Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009706

Physical Location & Seq

Genomic Coordinates Forward (+)

29937660 .. 29938759

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCAACCAAATTGGCACCGGAGCAAGTAATTCCTTCAGACGAGATCAAGCCTATGTCGATATCTGATGCGCCTGAAGTCCAAAAAATGACTGTGGCCGAGAGGTGCAAGCTGATTTTAACGGTTGGGGAGCAGTGTATTAAAGAAGAAGAAGAGCTTCGGAATCTGCTTGAACGCAAGCCTGAACCCATCGCCTACGACGGGTTCGAACCCTCGGGCAGGATGCACATTGCTCAGGGAATTGAGACCGTGGGACACTACTTCATTGAGGTTTGGAAATCTATAGGAATGGACCTTGAAAAAGTGGAGTTTGTGTGGTCTTCGAAGGAGATTAATTCGAGGGCACATGAGTACTTGCCTCTTGTTATGGACATTGCAGGACGAAACTCGATAGACAGGATGAAGAGATGTACACAAATTATGGGTCGAGAAGCCGGTGATAACATGCCTTTAGCACAAGCCATGTACCCATGTATGCAATGTGCAGATGTATTCTTTTTGAAGGCTGACATCTGCCAAATGGGAACGGATCAACTCAAAGTGAATATGCTTGCGAGAGAGTACTGCAATCAAATAGAGAAGAAGGACAAGCCTGTGATCTTGTCGCATCGGATGCTGCCCGGCTTGAAGGAAGGGCAGAATAAGATGTCGAAAAGTGATGAGTCCTCCGCCATATTCATGGAAGATGATGAAGCCCAAGTGAACTTGAAAATCAAGAAAGCTCACTGCGTTCCCGGAGAGGTCAAGGGCAATCCGTGTTTGGAGTATGTGCAGCACCTGATTTTCCCATGGTTTAATGAGTTTGTTGTGGAGCGAAGCGAAAAAAATGGCGGAGACATCACTTTCACAAAATTTGAAGATCTGAGTAAGGCTTATGCAAGCGGCCAGCTTCATCCTGGCGACCTGAAACCGGCATTGGCGAAATCCTTGAACAAAATGTTGGAGCCGGTAAGATCACACTTTAAGAATGGGGAAATTCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

328

Amino Acids

37.18

Weight (kDa)

