Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016904

Physical Location & Seq

Genomic Coordinates Reverse (-)

23678968 .. 23682016

Gene Structure 3049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G245000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGAACGCATAAGAATAGAGATAGGATCAGCTATCTGCCTTGGGATGTATTGGACAACATCCTCGTTCGCTTGGATTTAAAAGAAGTTGTGAGGACTAGTATCTTATCCAGTAACTGGAGACATAAATGGACTGGCATTTCACAGTTTGTTCTTCATGACAAATGCATACCGAAACGGATATCGGACAAGGTGGCAAGATGGGGATCCATTATGGAAATCATCCATCAAGTTCAGTTATGTCACGACGGTGCTATAGAGAAGTTTAAGCTTGCTGCTTATTGCCGGCCAGACCATTCTGATTTAGACCAGTGGATTCGTTTTTTAACAGGCAAAGGCCTCAAGGAGCTGATCCTGCAGGAGTTTGACTCTGTAAAACGTTTCAACTTGCCTTTTTGTCTGTTCTCTAGTCCACTGCTGAACCGGTTGGAGCTTTTTGGTTGTAGATTCAAGCCACCTTCTGCAGTCATTGAATTTAGGAGTCTCACAACCCTCCAGCTCAATCGAGTTTGTATAAGTGATCGCATGCTAGAGTGTTTAGTTAGCAATTCCCCTGTTCTTGAAAGATTGATTTTGTTGGATATTGATCATCAAATTGTTCTTCGAATCCGCAACCCGAATCTCAAGTATCTGAGAGTAGATTCCAACTTTGATGATATATGTCTTGAGCACAGTCCATTACTGGCTACTGTTGACATTGGCTTGAGGGTTGGGGTCACACCCCAATTCTTCGATTCTGGAGGAGGCCAGTTGGTCAGGATTATTGGCCGTCTACATGCTCTTAGGAAACTTACCCTATCCAGTGCCTTCCTGAGGTTTCTGGGTAATATTAGCGTACCAGACAGACTTCCTACTATGCTTCAACATCTGTCAGTTTTTGAACTCAAGGATGTAAGGTTGGATAGTATGACAGAAGTGATGGTTTGCCTCTGCATTTTTAGAAGCGCTCCAAACTTAGAGAAACTGCTCCTTTCAGTTGCTGGTACAACTGCATATTCCAGACCTAGCGTGGAATTTCTCATCTCACAGTCTTTGTCAAATCTCTACTTTGAACAACTTAAAGAAGTATCTATAAGAGCTGTACAAGGCGTTATACCTGAGTTGATATTGATTCAGTTTTTACTGGCTCGATCGCCTGTGCTAAAAAAAATGACTATAGTGCATTATGGAAGTGAAAGGCTACCTGGAGAATCGTTGCAGCAATTTGTGCCAGCTTCAAAAGATGTGAAAATTTTCAACTTATCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

417

Amino Acids

47.58

Weight (kDa)

