Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009706

Physical Location & Seq

Genomic Coordinates Reverse (-)

54715922 .. 54717057

Gene Structure 1136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019640

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCAACCAAATTGGCACCGGAGCAAGTAATTCCTTCAGACGAGATCAAGCCTATGTCGATATCTGATGCGCCTGAAAACCAAAAAATGACTGTCGCCGAGAGGTGCAAGCTGATTTTAACGGTTGGGGAGCAGTGTATTAAAGAAGAAGAGCTTCGGAATCTGCTTGAACGCAAGCCTGACCCATCGCCTAAGACGGACTGGTTCGCGAAGATGAACAACAAAATGGGGGGTGACATGCAAAAGATTGAGACCGTGGGACACTACTTCATTGAGGTTTGGAAATCTATAGGAATGGACCTTGAAAAAGTGGAGTTTGTGTGGTCTTCGAAGGAGATTAATTCGAGGGCACATGAGTACTTGCCTCTTGTTATGGACATTGCAGGACGAAACTCGATAGAGACGATGAAGAGATGTACACAAATTATGGGTCGAGAAGCCGGTGATAACATGCCTTTAGCACAAGCCATGTACCCATGTATGCAATGTGCAGATGTATTCTTTTTTAAGGCTGACATCTGCCAAATGGGAACGGATCAACTCAAAGTGAACATGCTTGCAAGAGAGTACTACAATCAAATAGACAAGAAGGACAAGCCTGTGATCTTGTCGCATCGGATGCTGCCCGGCTTGAAGGAAGGGCAGAATAAGATGTCGAAAAGTGATGAGTCCTCCGCCATATTCATGGAAGATGATGAAGCCCAAGTGAACTTGAAAATCAAGAAAGCTCACTACGTTCCTGGAGAGGTCAAGGGCAATCCGTGTTTGGAGTATGTGCAGCACCTAATTTTCCCATGGTTTAATGAGTTTGTTGTGGAGCGAAGCGAAAAAAATGGCGGAGACATCACTTTCACAAACTTTGAAGAGCTGAGTAAGGCTTATGCAAGCGGCCAGCTTCATCCTGGCGACCTGAAACCGGCATTGGCGAAATCCTTGAACAAAATGTTGGAGCCGGTAAGATCACACTTTAAGAATGACCCGACTACAAAGCAACTACTACGAAGTGTGAAGAGCTTCAGAGTCACCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

344

Amino Acids

39.22

Weight (kDa)