5.63

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	87 - 315	3.9e-44	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47320 FvH4_6g47330
pyrus_communis	pycom06g08020
rosa_chinensis	RchiOBHm_Chr5g0057211 RchiOBHm_Chr6g0257261 RchiOBHm_Chr6g0275951
rosa_laevigata	RLG00000019640
rosa_multiflora	Rmu_sc0004043.1_g000002 Rmu_sc0009253.1_g000002 Rmu_sc0009253.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106350
rosa_rugosa	Rorug02G0522500
rosa_samantha	Rh2AG397200 Rh2CG383800 Rh4AG189900 Rh4DG188700 Rh6AG209300 Rh6BG213500 Rh6CG216500 Rh6DG205600
rosa_wichuraiana	Rw4G016200 Rw6G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AciI	CCGC	3 cut(s)	669, 831, 882
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	2 cut(s)	96, 883
AcsI	RAATTY	2 cut(s)	851, 975
AcuI	CTGAAG	2 cut(s)	21, 96
AfaI	GTAC	4 cut(s)	353, 412, 467, 563
AfiI	CCNNNNNNNGG	3 cut(s)	201, 219, 910
AgsI	TTSAA	7 cut(s)	173, 299, 502, 628, 709, 857, 931
AjnI	CCWGG	1 cut(s)	895
AjuI	GAANNNNNNNTTGG	4 cut(s)	899, 923, 931, 955
AluBI	AGCT	4 cut(s)	112, 157, 722, 889
AluI	AGCT	4 cut(s)	112, 157, 722, 889
Alw26I	GTCTC	2 cut(s)	239, 828
AlwI	GGATC	1 cut(s)	537
AlwNI	CAGNNNCTG	1 cut(s)	778
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	2 cut(s)	96, 883
ApeKI	GCWGC	2 cut(s)	616, 772
ApoI	RAATTY	2 cut(s)	851, 975
ArsI	GACNNNNNNTTYG	2 cut(s)	409, 441
AseI	ATTAAT	1 cut(s)	333
Asp700I	GAANNNNTTC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	2 cut(s)	621, 735
AsuHPI	GGTGA	1 cut(s)	449
AsuII	TTCGAA	2 cut(s)	207, 323
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	603, 784
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	897
BcnI	CCSGG	2 cut(s)	621, 735
BcoDI	GTCTC	2 cut(s)	239, 828
BfaI	CTAG	1 cut(s)	980
BfmI	CTRYAG	1 cut(s)	282
BglII	AGATCT	1 cut(s)	859
BisI	GCNGC	3 cut(s)	617, 773, 883
BlsI	GCNGC	3 cut(s)	618, 774, 884
BmcAI	AGTACT	2 cut(s)	353, 563
Bme1390I	CCNGG	3 cut(s)	621, 735, 897
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	18, 945
BmrFI	CCNGG	3 cut(s)	621, 735, 897
BmsI	GCATC	4 cut(s)	58, 213, 603, 616
BpiI	GAAGAC	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	234
Bpu14I	TTCGAA	2 cut(s)	207, 323
BpuMI	CCSGG	2 cut(s)	621, 735
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	213, 249, 788
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 219, 910
Bse118I	RCCGGY	3 cut(s)	434, 910, 946
Bse3DI	GCAATG	3 cut(s)	228, 372, 485
BseBI	CCWGG	1 cut(s)	897
BseDI	CCNNGG	3 cut(s)	213, 249, 788
BseGI	GGATG	4 cut(s)	228, 405, 618, 892
BseLI	CCNNNNNNNGG	3 cut(s)	201, 219, 910
BseMI	GCAATG	3 cut(s)	228, 372, 485
BseMII	CTCAG	2 cut(s)	248, 854
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	603, 784
BsgI	GTGCAG	2 cut(s)	504, 791
BshFI	GGCC	2 cut(s)	98, 885
BshNI	GGYRCC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	6 cut(s)	20, 435, 621, 735, 911, 947
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	3 cut(s)	201, 219, 910
BsmAI	GTCTC	2 cut(s)	239, 828
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	2 cut(s)	98, 885
Bso31I	GGTCTC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	214
Bsp119I	TTCGAA	2 cut(s)	207, 323
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp1407I	TGTACA	1 cut(s)	410
Bsp143I	GATC	5 cut(s)	45, 529, 597, 859, 953
Bsp19I	CCATGG	1 cut(s)	788
BspACI	CCGC	3 cut(s)	669, 831, 882
BspANI	GGCC	2 cut(s)	98, 885
