Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009253.1

Orthogroup ID

OG0009706

Physical Location & Seq

Genomic Coordinates Reverse (-)

6419 .. 7063

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009253.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggaagatgatgaagcccaagtgaacttgaaaatcaagaaagctcactgcgttcccggagaggtcaagggcaatccgtgtttggagtatgtgcagcacctgattttcccatggtttaatgagtttgttgtggagcgaagcgaaaaaaatggcggagacatcactttcacaaactttgaagagctgagtttcccacagggaaatccgatttccgatagcgaatatattccctattcccttaaggaagagtttgttgtggagcgaagtgaaaaaaatggcggagacatcactttcacaaactttgaagagctgagtaaggcttatgcaagcggccagcttcatcctggcgacctgaaaccggcattggcgaaatccttgaacaaaatgttggagccggtaagatcacactttatgaatgacccgactgctaagcagctactacgaagtgtgaagagcttcagagtcaccaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

157

Amino Acids

17.88

Weight (kDa)

5.43

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47320 FvH4_6g47330
pyrus_communis	pycom06g08020
rosa_chinensis	RchiOBHm_Chr5g0057211 RchiOBHm_Chr6g0257261 RchiOBHm_Chr6g0275951
rosa_laevigata	RLG00000019640
rosa_multiflora	Rmu_sc0004043.1_g000002 Rmu_sc0009253.1_g000002 Rmu_sc0009253.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106350
rosa_rugosa	Rorug02G0522500
rosa_samantha	Rh2AG397200 Rh2CG383800 Rh4AG189900 Rh4DG188700 Rh6AG209300 Rh6BG213500 Rh6CG216500 Rh6DG205600
rosa_wichuraiana	Rw4G016200 Rw6G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	153, 279, 330
AcoI	YGGCCR	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	442
AdeI	CACNNNGTG	1 cut(s)	471
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	4 cut(s)	31, 179, 305, 379
AjnI	CCWGG	2 cut(s)	343, 467
AjuI	GAANNNNNNNTTGG	4 cut(s)	347, 371, 379, 403
AluBI	AGCT	6 cut(s)	44, 184, 310, 337, 436, 456
AluI	AGCT	6 cut(s)	44, 184, 310, 337, 436, 456
Alw26I	GTCTC	2 cut(s)	150, 276
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	2 cut(s)	94, 433
Asp700I	GAANNNNTTC	2 cut(s)	225, 455
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	106, 445
BciT130I	CCWGG	2 cut(s)	345, 469
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	150, 276
BfrI	CTTAAG	1 cut(s)	239
BisI	GCNGC	3 cut(s)	95, 331, 434
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	3 cut(s)	96, 332, 435
Bme1390I	CCNGG	3 cut(s)	57, 345, 469
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	3 cut(s)	57, 345, 469
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse118I	RCCGGY	2 cut(s)	358, 394
BseBI	CCWGG	2 cut(s)	345, 469
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	176, 302
BseXI	GCAGC	2 cut(s)	106, 445
BsgI	GTGCAG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	333
BsiSI	CCGG	3 cut(s)	57, 359, 395
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	150, 276
BsnI	GGCC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	401
Bsp1720I	GCTNAGC	1 cut(s)	429
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	3 cut(s)	153, 279, 330
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	2 cut(s)	177, 303
BspLI	GGNNCC	1 cut(s)	393
BspQI	GCTCTTC	3 cut(s)	174, 300, 446
BspTI	CTTAAG	1 cut(s)	239
BsrFI	RCCGGY	2 cut(s)	358, 394
BssAI	RCCGGY	2 cut(s)	358, 394
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	2 cut(s)	345, 469
Bst6I	CTCTTC	4 cut(s)	174, 240, 300, 446
BstAFI	CTTAAG	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	328, 335
