FvH4_6g47773

Cell division topological specificity factor homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016378
Physical Location & Seq
Forward (+)
36145148 .. 36146997
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47773.t1

Sequence Viewer

Length: 696 bp
ATGGCGGTTTCTAGGGATTTTGGTATCTCTGCGGCATTGGGTTCTTGTCCTTTTAAGCACCACCGCCTGGGAAGCTCTTTCCAACCTTCTAAGGTAACCTTTAAGGGTTGTTATGGTGGAGGATTAGGTAGCACATGGGAGATGACACAACCAACCTGCTTAAATTCAAAAGGTTTCAAGTCTAACTGTCTCTATAACCAATCGTTCGAGATTGCAAAAGACAGTGAACTTATTCCTGAACCTGTAAGCCAAGAAACAGAAGGCTTTCTTCTTGATGCTATCAATATGAGCTTCTTTGAGCGTCTAAACTTGGCATGGAAGATAATGTTTCCTTCACCATCGACTAGAAGAAATTCCAATGCAAAGATTGCCAAGCAACGCTTGCAGATGATCCTGTTATCTGATCGATGTGCAGTAACTGATGGTGCAAAGCAGAAAATTGTGAGCAACATTGTGGGCGCTCTATCTGACTTTGTGGAGATAGACTCACAGGACAAAGTCCAGCTTAGCGTCTCAGCAGATTCAGAAACAGGCACAGTCTACTCTGTGACAGTTCCTGTTCGGCGCGTGAAGCCTGAACATCAAGCCGTGGATGAGCTTGGCGCCATGACAAATGTTGAGTACAAGGATACCGGGATGTCATCAAATTCTGTTGATGTTAAGTTTGATTTCTACATCCCTAAGAAGTCTGCGTAG

Protein Analysis

232

Amino Acids

25.4

Weight (kDa)

