Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009706

Physical Location & Seq

Genomic Coordinates Forward (+)

35900897 .. 35901691

Gene Structure 795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAAGATGATGAGGCCGAAGTTAACTTGAAAATCAAGAAAGCTCACTGTGTTCCAAAACAGGTAGAGGGAAATCCGTGTTTGGAGTATGTGCAGCACCTGGTTTTCCCATGGTTTCATGAGTTTGTTGTGGAGCGAAGCGAAAAGAATGGCGGAGACATCACTTTCACAAAGTTTGTGGACCTGAGTGAGGCTTATGCAAGCGGCAAGATTCATCCGGAAGACCTGAAACCGGCATTGGCAAAAGCCTTGAACAAAATATTGGAGCCGGTAAGGTTACACTTCAAGAATGACCCAACTGCAAAGCAGCTGTTACGAAGTGTTAAGAGCTACAGAGTCCACTACCCTTCATGGCTTTCTCCTCTCTTGCGATGGTCCACTCCATTCGAGTCCTTTTTTCTTTTCTTTTTCTCAGTTTTTCGTAAATCTATCAACATTGTACGCTCAACTTTGAGAATATTGATATCCAGGGAAAAGCAGTGTAAAGAAACAAAGATGTCAATCACTACAATTGTTTCCAAAGTGGCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

178

Amino Acids

20.58

Weight (kDa)