9.13

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016904)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45851
malus_domestica	MD09G1079300.v1.1 MD17G1069700.v1.1
prunus_persica	Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1
pyrus_communis	pycom09g00610 pycom17g06980
rosa_laevigata	RLG00000021436
rosa_rugosa	Rorug02G0506500
rosa_samantha	Rh2DG594900
rosa_wichuraiana	Rw2G047540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	772
AciI	CCGC	1 cut(s)	610
AclI	AACGTT	1 cut(s)	379
AclWI	GGATC	4 cut(s)	35, 201, 214, 346
AcoI	YGGCCR	2 cut(s)	287, 766
AcsI	RAATTY	3 cut(s)	473, 1013, 1230
AfaI	GTAC	3 cut(s)	837, 985, 1083
AfeI	AGCGCT	1 cut(s)	946
AfiI	CCNNNNNNNGG	2 cut(s)	117, 813
AgeI	ACCGGT	1 cut(s)	423
AgsI	TTSAA	9 cut(s)	385, 451, 473, 563, 863, 881, 1052, 1218, 1237
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	1183
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	7 cut(s)	33, 271, 349, 433, 499, 1079, 1214
AluI	AGCT	7 cut(s)	33, 271, 349, 433, 499, 1079, 1214
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	2 cut(s)	115, 488
AlwI	GGATC	4 cut(s)	35, 201, 214, 346
AlwNI	CAGNNNCTG	2 cut(s)	117, 980
Aor51HI	AGCGCT	1 cut(s)	946
AoxI	GGCC	4 cut(s)	287, 337, 745, 766
ApeKI	GCWGC	2 cut(s)	275, 1198
ApoI	RAATTY	3 cut(s)	473, 1013, 1230
AsiGI	ACCGGT	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	1232
AspLEI	GCGC	1 cut(s)	947
AsuII	TTCGAA	1 cut(s)	604
AxyI	CCTNAGG	1 cut(s)	812
BamHI	GGATCC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	2 cut(s)	262, 1210
BccI	CCATC	3 cut(s)	195, 234, 913
BceAI	ACGGC	1 cut(s)	753
BciT130I	CCWGG	1 cut(s)	1185
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	2 cut(s)	115, 488
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	4 cut(s)	99, 408, 530, 1005
BfmI	CTRYAG	4 cut(s)	255, 356, 462, 1155
BfoI	RGCGCY	1 cut(s)	948
BisI	GCNGC	2 cut(s)	276, 1199
BlsI	GCNGC	2 cut(s)	277, 1200
Bme1390I	CCNGG	1 cut(s)	1185
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	1185
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpmI	CTGGAG	4 cut(s)	139, 479, 759, 1206
Bpu14I	TTCGAA	1 cut(s)	604
BpuEI	CTTGAG	5 cut(s)	326, 608, 686, 724, 869
BsaBI	GATNNNNATC	2 cut(s)	205, 585
BsaJI	CCNNGG	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 813
Bse118I	RCCGGY	2 cut(s)	285, 423
Bse1I	ACTGG	8 cut(s)	111, 122, 139, 310, 687, 748, 801, 1128
Bse21I	CCTNAGG	1 cut(s)	812
Bse8I	GATNNNNATC	2 cut(s)	205, 585
BseBI	CCWGG	1 cut(s)	1185
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	4 cut(s)	52, 60, 222, 895
BseJI	GATNNNNATC	2 cut(s)	205, 585
BseLI	CCNNNNNNNGG	2 cut(s)	117, 813
BseMII	CTCAG	3 cut(s)	623, 803, 1089
BseNI	ACTGG	8 cut(s)	111, 122, 139, 310, 687, 748, 801, 1128
BseRI	GAGGAG	1 cut(s)	756
BseXI	GCAGC	2 cut(s)	262, 1210
Bsh1285I	CGRYCG	1 cut(s)	1133
BshFI	GGCC	4 cut(s)	289, 339, 747, 768
BshTI	ACCGGT	1 cut(s)	423
BsiEI	CGRYCG	1 cut(s)	1133
BsiHKAI	GWGCWC	1 cut(s)	672
BsiSI	CCGG	2 cut(s)	286, 424
BslI	CCNNNNNNNGG	2 cut(s)	117, 813
BsmAI	GTCTC	2 cut(s)	115, 488
BsnI	GGCC	4 cut(s)	289, 339, 747, 768
Bsp119I	TTCGAA	1 cut(s)	604
Bsp1286I	GDGCHC	1 cut(s)	672
Bsp1407I	TGTACA	1 cut(s)	1081
Bsp143I	GATC	6 cut(s)	27, 206, 351, 520, 586, 1130
BspACI	CCGC	1 cut(s)	610
BspANI	GGCC	4 cut(s)	289, 339, 747, 768
BspCNI	CTCAG	3 cut(s)	624, 804, 1090
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	208
BspMAI	CTGCAG	2 cut(s)	360, 466
BspPI	GGATC	4 cut(s)	35, 201, 214, 346
BspT104I	TTCGAA	1 cut(s)	604
BsrFI	RCCGGY	2 cut(s)	285, 423
BsrGI	TGTACA	1 cut(s)	1081