BstDEI	CTNAG	3 cut(s)	185, 311, 429
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	404
BstMAI	GTCTC	2 cut(s)	150, 276
BstMBI	GATC	1 cut(s)	401
BstNI	CCWGG	2 cut(s)	345, 469
BstSCI	CCNGG	3 cut(s)	55, 343, 467
BstV1I	GCAGC	2 cut(s)	106, 445
BsuRI	GGCC	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	328, 335
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr10I	RCCGGY	2 cut(s)	358, 394
CsiI	ACCWGGT	1 cut(s)	467
CviAII	CATG	1 cut(s)	111
DdeI	CTNAG	3 cut(s)	185, 311, 429
DpnI	GATC	1 cut(s)	403
DpnII	GATC	1 cut(s)	401
DraIII	CACNNNGTG	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	4 cut(s)	174, 240, 300, 446
EarI	CTCTTC	4 cut(s)	174, 240, 300, 446
EciI	GGCGGA	2 cut(s)	168, 294
Eco130I	CCWWGG	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	343, 467
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	1 cut(s)	114
FaiI	YATR	5 cut(s)	90, 112, 225, 324, 413
FatI	CATG	1 cut(s)	110
Fnu4HI	GCNGC	3 cut(s)	95, 331, 434
FokI	GGATG	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	95, 331, 434
GluI	GCNGC	3 cut(s)	95, 331, 434
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	3 cut(s)	57, 359, 395
Hin1II	CATG	1 cut(s)	114
HinfI	GANTC	1 cut(s)	462
HpaII	CCGG	3 cut(s)	57, 359, 395
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	207, 214, 461
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	94, 326
HpyF3I	CTNAG	3 cut(s)	185, 311, 429
Hsp92II	CATG	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	401
LguI	GCTCTTC	3 cut(s)	174, 300, 446
LmnI	GCTCC	3 cut(s)	133, 259, 391
Lsp1109I	GCAGC	2 cut(s)	106, 445
MabI	ACCWGGT	1 cut(s)	467
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	1 cut(s)	403
MboI	GATC	1 cut(s)	401
MboII	GAAGA	5 cut(s)	17, 191, 257, 317, 463
MlyI	GAGTC	1 cut(s)	471
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	1 cut(s)	55
MroXI	GAANNNNTTC	2 cut(s)	225, 455
MseI	TTAA	2 cut(s)	117, 240
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	3 cut(s)	57, 359, 395
MspR9I	CCNGG	3 cut(s)	57, 345, 469
MvaI	CCWGG	2 cut(s)	345, 469
NciI	CCSGG	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	1 cut(s)	401
NlaIII	CATG	1 cut(s)	114
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	463
PciSI	GCTCTTC	3 cut(s)	174, 300, 446
PdmI	GAANNNNTTC	2 cut(s)	225, 455
PfoI	TCCNGGA	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	96, 332, 435
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
Psp6I	CCWGG	2 cut(s)	343, 467
PspGI	CCWGG	2 cut(s)	343, 467
PspN4I	GGNNCC	1 cut(s)	393
PstNI	CAGNNNCTG	1 cut(s)	100
SapI	GCTCTTC	3 cut(s)	174, 300, 446
SaqAI	TTAA	2 cut(s)	117, 240
SatI	GCNGC	3 cut(s)	95, 331, 434
Sau3AI	GATC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	3 cut(s)	57, 345, 469
SexAI	ACCWGGT	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SsiI	CCGC	3 cut(s)	153, 279, 330
StyD4I	CCNGG	3 cut(s)	55, 343, 467
StyI	CCWWGG	1 cut(s)	110
TauI	GCSGC	1 cut(s)	333
Tru1I	TTAA	2 cut(s)	117, 240
Tru9I	TTAA	2 cut(s)	117, 240
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	2 cut(s)	94, 433
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	3 cut(s)	27, 329, 428
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	53
Vha464I	CTTAAG	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmnI	GAANNNNTTC	2 cut(s)	225, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.