Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0016904

Physical Location & Seq

Genomic Coordinates Reverse (-)

74814300 .. 74816122

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G047540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGATAGATAGGATTAGCAATCTTCCTTGGGAAGTATTAGAAAGTATCCTAGTGTTGTTGCCACTAAAACAAGTTTTTGTTATTGATGACAAACTCATCCCCAATTCCATAAGAAACATAGTGGCAAGATGGAGGTTTATCATGAAAATTCTTCGTCAAGTTGAAGCACATAACTCTGTCTGTGCGATAGAGAAATCTGATTTAGACCAGTGGATTCAATATATAGCTGAGAAAGGTCTCAAGGAGCTGATCCTGAAAGAGTCTGCTTTATTCAACCGCTGTGATTTCAGGCTGCCTTGTTCACTATTCTCTTGTCCACAACTGCCTCATTTGGAGCTCTCCACTTGTGTGATCAATCCACCTCTGGAAAGTCACATTGGATTCAAGTCTCTCAGAACTCTCCAGCTCAATAAAGTCGGCATAACCTCATGCGTGCTAGAACGGTTAATTGGCAACTGCCCTCTTCTTGAAAGACTGACATTGTTGTATCTTGTTCATCTTATCTTTCTGAGAATCCAAAACCCGAACCTCAAGTATCTGGAGATCCATTCGAAATTTGAAGACGTATGTCTCGCAACTGGCAAGTGGTGGGGCGATCGCCGATACTATATAAAATCCAATTTATCTAGGATTGTTGGTCACCTACATGCTATTGAGAGACTGAGCCTACACAGTAGCTTCCTAGAGTCATCTTCATCATCTGACAGTTTTTCAACTCAAGGATTTAAGGTTAGACAGATGATGTGCCTCTGCATTCTTAGAAGTGCTCCAAACTTGGAGAAACTATTCCTTTTGGTGCTGAACATAACAGCTGTTGATGGATTTGAATCTAATTCCGTACTTACAAAGTTTATAAAGGATCGGTCCCCCAATCTAAAACAAATGACTGTTCTCCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

301

Amino Acids

34.73

Weight (kDa)

