381, 1113
BlsI GCNGC 3 cut(s) 39, 382, 1114
Bme1390I CCNGG 1 cut(s) 659
Bme18I GGWCC 2 cut(s) 356, 840
BmgT120I GGNCC 2 cut(s) 356, 840
BmiI GGNNCC 2 cut(s) 167, 841
BmrFI CCNGG 1 cut(s) 659
BmsI GCATC 3 cut(s) 216, 355, 979
BmtI GCTAGC 2 cut(s) 795, 920
BoxI GACNNNNGTC 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 1319
Bpu14I TTCGAA 2 cut(s) 1045, 1152
BpuEI CTTGAG 4 cut(s) 431, 713, 829, 974
BpuMI CCSGG 1 cut(s) 659
Bsa29I ATCGAT 1 cut(s) 314
BsaBI GATNNNNATC 2 cut(s) 310, 1211
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 146, 657
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 849
Bse118I RCCGGY 3 cut(s) 353, 390, 1312
Bse1I ACTGG 4 cut(s) 244, 415, 628, 906
Bse8I GATNNNNATC 2 cut(s) 310, 1211
BseCI ATCGAT 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 146, 657
BseGI GGATG 4 cut(s) 157, 456, 1212, 1330
BseJI GATNNNNATC 2 cut(s) 310, 1211
BseLI CCNNNNNNNGG 1 cut(s) 849
BseMII CTCAG 3 cut(s) 20, 93, 1086
BseNI ACTGG 4 cut(s) 244, 415, 628, 906
BseXI GCAGC 3 cut(s) 24, 367, 1099
Bsh1236I CGCG 1 cut(s) 722
BshFI GGCC 1 cut(s) 394
BshTI ACCGGT 1 cut(s) 353
BshVI ATCGAT 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 1054
BsiSI CCGG 5 cut(s) 283, 354, 391, 659, 1313
BsiWI CGTACG 1 cut(s) 997
BslI CCNNNNNNNGG 1 cut(s) 849
BsmAI GTCTC 3 cut(s) 220, 449, 1196
BsmBI CGTCTC 1 cut(s) 1196
BsnI GGCC 1 cut(s) 394
Bso31I GGTCTC 1 cut(s) 449
Bsp119I TTCGAA 2 cut(s) 1045, 1152
Bsp1286I GDGCHC 1 cut(s) 1054
Bsp1407I TGTACA 1 cut(s) 1261
Bsp143I GATC 4 cut(s) 76, 165, 315, 691
BspACI CCGC 2 cut(s) 827, 1181
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 3 cut(s) 21, 94, 1087
BspDI ATCGAT 1 cut(s) 314
BspFNI CGCG 1 cut(s) 722
BspLI GGNNCC 2 cut(s) 167, 841
BspMAI CTGCAG 2 cut(s) 20, 465
BspMI ACCTGC 2 cut(s) 210, 1117
BspOI GCTAGC 2 cut(s) 795, 920
BspPI GGATC 2 cut(s) 160, 173
BspT104I TTCGAA 2 cut(s) 1045, 1152
BspTNI GGTCTC 1 cut(s) 449
BsrBI CCGCTC 1 cut(s) 1181
BsrFI RCCGGY 3 cut(s) 353, 390, 1312
BsrGI TGTACA 1 cut(s) 1261
BsrI ACTGG 4 cut(s) 244, 415, 628, 906
BssAI RCCGGY 3 cut(s) 353, 390, 1312
BssECI CCNNGG 2 cut(s) 146, 657
BssMI GATC 4 cut(s) 76, 165, 315, 691
BssT1I CCWWGG 1 cut(s) 146
Bst4CI ACNGT 3 cut(s) 252, 681, 1002
Bst6I CTCTTC 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 1309
BstAUI TGTACA 1 cut(s) 1261
BstBI TTCGAA 2 cut(s) 1045, 1152
BstC8I GCNNGC 8 cut(s) 6, 179, 378, 392, 632, 793, 918, 1314
BstDEI CTNAG 5 cut(s) 29, 102, 707, 1095, 1131
BstF5I GGATG 4 cut(s) 157, 456, 1212, 1330
BstFNI CGCG 1 cut(s) 722
BstH2I RGCGCY 1 cut(s) 1298
BstHHI GCGC 1 cut(s) 1297
BstKTI GATC 4 cut(s) 79, 168, 318, 694
BstMAI GTCTC 3 cut(s) 220, 449, 1196
BstMBI GATC 4 cut(s) 76, 165, 315, 691
BstMWI GCNNNNNNNGC 3 cut(s) 279, 917, 1309
BstNSI RCATGY 2 cut(s) 634, 884
BstPAI GACNNNNGTC 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 3 cut(s) 16, 360, 461
BstUI CGCG 1 cut(s) 722
BstV1I GCAGC 3 cut(s) 24, 367, 1099
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 314