6.68

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	67 - 317	2e-44	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47320 FvH4_6g47330
pyrus_communis	pycom06g08020
rosa_chinensis	RchiOBHm_Chr5g0057211 RchiOBHm_Chr6g0257261 RchiOBHm_Chr6g0275951
rosa_laevigata	RLG00000019640
rosa_multiflora	Rmu_sc0004043.1_g000002 Rmu_sc0009253.1_g000002 Rmu_sc0009253.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106350
rosa_rugosa	Rorug02G0522500
rosa_samantha	Rh2AG397200 Rh2CG383800 Rh4AG189900 Rh4DG188700 Rh6AG209300 Rh6BG213500 Rh6CG216500 Rh6DG205600
rosa_wichuraiana	Rw4G016200 Rw6G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AccII	CGCG	1 cut(s)	209
AciI	CCGC	3 cut(s)	675, 837, 888
AclWI	GGATC	1 cut(s)	543
AcoI	YGGCCR	1 cut(s)	889
AcuI	CTGAAG	2 cut(s)	21, 1000
AdeI	CACNNNGTG	1 cut(s)	1029
AfaI	GTAC	4 cut(s)	359, 418, 473, 569
AfiI	CCNNNNNNNGG	1 cut(s)	916
AgsI	TTSAA	6 cut(s)	170, 305, 634, 715, 863, 937
AjnI	CCWGG	3 cut(s)	739, 901, 1025
AjuI	GAANNNNNNNTTGG	4 cut(s)	905, 929, 937, 961
AluBI	AGCT	6 cut(s)	112, 154, 728, 868, 895, 1014
AluI	AGCT	6 cut(s)	112, 154, 728, 868, 895, 1014
Alw26I	GTCTC	3 cut(s)	245, 395, 834
AlwI	GGATC	1 cut(s)	543
AoxI	GGCC	1 cut(s)	889
ApeKI	GCWGC	2 cut(s)	622, 778
ArsI	GACNNNNNNTTYG	2 cut(s)	415, 447
AseI	ATTAAT	1 cut(s)	339
Asp700I	GAANNNNTTC	2 cut(s)	153, 1013
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	627
AsuHPI	GGTGA	3 cut(s)	245, 455, 1015
AsuII	TTCGAA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	609, 790
BccI	CCATC	1 cut(s)	193
BciT130I	CCWGG	3 cut(s)	741, 903, 1027
BcnI	CCSGG	1 cut(s)	627
BcoDI	GTCTC	3 cut(s)	245, 395, 834
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	3 cut(s)	623, 779, 889
BlsI	GCNGC	3 cut(s)	624, 780, 890
BmcAI	AGTACT	2 cut(s)	359, 569
Bme1390I	CCNGG	4 cut(s)	627, 741, 903, 1027
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	18, 951
BmrFI	CCNGG	4 cut(s)	627, 741, 903, 1027
BmsI	GCATC	3 cut(s)	58, 609, 622
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	762
Bpu14I	TTCGAA	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	627
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	255, 794
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	916
Bse118I	RCCGGY	3 cut(s)	440, 916, 952
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	2 cut(s)	378, 491
BseBI	CCWGG	3 cut(s)	741, 903, 1027
BseDI	CCNNGG	2 cut(s)	255, 794
BseGI	GGATG	2 cut(s)	624, 898
BseLI	CCNNNNNNNGG	1 cut(s)	916
BseMI	GCAATG	2 cut(s)	378, 491
BseMII	CTCAG	1 cut(s)	860
BseNI	ACTGG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	609, 790
BsgI	GTGCAG	2 cut(s)	510, 797
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	891
BshNI	GGYRCC	1 cut(s)	16
BsiSI	CCGG	5 cut(s)	20, 441, 627, 917, 953
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	916
BsmAI	GTCTC	3 cut(s)	245, 395, 834
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	891
Bso31I	GGTCTC	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	416
Bsp143I	GATC	4 cut(s)	45, 535, 603, 959
Bsp19I	CCATGG	1 cut(s)	794
Bsp68I	TCGCGA	1 cut(s)	209
BspACI	CCGC	3 cut(s)	675, 837, 888
BspANI	GGCC	1 cut(s)	891
BspCNI	CTCAG	1 cut(s)	861
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	18, 951
BspPI	GGATC	1 cut(s)	543
BspQI	GCTCTTC	3 cut(s)	144, 858, 1004
BspT104I	TTCGAA	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	2 cut(s)	378, 491