8.88

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	56 - 185	1.5e-14	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	69 - 189	3.1e-18	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016904)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45851
malus_domestica	MD09G1079300.v1.1 MD17G1069700.v1.1
prunus_persica	Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1
pyrus_communis	pycom09g00610 pycom17g06980
rosa_laevigata	RLG00000021436
rosa_rugosa	Rorug02G0506500
rosa_samantha	Rh2DG594900
rosa_wichuraiana	Rw2G047540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	857
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	3 cut(s)	247, 541, 870
AcsI	RAATTY	2 cut(s)	150, 557
AfaI	GTAC	1 cut(s)	843
AgsI	TTSAA	8 cut(s)	167, 221, 277, 388, 473, 563, 717, 830
AjuI	GAANNNNNNNTTGG	4 cut(s)	363, 395, 435, 467
AleI	CACNNNNGTG	1 cut(s)	350
AluBI	AGCT	6 cut(s)	230, 250, 340, 409, 681, 815
AluI	AGCT	6 cut(s)	230, 250, 340, 409, 681, 815
Alw21I	GWGCWC	2 cut(s)	342, 772
Alw26I	GTCTC	4 cut(s)	245, 396, 578, 655
AlwI	GGATC	3 cut(s)	247, 541, 870
ApeKI	GCWGC	1 cut(s)	295
ApoI	RAATTY	2 cut(s)	150, 557
AsiSI	GCGATCGC	1 cut(s)	601
Asp700I	GAANNNNTTC	1 cut(s)	788
AspS9I	GGNCC	1 cut(s)	867
AsuHPI	GGTGA	1 cut(s)	635
AsuII	TTCGAA	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	867
BanII	GRGCYC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	570
Bbv12I	GWGCWC	2 cut(s)	342, 772
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	2 cut(s)	126, 815
BciVI	GTATCC	1 cut(s)	59
BclI	TGATCA	1 cut(s)	354
BcoDI	GTCTC	4 cut(s)	245, 396, 578, 655
BfaI	CTAG	4 cut(s)	53, 440, 630, 686
BfuI	GTATCC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	867
BmgT120I	GGNCC	1 cut(s)	867
BmiI	GGNNCC	1 cut(s)	869
BoxI	GACNNNNGTC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	570
BpmI	CTGGAG	2 cut(s)	389, 563
Bpu14I	TTCGAA	1 cut(s)	554
BpuEI	CTTGAG	3 cut(s)	227, 518, 705
BsaBI	GATNNNNATC	1 cut(s)	829
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	211, 586
Bse8I	GATNNNNATC	1 cut(s)	829
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	829
BseMII	CTCAG	4 cut(s)	222, 409, 503, 656
BseNI	ACTGG	2 cut(s)	211, 586
BseXI	GCAGC	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	601
BsiEI	CGRYCG	1 cut(s)	601
BsiHKAI	GWGCWC	2 cut(s)	342, 772
BslFI	GGGAC	1 cut(s)	853
BsmAI	GTCTC	4 cut(s)	245, 396, 578, 655
BsmFI	GGGAC	1 cut(s)	853
BsmI	GAATGC	1 cut(s)	756
Bso31I	GGTCTC	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	342, 772
Bsp143I	GATC	5 cut(s)	252, 354, 546, 598, 862
BspACI	CCGC	1 cut(s)	280
BspCNI	CTCAG	4 cut(s)	223, 408, 504, 657
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	869
BspPI	GGATC	3 cut(s)	247, 541, 870
BspT104I	TTCGAA	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	211, 586
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	5 cut(s)	252, 354, 546, 598, 862
BssT1I	CCWWGG	1 cut(s)	29
Bst4CI	ACNGT	4 cut(s)	447, 677, 710, 892
Bst6I	CTCTTC	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	437
BstDEI	CTNAG	5 cut(s)	231, 395, 512, 665, 761
BstEII	GGTNACC	1 cut(s)	641
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	5 cut(s)	255, 357, 549, 601, 865
BstMAI	GTCTC	4 cut(s)	245, 396, 578, 655
BstMBI	GATC	5 cut(s)	252, 354, 546, 598, 862
BstMCI	CGRYCG	1 cut(s)	601
BstNSI	RCATGY	1 cut(s)	653
BstPAI	GACNNNNGTC	1 cut(s)	570
BstPI	GGTNACC	1 cut(s)	641
BstV1I	GCAGC	1 cut(s)	282
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
BsuI	GTATCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	437
CciI	TCATGA	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	867
Csp6I	GTAC	1 cut(s)	842
CviAII	CATG	3 cut(s)	145, 432, 650
CviJI	RGCY	8 cut(s)	230, 250, 295, 340, 409, 669, 681, 815
CviKI_1	RGCY	8 cut(s)	230, 250, 295, 340, 409, 669, 681, 815
CviQI	GTAC	1 cut(s)	842
DdeI	CTNAG	5 cut(s)	231, 395, 512, 665, 761
DpnI	GATC	5 cut(s)	254, 356, 548, 600, 864
DpnII	GATC	5 cut(s)	252, 354, 546, 598, 862
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Ecl136II	GAGCTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	867