BsuRI GGCC 1 cut(s) 394
BsuTUI ATCGAT 1 cut(s) 314
BtsCI GGATG 4 cut(s) 157, 456, 1212, 1330
BtsIMutI CAGTG 3 cut(s) 422, 677, 913
BveI ACCTGC 2 cut(s) 210, 1117
Cac8I GCNNGC 8 cut(s) 6, 179, 378, 392, 632, 793, 918, 1314
CaiI CAGNNNCTG 1 cut(s) 1085
CfoI GCGC 1 cut(s) 1297
Cfr10I RCCGGY 3 cut(s) 353, 390, 1312
Cfr13I GGNCC 2 cut(s) 356, 840
ClaI ATCGAT 1 cut(s) 314
Csp6I GTAC 3 cut(s) 998, 1184, 1262
CspAI ACCGGT 1 cut(s) 353
CviAII CATG 5 cut(s) 319, 513, 631, 881, 913
CviQI GTAC 3 cut(s) 998, 1184, 1262
DdeI CTNAG 5 cut(s) 29, 102, 707, 1095, 1131
DpnI GATC 4 cut(s) 78, 167, 317, 693
DpnII GATC 4 cut(s) 76, 165, 315, 691
EaeI YGGCCR 1 cut(s) 392
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 449
Eco32I GATATC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 356, 840
Eco47III AGCGCT 1 cut(s) 1296
Eco57I CTGAAG 1 cut(s) 588
EcoRV GATATC 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 1196
FaeI CATG 5 cut(s) 322, 516, 634, 884, 916
FatI CATG 5 cut(s) 318, 512, 630, 880, 912
FbaI TGATCA 2 cut(s) 76, 691
FblI GTMKAC 1 cut(s) 877
Fnu4HI GCNGC 3 cut(s) 38, 381, 1113
FokI GGATG 4 cut(s) 164, 443, 1199, 1337
Fsp4HI GCNGC 3 cut(s) 38, 381, 1113
FspBI CTAG 5 cut(s) 204, 216, 635, 792, 917
GlaI GCGC 1 cut(s) 1296
GluI GCNGC 3 cut(s) 38, 381, 1113
GsuI CTGGAG 1 cut(s) 1319
HaeII RGCGCY 1 cut(s) 1298
HaeIII GGCC 1 cut(s) 394
HapII CCGG 5 cut(s) 283, 354, 391, 659, 1313
HhaI GCGC 1 cut(s) 1297
Hin1II CATG 5 cut(s) 322, 516, 634, 884, 916
Hin6I GCGC 1 cut(s) 1295
HinP1I GCGC 1 cut(s) 1295
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HinfI GANTC 9 cut(s) 311, 421, 526, 552, 579, 724, 746, 853, 1007
HpaII CCGG 5 cut(s) 283, 354, 391, 659, 1313
HphI GGTGA 1 cut(s) 826
Hpy166II GTNNAC 3 cut(s) 518, 799, 878
Hpy188I TCNGA 7 cut(s) 30, 292, 406, 568, 578, 738, 844
Hpy188III TCNNGA 6 cut(s) 583, 665, 770, 889, 983, 1104
Hpy8I GTNNAC 3 cut(s) 518, 799, 878
HpyAV CCTTC 1 cut(s) 842
HpyCH4III ACNGT 3 cut(s) 252, 681, 1002
HpyCH4IV ACGT 2 cut(s) 484, 996
HpyCH4V TGCA 5 cut(s) 18, 273, 346, 463, 1038
HpyF10VI GCNNNNNNNGC 3 cut(s) 279, 917, 1309
HpyF3I CTNAG 5 cut(s) 29, 102, 707, 1095, 1131
HpySE526I ACGT 2 cut(s) 484, 996
Hsp92II CATG 5 cut(s) 322, 516, 634, 884, 916
HspAI GCGC 1 cut(s) 1295
KroI GCCGGC 2 cut(s) 390, 1312
KroNI GCCGGC 2 cut(s) 392, 1314
Ksp22I TGATCA 2 cut(s) 76, 691
Kzo9I GATC 4 cut(s) 76, 165, 315, 691
LmnI GCTCC 3 cut(s) 535, 1057, 1300
Lsp1109I GCAGC 3 cut(s) 24, 367, 1099
LweI GCATC 3 cut(s) 216, 355, 979
MaeI CTAG 5 cut(s) 204, 216, 635, 792, 917
MaeII ACGT 2 cut(s) 484, 996
MaeIII GTNAC 2 cut(s) 115, 619
MalI GATC 4 cut(s) 78, 167, 317, 693
MbiI CCGCTC 1 cut(s) 1181
MboI GATC 4 cut(s) 76, 165, 315, 691
MboII GAAGA 8 cut(s) 67, 75, 320, 555, 857, 1183, 1274, 1327
MfeI CAATTG 1 cut(s) 341
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 1054
MluCI AATT 7 cut(s) 72, 132, 324, 341, 699, 711, 1057
MmeI TCCRAC 4 cut(s) 36, 774, 984, 1310
MnlI CCTC 8 cut(s) 51, 179, 192, 608, 804, 810, 1057, 1133
Mph1103I ATGCAT 1 cut(s) 275