BspCNI	CTCAG	2 cut(s)	247, 855
BspLI	GGNNCC	2 cut(s)	18, 945
BspPI	GGATC	1 cut(s)	537
BspQI	GCTCTTC	1 cut(s)	147
BspT104I	TTCGAA	2 cut(s)	207, 323
BspT107I	GGYRCC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	3 cut(s)	228, 372, 485
BsrFI	RCCGGY	3 cut(s)	434, 910, 946
BsrGI	TGTACA	1 cut(s)	410
BssAI	RCCGGY	3 cut(s)	434, 910, 946
BssECI	CCNNGG	3 cut(s)	213, 249, 788
BssMI	GATC	5 cut(s)	45, 529, 597, 859, 953
BssT1I	CCWWGG	1 cut(s)	788
Bst2UI	CCWGG	1 cut(s)	897
Bst4CI	ACNGT	3 cut(s)	94, 124, 250
Bst6I	CTCTTC	2 cut(s)	147, 398
BstAPI	GCANNNNNTGC	1 cut(s)	613
BstAUI	TGTACA	1 cut(s)	410
BstBI	TTCGAA	2 cut(s)	207, 323
BstC8I	GCNNGC	5 cut(s)	110, 179, 552, 880, 887
BstDEI	CTNAG	2 cut(s)	234, 863
BstDSI	CCRYGG	2 cut(s)	249, 788
BstENI	CCTNNNNNAGG	1 cut(s)	217
BstF5I	GGATG	4 cut(s)	228, 405, 618, 892
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	5 cut(s)	48, 532, 600, 862, 956
BstMAI	GTCTC	2 cut(s)	239, 828
BstMBI	GATC	5 cut(s)	45, 529, 597, 859, 953
BstMWI	GCNNNNNNNGC	1 cut(s)	613
BstNI	CCWGG	1 cut(s)	897
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	3 cut(s)	619, 733, 895
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	2 cut(s)	603, 784
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	859
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	859
BsuRI	GGCC	2 cut(s)	98, 885
BtgI	CCRYGG	2 cut(s)	249, 788
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	4 cut(s)	228, 405, 618, 892
BtsI	GCAGTG	2 cut(s)	140, 724
BtsIMutI	CAGTG	2 cut(s)	140, 724
Cac8I	GCNNGC	5 cut(s)	110, 179, 552, 880, 887
CaiI	CAGNNNCTG	1 cut(s)	778
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	3 cut(s)	434, 910, 946
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	4 cut(s)	352, 411, 466, 562
CviAII	CATG	6 cut(s)	347, 445, 463, 471, 679, 789
CviQI	GTAC	4 cut(s)	352, 411, 466, 562
DdeI	CTNAG	2 cut(s)	234, 863
DpnI	GATC	5 cut(s)	47, 531, 599, 861, 955
DpnII	GATC	5 cut(s)	45, 529, 597, 859, 953
EaeI	YGGCCR	2 cut(s)	96, 883
Eam1104I	CTCTTC	2 cut(s)	147, 398
EarI	CTCTTC	2 cut(s)	147, 398
EciI	GGCGGA	2 cut(s)	658, 846
Eco130I	CCWWGG	1 cut(s)	788
Eco31I	GGTCTC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	2 cut(s)	21, 96
Eco88I	CYCGRG	1 cut(s)	214
EcoNI	CCTNNNNNAGG	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	895
EcoRV	GATATC	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	788
ErhI	CCWWGG	1 cut(s)	788
FaeI	CATG	6 cut(s)	350, 448, 466, 474, 682, 792
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	6 cut(s)	346, 444, 462, 470, 678, 788
Fnu4HI	GCNGC	3 cut(s)	617, 773, 883
FokI	GGATG	4 cut(s)	235, 412, 625, 879
Fsp4HI	GCNGC	3 cut(s)	617, 773, 883
FspBI	CTAG	1 cut(s)	980
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	3 cut(s)	617, 773, 883
HaeIII	GGCC	2 cut(s)	98, 885
HapII	CCGG	6 cut(s)	20, 435, 621, 735, 911, 947
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	6 cut(s)	350, 448, 466, 474, 682, 792
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	2 cut(s)	163, 662
HpaII	CCGG	6 cut(s)	20, 435, 621, 735, 911, 947
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	2 cut(s)	413, 703
Hpy188I	TCNGA	5 cut(s)	40, 67, 162, 612, 864
Hpy188III	TCNNGA	2 cut(s)	428, 715
Hpy8I	GTNNAC	2 cut(s)	413, 703
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	6 cut(s)	45, 319, 496, 577, 622, 626
HpyCH4III	ACNGT	3 cut(s)	94, 124, 250