7.6

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MinE PF03776 121 - 188 2.3e-13 Septum formation topological specificity factor MinE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016378)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g47773
malus_domestica MD09G1057200.v1.1
prunus_persica Prupe.3G261900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0166971
rosa_laevigata RLG00000021685
rosa_multiflora Rmu_sc0002735.1_g000025 Rmu_sc0010966.1_g000001 Rmu_sc0025421.1_g000002
rosa_roxburghii Rroxscaffold_2G00083900
rosa_rugosa Rorug02G0527000
rosa_samantha Rh2AG593900 Rh2BG605400 Rh2CG576300 Rh2DG616900
rosa_wichuraiana Rw2G049450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 67
AccI GTMKAC 1 cut(s) 540
AccII CGCG 1 cut(s) 567
AciI CCGC 3 cut(s) 5, 32, 64
AclWI GGATC 1 cut(s) 385
AcsI RAATTY 3 cut(s) 163, 352, 646
AcyI GRCGYC 1 cut(s) 603
AfaI GTAC 1 cut(s) 623
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 2 cut(s) 168, 178
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 4 cut(s) 75, 291, 505, 598
AluI AGCT 4 cut(s) 75, 291, 505, 598
Alw26I GTCTC 2 cut(s) 194, 517
AlwI GGATC 1 cut(s) 385
AlwNI CAGNNNCTG 2 cut(s) 419, 557
ApoI RAATTY 3 cut(s) 163, 352, 646
Asp700I GAANNNNTTC 3 cut(s) 231, 264, 352
AspLEI GCGC 3 cut(s) 461, 567, 605
AsuC2I CCSGG 1 cut(s) 634
AsuHPI GGTGA 1 cut(s) 327
BanI GGYRCC 1 cut(s) 602
BccI CCATC 2 cut(s) 346, 416
BceAI ACGGC 1 cut(s) 572
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 622
BcnI CCSGG 1 cut(s) 634
BcoDI GTCTC 2 cut(s) 194, 517
BfaI CTAG 2 cut(s) 12, 345
BfoI RGCGCY 2 cut(s) 462, 606
BfuAI ACCTGC 1 cut(s) 164
BfuI GTATCC 1 cut(s) 622
BisI GCNGC 1 cut(s) 33
BlpI GCTNAGC 1 cut(s) 506
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 2 cut(s) 68, 634
BmiI GGNNCC 1 cut(s) 604
BmrFI CCNGG 2 cut(s) 68, 634
BmsI GCATC 1 cut(s) 265
BplI GAGNNNNNCTC 2 cut(s) 470, 502
Bpu1102I GCTNAGC 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 634
Bsa29I ATCGAT 1 cut(s) 406
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 67, 588
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 406
BseDI CCNNGG 2 cut(s) 67, 588
BseGI GGATG 3 cut(s) 598, 642, 675
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 528
BsgI GTGCAG 1 cut(s) 432
Bsh1236I CGCG 1 cut(s) 567
BshNI GGYRCC 1 cut(s) 602
BshVI ATCGAT 1 cut(s) 406
BsiSI CCGG 1 cut(s) 633
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 194, 517
BsmBI CGTCTC 1 cut(s) 517
Bsp143I GATC 2 cut(s) 390, 403
Bsp1720I GCTNAGC 1 cut(s) 506
BspACI CCGC 3 cut(s) 5, 32, 64
BspCNI CTCAG 1 cut(s) 527
BspDI ATCGAT 1 cut(s) 406
BspFNI CGCG 1 cut(s) 567
BspLI GGNNCC 1 cut(s) 604
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 385
BspT107I GGYRCC 1 cut(s) 602
BssECI CCNNGG 2 cut(s) 67, 588
BssMI GATC 2 cut(s) 390, 403
BssNI GRCGYC 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 4 cut(s) 188, 224, 538, 553
BstACI GRCGYC 1 cut(s) 603
BstAPI GCANNNNNTGC 2 cut(s) 368, 382
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 4 cut(s) 90, 506, 514, 681
BstDSI CCRYGG 1 cut(s) 588
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 3 cut(s) 598, 642, 675
BstFNI CGCG 1 cut(s) 567
BstH2I RGCGCY 2 cut(s) 462, 606
BstHHI GCGC 3 cut(s) 461, 567, 605
BstKTI GATC 2 cut(s) 393, 406
BstMAI GTCTC 2 cut(s) 194, 517
BstMBI GATC 2 cut(s) 390, 403
BstMWI GCNNNNNNNGC 4 cut(s) 72, 368, 382, 571
BstNI CCWGG 1 cut(s) 68
BstPI GGTNACC 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 66, 632
BstUI CGCG 1 cut(s) 567
Bsu15I ATCGAT 1 cut(s) 406
BsuI GTATCC 1 cut(s) 622
BsuTUI ATCGAT 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 3 cut(s) 598, 642, 675
BtsIMutI CAGTG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 383
CaiI CAGNNNCTG 2 cut(s) 419, 557
CfoI GCGC 3 cut(s) 461, 567, 605
ClaI ATCGAT 1 cut(s) 406
CseI GACGC 2 cut(s) 290, 499
Csp6I GTAC 1 cut(s) 622
CviAII CATG 3 cut(s) 135, 315, 607
