Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009706

Physical Location & Seq

Genomic Coordinates Forward (+)

35900324 .. 35900869

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCACATAGCTCAGGGAGTTCTCAAAGCAATAAACGTGAACAAGCTCACCGACGCCGGCTGCAGGGTAAAGATTCTGATAGCAGATTGGTTTGCAATGATGAACGACAAGATGGAGGGTGACATGCAGAAGATAGAGACAGTAGGTCGATACTTCATCGAGGTATGGAAATCTGTGGGGATGAAGAACCTAGAAAAAGTCGACTTTGTTTGGTCTTCCCATGAGATTAACTCTAGAGCATACGAGTACTGGCCTCTTGTAATGGACATTGGTCGGCAGAACACACTGCCAAGGATAATCAGGTGTTGCACAATTATGGGTCGACAAGAGAGAGATAACTTGAGTGCAGCACAGATCATGTACCCATTGATGCAATGTGCCAATGTTTTCTTCTTGAAAGCTGATATATGTCAGCTGGGAACGGACCAGCGCAAAGTGAACATGCTTGCGAGAGAGTACTGCGACAAGATCAAGAAGAAGGACAAGCCTGTGATCTTGCCACATCGACTGCTGCCTGGCTTGAAGGAAGGGCAGGATAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

182

Amino Acids

21.0

Weight (kDa)

9.12

Isoelectric Point (pI)

29.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	1 - 181	7.3e-35	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47320 FvH4_6g47330
pyrus_communis	pycom06g08020
rosa_chinensis	RchiOBHm_Chr5g0057211 RchiOBHm_Chr6g0257261 RchiOBHm_Chr6g0275951
rosa_laevigata	RLG00000019640
rosa_multiflora	Rmu_sc0004043.1_g000002 Rmu_sc0009253.1_g000002 Rmu_sc0009253.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106350
rosa_rugosa	Rorug02G0522500
rosa_samantha	Rh2AG397200 Rh2CG383800 Rh4AG189900 Rh4DG188700 Rh6AG209300 Rh6BG213500 Rh6CG216500 Rh6DG205600
rosa_wichuraiana	Rw4G016200 Rw6G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	201, 322
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	3 cut(s)	248, 362, 458
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	397, 523
AhdI	GACNNNNNGTC	1 cut(s)	144
AjnI	CCWGG	1 cut(s)	514
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	4 cut(s)	11, 46, 401, 415
AluI	AGCT	4 cut(s)	11, 46, 401, 415
Alw26I	GTCTC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	3 cut(s)	60, 347, 511
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	2 cut(s)	40, 131
AvaII	GGWCC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	47, 359, 498
BccI	CCATC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	191, 234
BfmI	CTRYAG	1 cut(s)	61
BisI	GCNGC	3 cut(s)	61, 348, 512
BlsI	GCNGC	3 cut(s)	62, 349, 513
BmcAI	AGTACT	2 cut(s)	248, 458
Bme1390I	CCNGG	1 cut(s)	516
Bme18I	GGWCC	1 cut(s)	424
BmeRI	GACNNNNNGTC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	424
BmrFI	CCNGG	1 cut(s)	516
BmsI	GCATC	1 cut(s)	360
BoxI	GACNNNNGTC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
Bpu10I	CCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	2 cut(s)	102, 380
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMI	GCAATG	2 cut(s)	102, 380
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	47, 359, 498
BseYI	CCCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	253
Bsp143I	GATC	3 cut(s)	354, 468, 492
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	65
BsrDI	GCAATG	2 cut(s)	102, 380
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	3 cut(s)	354, 468, 492
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	1 cut(s)	142
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	58, 447
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	3 cut(s)	357, 471, 495
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	3 cut(s)	354, 468, 492
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	2 cut(s)	127, 445
BstPAI	GACNNNNGTC	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	3 cut(s)	47, 359, 498
BstV2I	GAAGAC	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	58, 447
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	424
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	247, 361, 457
CviAII	CATG	4 cut(s)	124, 221, 358, 442
CviJI	RGCY	8 cut(s)	11, 46, 60, 253, 401, 415, 487, 519
CviKI_1	RGCY	8 cut(s)	11, 46, 60, 253, 401, 415, 487, 519
CviQI	GTAC	3 cut(s)	247, 361, 457
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	3 cut(s)	356, 470, 494
DpnII	GATC	3 cut(s)	354, 468, 492
DriI	GACNNNNNGTC	1 cut(s)	144
Eam1105I	GACNNNNNGTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	4 cut(s)	127, 224, 361, 445
FatI	CATG	4 cut(s)	123, 220, 357, 441
FblI	GTMKAC	2 cut(s)	201, 322
Fnu4HI	GCNGC	3 cut(s)	61, 348, 512
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	3 cut(s)	61, 348, 512
FspBI	CTAG	2 cut(s)	191, 234
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	3 cut(s)	61, 348, 512
GsaI	CCCAGC	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	4 cut(s)	127, 224, 361, 445
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	2 cut(s)	202, 323
HindII	GTYRAC	2 cut(s)	202, 323
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	40, 131
Hpy166II	GTNNAC	4 cut(s)	40, 202, 323, 439
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	3 cut(s)	234, 394, 472
Hpy8I	GTNNAC	4 cut(s)	40, 202, 323, 439
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	472, 517, 521
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	7 cut(s)	4, 63, 95, 127, 309, 347, 373
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	4 cut(s)	127, 224, 361, 445
HspAI	GCGC	1 cut(s)	430
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	354, 468, 492
Lsp1109I	GCAGC	3 cut(s)	47, 359, 498
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	2 cut(s)	191, 234
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	3 cut(s)	356, 470, 494
MboI	GATC	3 cut(s)	354, 468, 492
MboII	GAAGA	5 cut(s)	142, 196, 207, 382, 487
MluCI	AATT	1 cut(s)	312
MnlI	CCTC	3 cut(s)	109, 154, 264
MroNI	GCCGGC	1 cut(s)	56
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	516
NaeI	GCCGGC	1 cut(s)	58
NdeII	GATC	3 cut(s)	354, 468, 492
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	127, 224, 361, 445
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	2 cut(s)	127, 445
PdiI	GCCGGC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	62, 349, 513
PshAI	GACNNNNGTC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	514
PspPI	GGNCC	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	3 cut(s)	248, 362, 458
RsaNI	GTAC	3 cut(s)	247, 361, 457
RseI	CAYNNNNRTG	1 cut(s)	314
SalI	GTCGAC	2 cut(s)	200, 321
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	3 cut(s)	61, 348, 512
Sau3AI	GATC	3 cut(s)	354, 468, 492
Sau96I	GGNCC	1 cut(s)	424
ScaI	AGTACT	2 cut(s)	248, 458
ScrFI	CCNGG	1 cut(s)	516
SetI	ASST	9 cut(s)	13, 39, 48, 148, 165, 192, 305, 403, 417
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	1 cut(s)	312
SspMI	CTAG	2 cut(s)	191, 234
StyD4I	CCNGG	1 cut(s)	514
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	5 cut(s)	148, 159, 201, 322, 505
TasI	AATT	1 cut(s)	312
TatI	WGTACW	2 cut(s)	246, 456
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	3 cut(s)	60, 347, 511
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	116, 145, 197
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	424
XbaI	TCTAGA	1 cut(s)	233
XceI	RCATGY	2 cut(s)	127, 445
XmiI	GTMKAC	2 cut(s)	201, 322
XspI	CTAG	2 cut(s)	191, 234
ZrmI	AGTACT	2 cut(s)	248, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.