HpyCH4V	TGCA	8 cut(s)	108, 226, 377, 478, 485, 567, 772, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	613
HpyF3I	CTNAG	2 cut(s)	234, 863
Hsp92II	CATG	6 cut(s)	350, 448, 466, 474, 682, 792
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	5 cut(s)	45, 529, 597, 859, 953
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	4 cut(s)	22, 130, 811, 943
Lsp1109I	GCAGC	2 cut(s)	603, 784
LweI	GCATC	4 cut(s)	58, 213, 603, 616
MaeI	CTAG	1 cut(s)	980
MalI	GATC	5 cut(s)	47, 531, 599, 861, 955
MboI	GATC	5 cut(s)	45, 529, 597, 859, 953
MboII	GAAGA	8 cut(s)	158, 161, 164, 312, 415, 592, 695, 869
MflI	RGATCY	1 cut(s)	859
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	7 cut(s)	11, 30, 240, 334, 417, 851, 975
MlyI	GAGTC	1 cut(s)	671
MmeI	TCCRAC	1 cut(s)	921
MnlI	CCTC	7 cut(s)	96, 223, 262, 333, 369, 676, 733
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	5 cut(s)	119, 141, 333, 795, 963
MslI	CAYNNNNRTG	1 cut(s)	677
MspI	CCGG	6 cut(s)	20, 435, 621, 735, 911, 947
MspR9I	CCNGG	3 cut(s)	621, 735, 897
MvaI	CCWGG	1 cut(s)	897
MwoI	GCNNNNNNNGC	1 cut(s)	613
NciI	CCSGG	2 cut(s)	621, 735
NcoI	CCATGG	1 cut(s)	788
NdeII	GATC	5 cut(s)	45, 529, 597, 859, 953
NlaIII	CATG	6 cut(s)	350, 448, 466, 474, 682, 792
NlaIV	GGNNCC	2 cut(s)	18, 945
NmeAIII	GCCGAG	1 cut(s)	124
NspI	RCATGY	1 cut(s)	448
NspV	TTCGAA	2 cut(s)	207, 323
PciSI	GCTCTTC	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	733
PkrI	GCNGC	3 cut(s)	618, 774, 884
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
PshBI	ATTAAT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	895
PspGI	CCWGG	1 cut(s)	895
PspN4I	GGNNCC	2 cut(s)	18, 945
PspPI	GGNCC	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	778
PsuI	RGATCY	1 cut(s)	859
RsaI	GTAC	4 cut(s)	353, 412, 467, 563
RsaNI	GTAC	4 cut(s)	352, 411, 466, 562
RseI	CAYNNNNRTG	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	5 cut(s)	119, 141, 333, 795, 963
SatI	GCNGC	3 cut(s)	617, 773, 883
Sau3AI	GATC	5 cut(s)	45, 529, 597, 859, 953
Sau96I	GGNCC	1 cut(s)	292
ScaI	AGTACT	2 cut(s)	353, 563
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	3 cut(s)	621, 735, 897
SduI	GDGCHC	1 cut(s)	346
SfaNI	GCATC	4 cut(s)	58, 213, 603, 616
SfcI	CTRYAG	1 cut(s)	282
SfuI	TTCGAA	2 cut(s)	207, 323
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	677
Sse9I	AATT	7 cut(s)	11, 30, 240, 334, 417, 851, 975
SsiI	CCGC	3 cut(s)	669, 831, 882
SspMI	CTAG	1 cut(s)	980
StyD4I	CCNGG	3 cut(s)	619, 733, 895
StyI	CCWWGG	1 cut(s)	788
TaaI	ACNGT	3 cut(s)	94, 124, 250
TaqI	TCGA	7 cut(s)	59, 207, 323, 338, 389, 427, 650
TasI	AATT	7 cut(s)	11, 30, 240, 334, 417, 851, 975
TatI	WGTACW	3 cut(s)	351, 410, 561
TauI	GCSGC	1 cut(s)	885
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	5 cut(s)	119, 141, 333, 795, 963
Tru9I	TTAA	5 cut(s)	119, 141, 333, 795, 963
TscAI	CASTG	2 cut(s)	140, 731
TseI	GCWGC	2 cut(s)	616, 772
TspDTI	ATGAA	5 cut(s)	253, 416, 667, 705, 881
TspGWI	ACGGA	2 cut(s)	542, 744
TspRI	CASTG	2 cut(s)	140, 731
VpaK11BI	GGWCC	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	333
XagI	CCTNNNNNAGG	1 cut(s)	217
XapI	RAATTY	2 cut(s)	851, 975
XceI	RCATGY	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	893
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	1 cut(s)	980
ZrmI	AGTACT	2 cut(s)	353, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.