MroNI GCCGGC 2 cut(s) 390, 1312
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 6 cut(s) 372, 431, 489, 606, 683, 1161
MslI CAYNNNNRTG 1 cut(s) 606
MspI CCGG 5 cut(s) 283, 354, 391, 659, 1313
MspR9I CCNGG 1 cut(s) 659
MunI CAATTG 1 cut(s) 341
MvnI CGCG 1 cut(s) 722
MwoI GCNNNNNNNGC 3 cut(s) 279, 917, 1309
NaeI GCCGGC 2 cut(s) 392, 1314
NciI CCSGG 1 cut(s) 659
NdeII GATC 4 cut(s) 76, 165, 315, 691
NgoMIV GCCGGC 2 cut(s) 390, 1312
NheI GCTAGC 2 cut(s) 791, 916
NlaIII CATG 5 cut(s) 322, 516, 634, 884, 916
NlaIV GGNNCC 2 cut(s) 167, 841
NsiI ATGCAT 1 cut(s) 275
NspI RCATGY 2 cut(s) 634, 884
NspV TTCGAA 2 cut(s) 1045, 1152
PaeI GCATGC 1 cut(s) 634
PaqCI CACCTGC 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdiI GCCGGC 2 cut(s) 392, 1314
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 9 cut(s) 311, 421, 526, 552, 579, 724, 746, 853, 1007
Pfl23II CGTACG 1 cut(s) 997
PflFI GACNNNGTC 1 cut(s) 296
PinAI ACCGGT 1 cut(s) 353
PkrI GCNGC 3 cut(s) 39, 382, 1114
PshAI GACNNNNGTC 1 cut(s) 441
Psp1406I AACGTT 1 cut(s) 484
PspLI CGTACG 1 cut(s) 997
PspN4I GGNNCC 2 cut(s) 167, 841
PspPI GGNCC 2 cut(s) 356, 840
PsrI GAACNNNNNNTAC 2 cut(s) 1176, 1208
PstI CTGCAG 2 cut(s) 20, 465
PstNI CAGNNNCTG 1 cut(s) 1085
PsuI RGATCY 1 cut(s) 165
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 3 cut(s) 999, 1185, 1263
RsaNI GTAC 3 cut(s) 998, 1184, 1262
RseI CAYNNNNRTG 1 cut(s) 606
SaqAI TTAA 6 cut(s) 372, 431, 489, 606, 683, 1161
SatI GCNGC 3 cut(s) 38, 381, 1113
Sau3AI GATC 4 cut(s) 76, 165, 315, 691
Sau96I GGNCC 2 cut(s) 356, 840
SbfI CCTGCAGG 1 cut(s) 465
ScrFI CCNGG 1 cut(s) 659
SdaI CCTGCAGG 1 cut(s) 465
SduI GDGCHC 1 cut(s) 1054
SfaNI GCATC 3 cut(s) 216, 355, 979
SfcI CTRYAG 3 cut(s) 16, 360, 461
SfuI TTCGAA 2 cut(s) 1045, 1152
SinI GGWCC 2 cut(s) 356, 840
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 4 cut(s) 446, 728, 808, 989
SmoI CTYRAG 4 cut(s) 446, 728, 808, 989
SphI GCATGC 1 cut(s) 634
Sse8387I CCTGCAGG 1 cut(s) 465
Sse9I AATT 7 cut(s) 72, 132, 324, 341, 699, 711, 1057
SsiI CCGC 2 cut(s) 827, 1181
SspMI CTAG 5 cut(s) 204, 216, 635, 792, 917
StyD4I CCNGG 1 cut(s) 657
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 3 cut(s) 252, 681, 1002
TaiI ACGT 2 cut(s) 487, 999
TaqI TCGA 4 cut(s) 314, 984, 1045, 1152
TasI AATT 7 cut(s) 72, 132, 324, 341, 699, 711, 1057
TatI WGTACW 1 cut(s) 1261
TfiI GAWTC 9 cut(s) 311, 421, 526, 552, 579, 724, 746, 853, 1007
Tru1I TTAA 6 cut(s) 372, 431, 489, 606, 683, 1161
Tru9I TTAA 6 cut(s) 372, 431, 489, 606, 683, 1161
TscAI CASTG 3 cut(s) 422, 684, 913
TseI GCWGC 3 cut(s) 37, 380, 1112
TspDTI ATGAA 5 cut(s) 320, 413, 445, 624, 1201
TspRI CASTG 3 cut(s) 422, 684, 913
Tth111I GACNNNGTC 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 356, 840
XapI RAATTY 2 cut(s) 324, 1057
XceI RCATGY 2 cut(s) 634, 884
XmiI GTMKAC 1 cut(s) 877
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 5 cut(s) 204, 216, 635, 792, 917
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.