BsrFI	RCCGGY	3 cut(s)	440, 916, 952
BsrGI	TGTACA	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	3 cut(s)	440, 916, 952
BssECI	CCNNGG	2 cut(s)	255, 794
BssMI	GATC	4 cut(s)	45, 535, 603, 959
BssT1I	CCWWGG	1 cut(s)	794
Bst2UI	CCWGG	3 cut(s)	741, 903, 1027
Bst4CI	ACNGT	3 cut(s)	94, 124, 256
Bst6I	CTCTTC	4 cut(s)	144, 404, 858, 1004
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstAUI	TGTACA	1 cut(s)	416
BstBI	TTCGAA	1 cut(s)	329
BstC8I	GCNNGC	5 cut(s)	110, 176, 558, 886, 893
BstDEI	CTNAG	2 cut(s)	192, 869
BstDSI	CCRYGG	2 cut(s)	255, 794
BstF5I	GGATG	2 cut(s)	624, 898
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	4 cut(s)	48, 538, 606, 962
BstMAI	GTCTC	3 cut(s)	245, 395, 834
BstMBI	GATC	4 cut(s)	45, 535, 603, 959
BstMWI	GCNNNNNNNGC	1 cut(s)	619
BstNI	CCWGG	3 cut(s)	741, 903, 1027
BstNSI	RCATGY	3 cut(s)	241, 454, 556
BstSCI	CCNGG	4 cut(s)	625, 739, 901, 1025
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	352
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	609, 790
BstV2I	GAAGAC	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	685
BsuRI	GGCC	1 cut(s)	891
BtgI	CCRYGG	2 cut(s)	255, 794
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	624, 898
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
BtuMI	TCGCGA	1 cut(s)	209
Cac8I	GCNNGC	5 cut(s)	110, 176, 558, 886, 893
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	3 cut(s)	440, 916, 952
Cfr13I	GGNCC	1 cut(s)	298
CsiI	ACCWGGT	1 cut(s)	1025
Csp6I	GTAC	4 cut(s)	358, 417, 472, 568
CviAII	CATG	8 cut(s)	238, 353, 451, 469, 477, 553, 685, 795
CviQI	GTAC	4 cut(s)	358, 417, 472, 568
DdeI	CTNAG	2 cut(s)	192, 869
DpnI	GATC	4 cut(s)	47, 537, 605, 961
DpnII	GATC	4 cut(s)	45, 535, 603, 959
DraIII	CACNNNGTG	1 cut(s)	1029
EaeI	YGGCCR	1 cut(s)	889
Eam1104I	CTCTTC	4 cut(s)	144, 404, 858, 1004
EarI	CTCTTC	4 cut(s)	144, 404, 858, 1004
EciI	GGCGGA	2 cut(s)	664, 852
Eco130I	CCWWGG	1 cut(s)	794
Eco31I	GGTCTC	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	2 cut(s)	21, 1000
EcoRII	CCWGG	3 cut(s)	739, 901, 1025
EcoRV	GATATC	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	794
ErhI	CCWWGG	1 cut(s)	794
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	8 cut(s)	241, 356, 454, 472, 480, 556, 688, 798
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	8 cut(s)	237, 352, 450, 468, 476, 552, 684, 794
Fnu4HI	GCNGC	3 cut(s)	623, 779, 889
FokI	GGATG	2 cut(s)	631, 885
Fsp4HI	GCNGC	3 cut(s)	623, 779, 889
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	3 cut(s)	623, 779, 889
GsuI	CTGGAG	1 cut(s)	762
HaeIII	GGCC	1 cut(s)	891
HapII	CCGG	5 cut(s)	20, 441, 627, 917, 953
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	8 cut(s)	241, 356, 454, 472, 480, 556, 688, 798
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	3 cut(s)	160, 668, 1020
HpaII	CCGG	5 cut(s)	20, 441, 627, 917, 953
HphI	GGTGA	3 cut(s)	245, 455, 1015
Hpy166II	GTNNAC	3 cut(s)	419, 550, 709
Hpy188I	TCNGA	5 cut(s)	40, 67, 159, 618, 1019
Hpy188III	TCNNGA	3 cut(s)	208, 434, 721
Hpy8I	GTNNAC	3 cut(s)	419, 550, 709
HpyAV	CCTTC	5 cut(s)	45, 325, 583, 628, 632
HpyCH4III	ACNGT	3 cut(s)	94, 124, 256
HpyCH4IV	ACGT	1 cut(s)	735
HpyCH4V	TGCA	8 cut(s)	108, 241, 383, 484, 491, 560, 778, 884
HpyF10VI	GCNNNNNNNGC	1 cut(s)	619
HpyF3I	CTNAG	2 cut(s)	192, 869
HpySE526I	ACGT	1 cut(s)	735
Hsp92II	CATG	8 cut(s)	241, 356, 454, 472, 480, 556, 688, 798
