Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009253.1

Orthogroup ID

OG0009706

Physical Location & Seq

Genomic Coordinates Reverse (-)

7098 .. 8093

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009253.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atggcaaccaaattggcaccggagcaagtaattccttcagacgagatcaagtctatgtcgatatccgatgcgcctaaagaccaacaaatgactgttgacgagaggtgcgagctgattttaaccgttggggagcagtgtattgaagtagacgagcttcggaatctgcttgaacgcaagcctgaacccatcgcctacgacgggttcgaaccctcgggcaggatgcacattgctcagggagttatgaaagcaatcaacgtgaacaagctcacgaaagccggctgcagggtgaagattttgattgcagactggttcgcgaagatgaacaacaaaatggggggtgacatgcaaaagattgagaccgtgggacactacttcattgaggtttggaaatctataggaatggaccttgaaaaagtagagtttgtgtggtcttcgaaggagattaattcgagggcacatgagtacttgcctcttgttatggacattgcaggacgaaactcgatagagaggatgaagagatgtacacaaattatgggtcgagaagccggtgataacatgcctttagcacaagccatgtacccatgtatgcaatgtgcagatgtattctttttgaaggctgacatctgccaaatgggaacggatcaacgcaaagtgaacatgcttgcgagagagtactgcaatcaaatacagaagaaggacaagcctgtgatcttgtcgcatcggatgctgcccggcttgaaggaagggcagaataagatgtcgaaaagtgatgagtcctccgccatattcatggaagatgatgaagcccaagtgaacttgaaaatcaagaaagcttactgcgttcccggagaggtcaagggcaatccgtgtttggagtatgtgcagcacctgattttcccatggtttaatgagtttgttgtggagcgaagtgaaaaaaatggcggagacatcactttcacaaactttgaagagcggcttgaaggaagggcagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

331

Amino Acids

37.76

Weight (kDa)