BsrI	ACTGG	8 cut(s)	111, 122, 139, 310, 687, 748, 801, 1128
BssAI	RCCGGY	2 cut(s)	285, 423
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	6 cut(s)	27, 206, 351, 520, 586, 1130
BssT1I	CCWWGG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	1185
Bst4CI	ACNGT	5 cut(s)	147, 251, 674, 691, 1029
BstAPI	GCANNNNNTGC	1 cut(s)	1207
BstAUI	TGTACA	1 cut(s)	1081
BstBI	TTCGAA	1 cut(s)	604
BstC8I	GCNNGC	4 cut(s)	273, 287, 527, 1212
BstDEI	CTNAG	5 cut(s)	632, 782, 812, 955, 1098
BstENI	CCTNNNNNAGG	1 cut(s)	811
BstF5I	GGATG	4 cut(s)	52, 60, 222, 895
BstH2I	RGCGCY	1 cut(s)	948
BstHHI	GCGC	1 cut(s)	947
BstKTI	GATC	6 cut(s)	30, 209, 354, 523, 589, 1133
BstMAI	GTCTC	2 cut(s)	115, 488
BstMBI	GATC	6 cut(s)	27, 206, 351, 520, 586, 1130
BstMCI	CGRYCG	1 cut(s)	1133
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 1207
BstNI	CCWGG	1 cut(s)	1185
BstNSI	RCATGY	2 cut(s)	529, 779
BstSCI	CCNGG	1 cut(s)	1183
BstSFI	CTRYAG	4 cut(s)	255, 356, 462, 1155
BstV1I	GCAGC	2 cut(s)	262, 1210
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
Bsu36I	CCTNAGG	1 cut(s)	812
BsuRI	GGCC	4 cut(s)	289, 339, 747, 768
BtsCI	GGATG	4 cut(s)	52, 60, 222, 895
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	3 cut(s)	317, 413, 808
Cac8I	GCNNGC	4 cut(s)	273, 287, 527, 1212
CaiI	CAGNNNCTG	2 cut(s)	117, 980
CciI	TCATGA	1 cut(s)	157
CfoI	GCGC	1 cut(s)	947
Cfr10I	RCCGGY	2 cut(s)	285, 423
Csp6I	GTAC	3 cut(s)	836, 984, 1082
CspAI	ACCGGT	1 cut(s)	423
CviAII	CATG	3 cut(s)	158, 526, 776
CviQI	GTAC	3 cut(s)	836, 984, 1082
DdeI	CTNAG	5 cut(s)	632, 782, 812, 955, 1098
DpnI	GATC	6 cut(s)	29, 208, 353, 522, 588, 1132
DpnII	GATC	6 cut(s)	27, 206, 351, 520, 586, 1130
DraI	TTTAAA	1 cut(s)	81
EaeI	YGGCCR	2 cut(s)	287, 766
Eco130I	CCWWGG	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	183
Eco47III	AGCGCT	1 cut(s)	946
Eco81I	CCTNAGG	1 cut(s)	812
EcoNI	CCTNNNNNAGG	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	1183
EcoRV	GATATC	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	3 cut(s)	161, 529, 779
FatI	CATG	3 cut(s)	157, 525, 775
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	772
Fnu4HI	GCNGC	2 cut(s)	276, 1199
FokI	GGATG	4 cut(s)	47, 59, 209, 902
Fsp4HI	GCNGC	2 cut(s)	276, 1199
FspBI	CTAG	4 cut(s)	99, 408, 530, 1005
GlaI	GCGC	1 cut(s)	946
GluI	GCNGC	2 cut(s)	276, 1199
GsuI	CTGGAG	4 cut(s)	139, 479, 759, 1206
HaeII	RGCGCY	1 cut(s)	948
HaeIII	GGCC	4 cut(s)	289, 339, 747, 768
HapII	CCGG	2 cut(s)	286, 424
HhaI	GCGC	1 cut(s)	947
Hin1II	CATG	3 cut(s)	161, 529, 779
Hin6I	GCGC	1 cut(s)	945
HinP1I	GCGC	1 cut(s)	945
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HindIII	AAGCTT	1 cut(s)	269
HpaII	CCGG	2 cut(s)	286, 424
Hpy166II	GTNNAC	3 cut(s)	413, 694, 773
Hpy188I	TCNGA	3 cut(s)	187, 301, 633
Hpy188III	TCNNGA	8 cut(s)	158, 245, 560, 665, 738, 757, 811, 999
Hpy8I	GTNNAC	3 cut(s)	413, 694, 773
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	468, 817
HpyCH4III	ACNGT	5 cut(s)	147, 251, 674, 691, 1029
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	7 cut(s)	168, 358, 464, 933, 992, 1162, 1198
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 1207
HpyF3I	CTNAG	5 cut(s)	632, 782, 812, 955, 1098
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	3 cut(s)	161, 529, 779
HspAI	GCGC	1 cut(s)	945
KroI	GCCGGC	1 cut(s)	285
KroNI	GCCGGC	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	6 cut(s)	27, 206, 351, 520, 586, 1130
LmnI	GCTCC	4 cut(s)	346, 430, 952, 972
Lsp1109I	GCAGC	2 cut(s)	262, 1210
MaeI	CTAG	4 cut(s)	99, 408, 530, 1005