9.34

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	1 - 89	1.3e-06	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47320 FvH4_6g47330
pyrus_communis	pycom06g08020
rosa_chinensis	RchiOBHm_Chr5g0057211 RchiOBHm_Chr6g0257261 RchiOBHm_Chr6g0275951
rosa_laevigata	RLG00000019640
rosa_multiflora	Rmu_sc0004043.1_g000002 Rmu_sc0009253.1_g000002 Rmu_sc0009253.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106350
rosa_rugosa	Rorug02G0522500
rosa_samantha	Rh2AG397200 Rh2CG383800 Rh4AG189900 Rh4DG188700 Rh6AG209300 Rh6BG213500 Rh6CG216500 Rh6DG205600
rosa_wichuraiana	Rw4G016200 Rw6G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	2 cut(s)	153, 204
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	2 cut(s)	190, 232
AgsI	TTSAA	3 cut(s)	31, 253, 286
AjnI	CCWGG	2 cut(s)	99, 467
AjuI	GAANNNNNNNTTGG	4 cut(s)	221, 245, 253, 277
AluBI	AGCT	3 cut(s)	44, 310, 330
AluI	AGCT	3 cut(s)	44, 310, 330
Alw26I	GTCTC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	100
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	2 cut(s)	94, 307
AspS9I	GGNCC	2 cut(s)	181, 375
AvaII	GGWCC	2 cut(s)	181, 375
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	106, 319
BccI	CCATC	1 cut(s)	366
BciT130I	CCWGG	2 cut(s)	101, 469
BcoDI	GTCTC	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	331
BisI	GCNGC	3 cut(s)	95, 205, 308
BlsI	GCNGC	3 cut(s)	96, 206, 309
Bme1390I	CCNGG	2 cut(s)	101, 469
Bme18I	GGWCC	2 cut(s)	181, 375
BmgT120I	GGNCC	2 cut(s)	181, 375
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	101, 469
BpiI	GAAGAC	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	110, 468
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 232
Bse118I	RCCGGY	2 cut(s)	232, 268
Bse8I	GATNNNNATC	1 cut(s)	500
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	101, 469
BseDI	CCNNGG	2 cut(s)	110, 468
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	500
BseLI	CCNNNNNNNGG	2 cut(s)	190, 232
BseMII	CTCAG	2 cut(s)	176, 426
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	106, 319
BsgI	GTGCAG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	218, 233, 269
BslI	CCNNNNNNNGG	2 cut(s)	190, 232
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	17
Bsp13I	TCCGGA	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	2 cut(s)	153, 204
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	2 cut(s)	177, 425
BspEI	TCCGGA	1 cut(s)	217
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	267
BsrFI	RCCGGY	2 cut(s)	232, 268
BssAI	RCCGGY	2 cut(s)	232, 268
BssECI	CCNNGG	2 cut(s)	110, 468
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	2 cut(s)	101, 469
Bst4CI	ACNGT	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	185, 412
BstDSI	CCRYGG	1 cut(s)	110
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	150
BstNI	CCWGG	2 cut(s)	101, 469
BstSCI	CCNGG	2 cut(s)	99, 467
BstSFI	CTRYAG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	106, 319
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	110
BtgZI	GCGATG	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	2 cut(s)	46, 485
Cac8I	GCNNGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	100
CciI	TCATGA	1 cut(s)	118
Cfr10I	RCCGGY	2 cut(s)	232, 268
Cfr13I	GGNCC	2 cut(s)	181, 375
CsiI	ACCWGGT	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	440
CspCI	CAANNNNNGTGG	2 cut(s)	159, 194
CviAII	CATG	3 cut(s)	111, 119, 351
CviJI	RGCY	8 cut(s)	17, 44, 194, 248, 268, 310, 330, 355
CviKI_1	RGCY	8 cut(s)	17, 44, 194, 248, 268, 310, 330, 355
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	2 cut(s)	185, 412
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	465
Eco47I	GGWCC	2 cut(s)	181, 375
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	99, 467
EcoRV	GATATC	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	3 cut(s)	114, 122, 354
FaiI	YATR	5 cut(s)	90, 112, 120, 198, 352
FatI	CATG	3 cut(s)	110, 118, 350
Fnu4HI	GCNGC	3 cut(s)	95, 205, 308
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	3 cut(s)	95, 205, 308
GluI	GCNGC	3 cut(s)	95, 205, 308
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	3 cut(s)	218, 233, 269
Hin1II	CATG	3 cut(s)	114, 122, 354
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	3 cut(s)	211, 336, 389
HpaI	GTTAAC	1 cut(s)	25
HpaII	CCGG	3 cut(s)	218, 233, 269
Hpy166II	GTNNAC	4 cut(s)	25, 181, 340, 378
Hpy188III	TCNNGA	4 cut(s)	37, 119, 218, 286
Hpy8I	GTNNAC	4 cut(s)	25, 181, 340, 378
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	94, 200, 302
HpyF3I	CTNAG	2 cut(s)	185, 412
Hsp92II	CATG	3 cut(s)	114, 122, 354
Kpn2I	TCCGGA	1 cut(s)	217
KspAI	GTTAAC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	133, 265
Lsp1109I	GCAGC	2 cut(s)	106, 319
MabI	ACCWGGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	276, 312
MboII	GAAGA	2 cut(s)	17, 233
MfeI	CAATTG	1 cut(s)	510
MluCI	AATT	1 cut(s)	510
MlyI	GAGTC	2 cut(s)	345, 398
MnlI	CCTC	4 cut(s)	7, 61, 184, 372
MroI	TCCGGA	1 cut(s)	217
MseI	TTAA	2 cut(s)	24, 324
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	3 cut(s)	218, 233, 269
MspR9I	CCNGG	2 cut(s)	101, 469
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	2 cut(s)	101, 469
NcoI	CCATGG	1 cut(s)	110
NlaIII	CATG	3 cut(s)	114, 122, 354
NlaIV	GGNNCC	1 cut(s)	267
PagI	TCATGA	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	96, 206, 309
PleI	GAGTC	2 cut(s)	344, 397
PpsI	GAGTC	2 cut(s)	344, 397
Psp6I	CCWGG	2 cut(s)	99, 467
PspGI	CCWGG	2 cut(s)	99, 467
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	2 cut(s)	181, 375
PstNI	CAGNNNCTG	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
SaqAI	TTAA	2 cut(s)	24, 324
SatI	GCNGC	3 cut(s)	95, 205, 308
Sau96I	GGNCC	2 cut(s)	181, 375
SchI	GAGTC	2 cut(s)	345, 398
ScrFI	CCNGG	2 cut(s)	101, 469
SetI	ASST	8 cut(s)	46, 66, 102, 186, 228, 278, 312, 332
SexAI	ACCWGGT	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	331
SinI	GGWCC	2 cut(s)	181, 375
Sse9I	AATT	1 cut(s)	510
SsiI	CCGC	2 cut(s)	153, 204
SspI	AATATT	2 cut(s)	261, 459
StyD4I	CCNGG	2 cut(s)	99, 467
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	50
TaqI	TCGA	1 cut(s)	387
TasI	AATT	1 cut(s)	510
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	24, 324
Tru9I	TTAA	2 cut(s)	24, 324
TscAI	CASTG	2 cut(s)	53, 485
TseI	GCWGC	2 cut(s)	94, 307
TspDTI	ATGAA	3 cut(s)	107, 203, 339
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	53, 485
VpaK11BI	GGWCC	2 cut(s)	181, 375
XagI	CCTNNNNNAGG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.