5.52

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47320 FvH4_6g47330
pyrus_communis	pycom06g08020
rosa_chinensis	RchiOBHm_Chr5g0057211 RchiOBHm_Chr6g0257261 RchiOBHm_Chr6g0275951
rosa_laevigata	RLG00000019640
rosa_multiflora	Rmu_sc0004043.1_g000002 Rmu_sc0009253.1_g000002 Rmu_sc0009253.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106350
rosa_rugosa	Rorug02G0522500
rosa_samantha	Rh2AG397200 Rh2CG383800 Rh4AG189900 Rh4DG188700 Rh6AG209300 Rh6BG213500 Rh6CG216500 Rh6DG205600
rosa_wichuraiana	Rw4G016200 Rw6G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AccBSI	CCGCTC	1 cut(s)	973
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	314
AciI	CCGC	3 cut(s)	780, 942, 973
AclWI	GGATC	1 cut(s)	648
AcuI	CTGAAG	1 cut(s)	21
AfaI	GTAC	4 cut(s)	464, 523, 578, 674
AfiI	CCNNNNNNNGG	3 cut(s)	198, 216, 282
AgsI	TTSAA	8 cut(s)	143, 170, 410, 613, 739, 820, 968, 980
AluBI	AGCT	4 cut(s)	112, 154, 265, 833
AluI	AGCT	4 cut(s)	112, 154, 265, 833
Alw26I	GTCTC	2 cut(s)	350, 939
AlwI	GGATC	1 cut(s)	648
AlwNI	CAGNNNCTG	1 cut(s)	889
Ama87I	CYCGRG	1 cut(s)	211
ApeKI	GCWGC	3 cut(s)	279, 727, 883
ArsI	GACNNNNNNTTYG	2 cut(s)	520, 552
AseI	ATTAAT	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	403
AsuC2I	CCSGG	2 cut(s)	732, 846
AsuHPI	GGTGA	3 cut(s)	298, 350, 560
AsuII	TTCGAA	2 cut(s)	204, 434
AvaI	CYCGRG	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	403
BaeGI	GKGCMC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	138, 170
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	266, 714, 895
BccI	CCATC	1 cut(s)	194
BcnI	CCSGG	2 cut(s)	732, 846
BcoDI	GTCTC	2 cut(s)	350, 939
BfmI	CTRYAG	2 cut(s)	280, 393
BisI	GCNGC	4 cut(s)	280, 728, 884, 974
BlsI	GCNGC	4 cut(s)	281, 729, 885, 975
BmcAI	AGTACT	2 cut(s)	464, 674
Bme1390I	CCNGG	2 cut(s)	732, 846
Bme18I	GGWCC	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	732, 846
BmsI	GCATC	4 cut(s)	58, 210, 714, 727
BpiI	GAAGAC	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	231
Bpu14I	TTCGAA	2 cut(s)	204, 434
BpuMI	CCSGG	2 cut(s)	732, 846
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	3 cut(s)	210, 360, 899
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 216, 282
Bse118I	RCCGGY	2 cut(s)	275, 545
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	3 cut(s)	225, 483, 596
BseDI	CCNNGG	3 cut(s)	210, 360, 899
BseGI	GGATG	3 cut(s)	225, 516, 729
BseLI	CCNNNNNNNGG	3 cut(s)	198, 216, 282
BseMI	GCAATG	3 cut(s)	225, 483, 596
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	457
BseXI	GCAGC	3 cut(s)	266, 714, 895
BsgI	GTGCAG	2 cut(s)	615, 902
Bsh1236I	CGCG	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	5 cut(s)	20, 276, 546, 732, 846
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	3 cut(s)	198, 216, 282
BsmAI	GTCTC	2 cut(s)	350, 939
BsmFI	GGGAC	1 cut(s)	378
Bso31I	GGTCTC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	211
Bsp119I	TTCGAA	2 cut(s)	204, 434
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp1407I	TGTACA	1 cut(s)	521
Bsp143I	GATC	3 cut(s)	45, 640, 708
Bsp19I	CCATGG	1 cut(s)	899
Bsp68I	TCGCGA	1 cut(s)	314
BspACI	CCGC	3 cut(s)	780, 942, 973
BspCNI	CTCAG	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	284
BspPI	GGATC	1 cut(s)	648
BspQI	GCTCTTC	1 cut(s)	963
BspT104I	TTCGAA	2 cut(s)	204, 434
BspT107I	GGYRCC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	973
BsrDI	GCAATG	3 cut(s)	225, 483, 596
BsrFI	RCCGGY	2 cut(s)	275, 545
BsrGI	TGTACA	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	2 cut(s)	275, 545
BssECI	CCNNGG	3 cut(s)	210, 360, 899
BssMI	GATC	3 cut(s)	45, 640, 708
BssT1I	CCWWGG	1 cut(s)	899
Bst4CI	ACNGT	3 cut(s)	94, 124, 361
Bst6I	CTCTTC	2 cut(s)	509, 963
BstAPI	GCANNNNNTGC	1 cut(s)	724
BstAUI	TGTACA	1 cut(s)	521
BstBI	TTCGAA	2 cut(s)	204, 434
BstC8I	GCNNGC	4 cut(s)	110, 176, 277, 663
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	2 cut(s)	360, 899
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstF5I	GGATG	3 cut(s)	225, 516, 729
BstFNI	CGCG	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	3 cut(s)	48, 643, 711
BstMAI	GTCTC	2 cut(s)	350, 939
BstMBI	GATC	3 cut(s)	45, 640, 708
BstMWI	GCNNNNNNNGC	1 cut(s)	724
BstNSI	RCATGY	3 cut(s)	346, 559, 661
BstSCI	CCNGG	2 cut(s)	730, 844
BstSFI	CTRYAG	2 cut(s)	280, 393
BstSLI	GKGCMC	1 cut(s)	457
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	3 cut(s)	266, 714, 895
BstV2I	GAAGAC	1 cut(s)	423
BstXI	CCANNNNNNTGG	1 cut(s)	790
BtgI	CCRYGG	2 cut(s)	360, 899
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	3 cut(s)	225, 516, 729
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
BtuMI	TCGCGA	1 cut(s)	314
Cac8I	GCNNGC	4 cut(s)	110, 176, 277, 663
CaiI	CAGNNNCTG	1 cut(s)	889
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	2 cut(s)	275, 545
Cfr13I	GGNCC	1 cut(s)	403
Csp6I	GTAC	4 cut(s)	463, 522, 577, 673
CviAII	CATG	8 cut(s)	343, 458, 556, 574, 582, 658, 790, 900