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	3 cut(s)	113, 242, 715
MalI	GATC	6 cut(s)	29, 208, 353, 522, 588, 1132
MboI	GATC	6 cut(s)	27, 206, 351, 520, 586, 1130
MboII	GAAGA	3 cut(s)	146, 593, 721
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	672
MluCI	AATT	7 cut(s)	473, 547, 594, 725, 1013, 1202, 1230
MlyI	GAGTC	2 cut(s)	362, 490
MmeI	TCCRAC	4 cut(s)	408, 558, 669, 879
MnlI	CCTC	9 cut(s)	74, 87, 350, 503, 699, 734, 737, 807, 938
Mph1103I	ATGCAT	1 cut(s)	170
MroNI	GCCGGC	1 cut(s)	285
MroXI	GAANNNNTTC	1 cut(s)	1232
MseI	TTAA	4 cut(s)	80, 267, 326, 1059
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	2 cut(s)	286, 424
MspR9I	CCNGG	1 cut(s)	1185
MvaI	CCWGG	1 cut(s)	1185
MwoI	GCNNNNNNNGC	2 cut(s)	355, 1207
NaeI	GCCGGC	1 cut(s)	287
NdeII	GATC	6 cut(s)	27, 206, 351, 520, 586, 1130
NgoMIV	GCCGGC	1 cut(s)	285
NlaIII	CATG	3 cut(s)	161, 529, 779
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	2 cut(s)	242, 715
NsiI	ATGCAT	1 cut(s)	170
NspI	RCATGY	2 cut(s)	529, 779
NspV	TTCGAA	1 cut(s)	604
OliI	CACNNNNGTG	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	529
PagI	TCATGA	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	1232
PfeI	GAWTC	8 cut(s)	316, 447, 606, 619, 641, 734, 1111, 1190
PflMI	CCANNNNNTGG	1 cut(s)	117
PinAI	ACCGGT	1 cut(s)	423
PkrI	GCNGC	2 cut(s)	277, 1200
Ple19I	CGATCG	1 cut(s)	1133
PleI	GAGTC	2 cut(s)	362, 489
PpsI	GAGTC	2 cut(s)	362, 489
Psp1406I	AACGTT	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	1183
PspGI	CCWGG	1 cut(s)	1183
PspN4I	GGNNCC	1 cut(s)	208
PstI	CTGCAG	2 cut(s)	360, 466
PstNI	CAGNNNCTG	2 cut(s)	117, 980
PsuI	RGATCY	1 cut(s)	206
PvuI	CGATCG	1 cut(s)	1133
RsaI	GTAC	3 cut(s)	837, 985, 1083
RsaNI	GTAC	3 cut(s)	836, 984, 1082
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	4 cut(s)	80, 267, 326, 1059
SatI	GCNGC	2 cut(s)	276, 1199
Sau3AI	GATC	6 cut(s)	27, 206, 351, 520, 586, 1130
SbfI	CCTGCAGG	1 cut(s)	360
SchI	GAGTC	2 cut(s)	362, 490
ScrFI	CCNGG	1 cut(s)	1185
SdaI	CCTGCAGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	672
SfcI	CTRYAG	4 cut(s)	255, 356, 462, 1155
SfuI	TTCGAA	1 cut(s)	604
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	5 cut(s)	341, 623, 665, 703, 884
SmoI	CTYRAG	5 cut(s)	341, 623, 665, 703, 884
SpeI	ACTAGT	1 cut(s)	98
SphI	GCATGC	1 cut(s)	529
Sse8387I	CCTGCAGG	1 cut(s)	360
Sse9I	AATT	7 cut(s)	473, 547, 594, 725, 1013, 1202, 1230
SseBI	AGGCCT	1 cut(s)	339
SsiI	CCGC	1 cut(s)	610
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	4 cut(s)	99, 408, 530, 1005
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	1183
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	5 cut(s)	147, 251, 674, 691, 1029
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	4 cut(s)	505, 604, 732, 1129
TasI	AATT	7 cut(s)	473, 547, 594, 725, 1013, 1202, 1230
TatI	WGTACW	1 cut(s)	1081
TfiI	GAWTC	8 cut(s)	316, 447, 606, 619, 641, 734, 1111, 1190
Tru1I	TTAA	4 cut(s)	80, 267, 326, 1059
Tru9I	TTAA	4 cut(s)	80, 267, 326, 1059
TscAI	CASTG	3 cut(s)	317, 420, 808
TseFI	GTSAC	2 cut(s)	242, 715
TseI	GCWGC	2 cut(s)	275, 1198
Tsp45I	GTSAC	2 cut(s)	242, 715
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	3 cut(s)	317, 420, 808
Van91I	CCANNNNNTGG	1 cut(s)	117
XagI	CCTNNNNNAGG	1 cut(s)	811
XapI	RAATTY	3 cut(s)	473, 1013, 1230
XceI	RCATGY	2 cut(s)	529, 779
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1006
XmiI	GTMKAC	1 cut(s)	772
XmnI	GAANNNNTTC	1 cut(s)	1232
XspI	CTAG	4 cut(s)	99, 408, 530, 1005
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.