Eco53kI	GAGCTC	1 cut(s)	340
Eco91I	GGTNACC	1 cut(s)	641
EcoICRI	GAGCTC	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	641
EcoT14I	CCWWGG	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	3 cut(s)	148, 435, 653
FaqI	GGGAC	1 cut(s)	853
FatI	CATG	3 cut(s)	144, 431, 649
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	296
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	296
FspBI	CTAG	4 cut(s)	53, 440, 630, 686
GluI	GCNGC	1 cut(s)	296
GsuI	CTGGAG	2 cut(s)	389, 563
Hin1II	CATG	3 cut(s)	148, 435, 653
HinfI	GANTC	6 cut(s)	217, 263, 384, 516, 689, 830
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	2 cut(s)	305, 320
Hpy188I	TCNGA	4 cut(s)	202, 398, 513, 706
Hpy188III	TCNNGA	5 cut(s)	145, 256, 368, 470, 542
Hpy8I	GTNNAC	2 cut(s)	305, 320
HpyCH4III	ACNGT	4 cut(s)	447, 677, 710, 892
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	1 cut(s)	756
HpyF3I	CTNAG	5 cut(s)	231, 395, 512, 665, 761
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	3 cut(s)	148, 435, 653
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	5 cut(s)	252, 354, 546, 598, 862
LmnI	GCTCC	3 cut(s)	247, 337, 775
LpnPI	CCDG	7 cut(s)	224, 269, 277, 353, 419, 527, 567
Lsp1109I	GCAGC	1 cut(s)	282
MaeI	CTAG	4 cut(s)	53, 440, 630, 686
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	374, 641
MalI	GATC	5 cut(s)	254, 356, 548, 600, 864
MboI	GATC	5 cut(s)	252, 354, 546, 598, 862
MboII	GAAGA	5 cut(s)	17, 146, 458, 575, 687
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	2 cut(s)	342, 772
MluCI	AATT	6 cut(s)	106, 150, 450, 557, 622, 835
MlyI	GAGTC	2 cut(s)	272, 698
MnlI	CCTC	7 cut(s)	129, 339, 375, 439, 474, 542, 761
MroXI	GAANNNNTTC	1 cut(s)	788
MseI	TTAA	2 cut(s)	449, 729
MslI	CAYNNNNRTG	2 cut(s)	350, 648
MspA1I	CMGCKG	2 cut(s)	282, 815
Mva1269I	GAATGC	1 cut(s)	756
NdeII	GATC	5 cut(s)	252, 354, 546, 598, 862
NlaIII	CATG	3 cut(s)	148, 435, 653
NlaIV	GGNNCC	1 cut(s)	869
NmuCI	GTSAC	2 cut(s)	374, 641
NspI	RCATGY	1 cut(s)	653
NspV	TTCGAA	1 cut(s)	554
OliI	CACNNNNGTG	1 cut(s)	350
PagI	TCATGA	1 cut(s)	144
PctI	GAATGC	1 cut(s)	756
PdmI	GAANNNNTTC	1 cut(s)	788
PfeI	GAWTC	4 cut(s)	217, 384, 516, 830
PkrI	GCNGC	1 cut(s)	297
Ple19I	CGATCG	1 cut(s)	601
PleI	GAGTC	2 cut(s)	271, 697
PpsI	GAGTC	2 cut(s)	271, 697
PshAI	GACNNNNGTC	1 cut(s)	570
PsiI	TTATAA	1 cut(s)	857
Psp124BI	GAGCTC	1 cut(s)	342
PspEI	GGTNACC	1 cut(s)	641
PspN4I	GGNNCC	1 cut(s)	869
PspPI	GGNCC	1 cut(s)	867
PsuI	RGATCY	1 cut(s)	546
PvuI	CGATCG	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	815
RgaI	GCGATCGC	1 cut(s)	601
RsaI	GTAC	1 cut(s)	843
RsaNI	GTAC	1 cut(s)	842
RseI	CAYNNNNRTG	2 cut(s)	350, 648
SacI	GAGCTC	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	449, 729
SatI	GCNGC	1 cut(s)	296
Sau3AI	GATC	5 cut(s)	252, 354, 546, 598, 862
Sau96I	GGNCC	1 cut(s)	867
SchI	GAGTC	2 cut(s)	272, 698
SduI	GDGCHC	2 cut(s)	342, 772
SfaAI	GCGATCGC	1 cut(s)	601
SfuI	TTCGAA	1 cut(s)	554
SgfI	GCGATCGC	1 cut(s)	601
SinI	GGWCC	1 cut(s)	867
SmiMI	CAYNNNNRTG	2 cut(s)	350, 648
SmlI	CTYRAG	3 cut(s)	242, 533, 720
SmoI	CTYRAG	3 cut(s)	242, 533, 720
Sse9I	AATT	6 cut(s)	106, 150, 450, 557, 622, 835
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	4 cut(s)	53, 440, 630, 686
SstI	GAGCTC	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	4 cut(s)	447, 677, 710, 892
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	1 cut(s)	554
TaqII	GACCGA	1 cut(s)	855
TasI	AATT	6 cut(s)	106, 150, 450, 557, 622, 835
TfiI	GAWTC	4 cut(s)	217, 384, 516, 830
Tru1I	TTAA	2 cut(s)	449, 729
Tru9I	TTAA	2 cut(s)	449, 729
TscAI	CASTG	1 cut(s)	218
TseFI	GTSAC	2 cut(s)	374, 641
TseI	GCWGC	1 cut(s)	295
Tsp45I	GTSAC	2 cut(s)	374, 641
TspDTI	ATGAA	3 cut(s)	161, 488, 687
TspGWI	ACGGA	1 cut(s)	829
TspRI	CASTG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	867
XapI	RAATTY	2 cut(s)	150, 557
XceI	RCATGY	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	788
XspI	CTAG	4 cut(s)	53, 440, 630, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.