CviJI RGCY 8 cut(s) 75, 249, 264, 291, 505, 574, 587, 598
CviKI_1 RGCY 8 cut(s) 75, 249, 264, 291, 505, 574, 587, 598
CviQI GTAC 1 cut(s) 622
DdeI CTNAG 4 cut(s) 90, 506, 514, 681
DinI GGCGCC 1 cut(s) 604
DpnI GATC 2 cut(s) 392, 405
DpnII GATC 2 cut(s) 390, 403
Eco91I GGTNACC 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 66
EgeI GGCGCC 1 cut(s) 604
EheI GGCGCC 1 cut(s) 604
Esp3I CGTCTC 1 cut(s) 517
FaeI CATG 3 cut(s) 138, 318, 610
FaiI YATR 6 cut(s) 114, 136, 195, 287, 316, 608
FalI AAGNNNNNCTT 8 cut(s) 83, 115, 252, 284, 365, 397, 489, 521
FatI CATG 3 cut(s) 134, 314, 606
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 3 cut(s) 605, 649, 662
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 12, 345
GlaI GCGC 3 cut(s) 460, 566, 604
GluI GCNGC 1 cut(s) 33
HaeII RGCGCY 2 cut(s) 462, 606
HapII CCGG 1 cut(s) 633
HgaI GACGC 2 cut(s) 290, 499
HhaI GCGC 3 cut(s) 461, 567, 605
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 3 cut(s) 138, 318, 610
Hin6I GCGC 3 cut(s) 459, 565, 603
HinP1I GCGC 3 cut(s) 459, 565, 603
HinfI GANTC 2 cut(s) 485, 521
HpaII CCGG 1 cut(s) 633
HphI GGTGA 1 cut(s) 327
Hpy166II GTNNAC 2 cut(s) 227, 541
Hpy188I TCNGA 3 cut(s) 403, 469, 526
Hpy188III TCNNGA 3 cut(s) 208, 236, 272
Hpy8I GTNNAC 2 cut(s) 227, 541
HpyAV CCTTC 3 cut(s) 96, 254, 342
HpyCH4III ACNGT 4 cut(s) 188, 224, 538, 553
HpyCH4V TGCA 5 cut(s) 215, 362, 385, 413, 428
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 368, 382, 571
HpyF3I CTNAG 4 cut(s) 90, 506, 514, 681
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 3 cut(s) 138, 318, 610
HspAI GCGC 3 cut(s) 459, 565, 603
KasI GGCGCC 1 cut(s) 602
Kzo9I GATC 2 cut(s) 390, 403
LweI GCATC 1 cut(s) 265
MaeI CTAG 2 cut(s) 12, 345
MaeIII GTNAC 3 cut(s) 94, 415, 547
MalI GATC 2 cut(s) 392, 405
MboI GATC 2 cut(s) 390, 403
MboII GAAGA 3 cut(s) 260, 331, 360
MluCI AATT 4 cut(s) 163, 352, 438, 646
Mly113I GGCGCC 1 cut(s) 603
MlyI GAGTC 1 cut(s) 479
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 1 cut(s) 113
MroXI GAANNNNTTC 3 cut(s) 231, 264, 352
MseI TTAA 4 cut(s) 54, 102, 161, 660
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 2 cut(s) 68, 634
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 567
MwoI GCNNNNNNNGC 4 cut(s) 72, 368, 382, 571
NarI GGCGCC 1 cut(s) 603
NciI CCSGG 1 cut(s) 634
NdeII GATC 2 cut(s) 390, 403
NlaIII CATG 3 cut(s) 138, 318, 610
NlaIV GGNNCC 1 cut(s) 604
NmuCI GTSAC 1 cut(s) 547
PdmI GAANNNNTTC 3 cut(s) 231, 264, 352
PfeI GAWTC 1 cut(s) 521
PflFI GACNNNGTC 1 cut(s) 497
PflMI CCANNNNNTGG 1 cut(s) 67
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 479
PluTI GGCGCC 1 cut(s) 606
PpsI GAGTC 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 66
PspEI GGTNACC 1 cut(s) 94
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 604
PstNI CAGNNNCTG 2 cut(s) 419, 557
PsyI GACNNNGTC 1 cut(s) 497
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
SaqAI TTAA 4 cut(s) 54, 102, 161, 660
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 390, 403
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 2 cut(s) 68, 634
SfaNI GCATC 1 cut(s) 265
SfoI GGCGCC 1 cut(s) 604
Sse9I AATT 4 cut(s) 163, 352, 438, 646
SsiI CCGC 3 cut(s) 5, 32, 64
SspDI GGCGCC 1 cut(s) 602
SspMI CTAG 2 cut(s) 12, 345
StyD4I CCNGG 2 cut(s) 66, 632
TaaI ACNGT 4 cut(s) 188, 224, 538, 553
TaqI TCGA 3 cut(s) 207, 341, 406
TasI AATT 4 cut(s) 163, 352, 438, 646
TatI WGTACW 1 cut(s) 621
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 4 cut(s) 54, 102, 161, 660
Tru9I TTAA 4 cut(s) 54, 102, 161, 660
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 1 cut(s) 547
Tsp45I GTSAC 1 cut(s) 547
TspRI CASTG 1 cut(s) 229
Tth111I GACNNNGTC 1 cut(s) 497
Van91I CCANNNNNTGG 1 cut(s) 67
XapI RAATTY 3 cut(s) 163, 352, 646
XmiI GTMKAC 1 cut(s) 540
XmnI GAANNNNTTC 3 cut(s) 231, 264, 352
XspI CTAG 2 cut(s) 12, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.