CviQI	GTAC	4 cut(s)	463, 522, 577, 673
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	3 cut(s)	47, 642, 710
DpnII	GATC	3 cut(s)	45, 640, 708
Eam1104I	CTCTTC	2 cut(s)	509, 963
EarI	CTCTTC	2 cut(s)	509, 963
EciI	GGCGGA	2 cut(s)	769, 957
Eco130I	CCWWGG	1 cut(s)	899
Eco31I	GGTCTC	1 cut(s)	350
Eco32I	GATATC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	211
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoRV	GATATC	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	899
ErhI	CCWWGG	1 cut(s)	899
FaeI	CATG	8 cut(s)	346, 461, 559, 577, 585, 661, 793, 903
FalI	AAGNNNNNCTT	2 cut(s)	960, 992
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	8 cut(s)	342, 457, 555, 573, 581, 657, 789, 899
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	280, 728, 884, 974
FokI	GGATG	3 cut(s)	232, 523, 736
Fsp4HI	GCNGC	4 cut(s)	280, 728, 884, 974
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	4 cut(s)	280, 728, 884, 974
HapII	CCGG	5 cut(s)	20, 276, 546, 732, 846
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	8 cut(s)	346, 461, 559, 577, 585, 661, 793, 903
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	2 cut(s)	160, 773
HpaII	CCGG	5 cut(s)	20, 276, 546, 732, 846
HphI	GGTGA	3 cut(s)	298, 350, 560
Hpy166II	GTNNAC	6 cut(s)	97, 148, 259, 524, 655, 814
Hpy188I	TCNGA	4 cut(s)	40, 67, 159, 723
Hpy188III	TCNNGA	4 cut(s)	268, 313, 539, 826
Hpy8I	GTNNAC	6 cut(s)	97, 148, 259, 524, 655, 814
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	8 cut(s)	45, 430, 607, 688, 733, 737, 974, 978
HpyCH4III	ACNGT	3 cut(s)	94, 124, 361
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	9 cut(s)	223, 282, 302, 346, 488, 589, 596, 678, 883
HpyF10VI	GCNNNNNNNGC	1 cut(s)	724
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	8 cut(s)	346, 461, 559, 577, 585, 661, 793, 903
HspAI	GCGC	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	45, 640, 708
LguI	GCTCTTC	1 cut(s)	963
LmnI	GCTCC	3 cut(s)	22, 130, 922
Lsp1109I	GCAGC	3 cut(s)	266, 714, 895
LweI	GCATC	4 cut(s)	58, 210, 714, 727
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	3 cut(s)	47, 642, 710
MbiI	CCGCTC	1 cut(s)	973
MboI	GATC	3 cut(s)	45, 640, 708
MboII	GAAGA	7 cut(s)	301, 328, 423, 526, 703, 806, 980
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	4 cut(s)	11, 30, 445, 528
MlyI	GAGTC	1 cut(s)	782
MnlI	CCTC	8 cut(s)	96, 220, 373, 444, 480, 501, 787, 844
MroNI	GCCGGC	1 cut(s)	275
MseI	TTAA	3 cut(s)	119, 444, 906
MslI	CAYNNNNRTG	1 cut(s)	788
MspI	CCGG	5 cut(s)	20, 276, 546, 732, 846
MspR9I	CCNGG	2 cut(s)	732, 846
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	724
NaeI	GCCGGC	1 cut(s)	277
NciI	CCSGG	2 cut(s)	732, 846
NcoI	CCATGG	1 cut(s)	899
NdeII	GATC	3 cut(s)	45, 640, 708
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	8 cut(s)	346, 461, 559, 577, 585, 661, 793, 903
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	338
NruI	TCGCGA	1 cut(s)	314
NspI	RCATGY	3 cut(s)	346, 559, 661
NspV	TTCGAA	2 cut(s)	204, 434
PciSI	GCTCTTC	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 201
PdiI	GCCGGC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	844
PkrI	GCNGC	4 cut(s)	281, 729, 885, 975
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
PshBI	ATTAAT	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	403
PstI	CTGCAG	1 cut(s)	284
PstNI	CAGNNNCTG	1 cut(s)	889
RruI	TCGCGA	1 cut(s)	314
RsaI	GTAC	4 cut(s)	464, 523, 578, 674
RsaNI	GTAC	4 cut(s)	463, 522, 577, 673
RseI	CAYNNNNRTG	1 cut(s)	788
SapI	GCTCTTC	1 cut(s)	963
SaqAI	TTAA	3 cut(s)	119, 444, 906
SatI	GCNGC	4 cut(s)	280, 728, 884, 974
Sau3AI	GATC	3 cut(s)	45, 640, 708
Sau96I	GGNCC	1 cut(s)	403
ScaI	AGTACT	2 cut(s)	464, 674
SchI	GAGTC	1 cut(s)	782
ScrFI	CCNGG	2 cut(s)	732, 846
SduI	GDGCHC	1 cut(s)	457
SfaNI	GCATC	4 cut(s)	58, 210, 714, 727
SfcI	CTRYAG	2 cut(s)	280, 393
SfuI	TTCGAA	2 cut(s)	204, 434
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	788
Sse9I	AATT	4 cut(s)	11, 30, 445, 528
SsiI	CCGC	3 cut(s)	780, 942, 973
StyD4I	CCNGG	2 cut(s)	730, 844
StyI	CCWWGG	1 cut(s)	899
TaaI	ACNGT	3 cut(s)	94, 124, 361
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	7 cut(s)	59, 204, 434, 449, 500, 538, 761
TasI	AATT	4 cut(s)	11, 30, 445, 528
TatI	WGTACW	3 cut(s)	462, 521, 672
TauI	GCSGC	1 cut(s)	976
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	3 cut(s)	119, 444, 906
Tru9I	TTAA	3 cut(s)	119, 444, 906
TscAI	CASTG	1 cut(s)	140
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	3 cut(s)	279, 727, 883
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	6 cut(s)	257, 335, 364, 527, 778, 816
TspGWI	ACGGA	2 cut(s)	653, 855
TspRI	CASTG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	403
VspI	ATTAAT	1 cut(s)	444
XagI	CCTNNNNNAGG	1 cut(s)	214
XceI	RCATGY	3 cut(s)	346, 559, 661
XmiI	GTMKAC	1 cut(s)	147
ZrmI	AGTACT	2 cut(s)	464, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.