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	4 cut(s)	45, 535, 603, 959
LguI	GCTCTTC	3 cut(s)	144, 858, 1004
LmnI	GCTCC	4 cut(s)	22, 130, 817, 949
Lsp1109I	GCAGC	2 cut(s)	609, 790
LweI	GCATC	3 cut(s)	58, 609, 622
MabI	ACCWGGT	1 cut(s)	1025
MaeII	ACGT	1 cut(s)	735
MaeIII	GTNAC	2 cut(s)	233, 1021
MalI	GATC	4 cut(s)	47, 537, 605, 961
MboI	GATC	4 cut(s)	45, 535, 603, 959
MboII	GAAGA	8 cut(s)	158, 161, 223, 318, 421, 701, 875, 1021
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	5 cut(s)	11, 30, 340, 423, 786
MlyI	GAGTC	2 cut(s)	677, 1029
MmeI	TCCRAC	1 cut(s)	927
MnlI	CCTC	6 cut(s)	96, 268, 339, 375, 682, 739
MroXI	GAANNNNTTC	2 cut(s)	153, 1013
MseI	TTAA	6 cut(s)	119, 141, 339, 507, 801, 969
MslI	CAYNNNNRTG	1 cut(s)	683
MspI	CCGG	5 cut(s)	20, 441, 627, 917, 953
MspR9I	CCNGG	4 cut(s)	627, 741, 903, 1027
MvaI	CCWGG	3 cut(s)	741, 903, 1027
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	619
NciI	CCSGG	1 cut(s)	627
NcoI	CCATGG	1 cut(s)	794
NdeII	GATC	4 cut(s)	45, 535, 603, 959
NlaIII	CATG	8 cut(s)	241, 356, 454, 472, 480, 556, 688, 798
NlaIV	GGNNCC	2 cut(s)	18, 951
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	233, 1021
NruI	TCGCGA	1 cut(s)	209
NspI	RCATGY	3 cut(s)	241, 454, 556
NspV	TTCGAA	1 cut(s)	329
PciSI	GCTCTTC	3 cut(s)	144, 858, 1004
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PdmI	GAANNNNTTC	2 cut(s)	153, 1013
PfeI	GAWTC	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	739
PkrI	GCNGC	3 cut(s)	624, 780, 890
PleI	GAGTC	2 cut(s)	676, 1028
PpsI	GAGTC	2 cut(s)	676, 1028
PshBI	ATTAAT	1 cut(s)	339
Psp6I	CCWGG	3 cut(s)	739, 901, 1025
PspGI	CCWGG	3 cut(s)	739, 901, 1025
PspN4I	GGNNCC	2 cut(s)	18, 951
PspPI	GGNCC	1 cut(s)	298
RruI	TCGCGA	1 cut(s)	209
RsaI	GTAC	4 cut(s)	359, 418, 473, 569
RsaNI	GTAC	4 cut(s)	358, 417, 472, 568
RseI	CAYNNNNRTG	1 cut(s)	683
SapI	GCTCTTC	3 cut(s)	144, 858, 1004
SaqAI	TTAA	6 cut(s)	119, 141, 339, 507, 801, 969
SatI	GCNGC	3 cut(s)	623, 779, 889
Sau3AI	GATC	4 cut(s)	45, 535, 603, 959
Sau96I	GGNCC	1 cut(s)	298
ScaI	AGTACT	2 cut(s)	359, 569
SchI	GAGTC	2 cut(s)	677, 1029
ScrFI	CCNGG	4 cut(s)	627, 741, 903, 1027
SduI	GDGCHC	1 cut(s)	352
SexAI	ACCWGGT	1 cut(s)	1025
SfaNI	GCATC	3 cut(s)	58, 609, 622
SfcI	CTRYAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	329
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	683
Sse9I	AATT	5 cut(s)	11, 30, 340, 423, 786
SsiI	CCGC	3 cut(s)	675, 837, 888
StyD4I	CCNGG	4 cut(s)	625, 739, 901, 1025
StyI	CCWWGG	1 cut(s)	794
TaaI	ACNGT	3 cut(s)	94, 124, 256
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	6 cut(s)	59, 329, 344, 395, 433, 656
TasI	AATT	5 cut(s)	11, 30, 340, 423, 786
TatI	WGTACW	3 cut(s)	357, 416, 567
TauI	GCSGC	1 cut(s)	891
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	6 cut(s)	119, 141, 339, 507, 801, 969
Tru9I	TTAA	6 cut(s)	119, 141, 339, 507, 801, 969
TscAI	CASTG	1 cut(s)	140
TseFI	GTSAC	2 cut(s)	233, 1021
TseI	GCWGC	2 cut(s)	622, 778
Tsp45I	GTSAC	2 cut(s)	233, 1021
TspDTI	ATGAA	6 cut(s)	230, 259, 422, 673, 711, 887
TspGWI	ACGGA	3 cut(s)	212, 548, 750
TspRI	CASTG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	298
VspI	ATTAAT	1 cut(s)	339
XceI	RCATGY	3 cut(s)	241, 454, 556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	899
XmnI	GAANNNNTTC	2 cut(s)	153, 1013
ZrmI	AGTACT	2 cut(s)	359, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.