Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025421.1

Orthogroup ID

OG0016378

Physical Location & Seq

Genomic Coordinates Forward (+)

1462 .. 3010

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025421.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggcggtttctagggatttttgtatctctgcggcattgggttcttgtccttttaagcaccaccgtctgggaagctctttccaaccttctaaggtagcctttaaggattgttatggtggagtatttagtaattcatgggagatgagtcagatgacacaaccatcctgcttaaattcgaaagagtacaagtctaagtgccactataaccaatcattcgggattgcagaagacagtgaacttattcccgaacctgtaagccaagaaacagaagactttctccttgacgctatcaatatgagcttcttcgagcgtttaaacttggcatggaagataatgttcccttcaccatctactaggagaaattccaatgcaaagattgccaagcaacgcttgcagatgatcctgttctctgatcgatgtgctgtaactgatggtgcaaagcagaagattgtgagcaacattgtgggcgctctctctgactttgtagagatagattcacaggacaaagtccagcttagcgtctcagccgattcagaaatgggtacagtgtactctgttacagttcctgttcggcgcgtgaagcctgaacatcaagctgtggatgagcttggtgccatgaaaaatgttgagtacaaggatacagggacatcatcagattctgttgatgttaagtttgatttctacatccctaacaagtctccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016043 GO:0019899 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051117 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MinE

Protein Analysis

234

Amino Acids

26.11

Weight (kDa)

5.84

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016378)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47773
malus_domestica	MD09G1057200.v1.1
prunus_persica	Prupe.3G261900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166971
rosa_laevigata	RLG00000021685
rosa_multiflora	Rmu_sc0002735.1_g000025 Rmu_sc0010966.1_g000001 Rmu_sc0025421.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083900
rosa_rugosa	Rorug02G0527000
rosa_samantha	Rh2AG593900 Rh2BG605400 Rh2CG576300 Rh2DG616900
rosa_wichuraiana	Rw2G049450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	611
AccB7I	CCANNNNNTGG	1 cut(s)	67
AccII	CGCG	1 cut(s)	576
AciI	CCGC	2 cut(s)	5, 32
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	2 cut(s)	172, 361
AfaI	GTAC	4 cut(s)	185, 544, 551, 632
AfiI	CCNNNNNNNGG	1 cut(s)	67
AluBI	AGCT	5 cut(s)	75, 300, 514, 596, 607
AluI	AGCT	5 cut(s)	75, 300, 514, 596, 607
Alw26I	GTCTC	1 cut(s)	526
AlwI	GGATC	1 cut(s)	394
AlwNI	CAGNNNCTG	2 cut(s)	566, 659
ApoI	RAATTY	2 cut(s)	172, 361
Asp700I	GAANNNNTTC	2 cut(s)	240, 273
AspLEI	GCGC	2 cut(s)	470, 576
AsuHPI	GGTGA	1 cut(s)	336
AsuII	TTCGAA	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	611
BbsI	GAAGAC	2 cut(s)	234, 276
BccI	CCATC	3 cut(s)	169, 355, 425
BciVI	GTATCC	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	526
BfaI	CTAG	2 cut(s)	12, 354
BfoI	RGCGCY	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	1 cut(s)	33
BlpI	GCTNAGC	1 cut(s)	515
BlsI	GCNGC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	613
BpiI	GAAGAC	2 cut(s)	234, 276
Bpu1102I	GCTNAGC	1 cut(s)	515
Bpu14I	TTCGAA	1 cut(s)	176
Bsa29I	ATCGAT	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseCI	ATCGAT	1 cut(s)	415
BseGI	GGATG	3 cut(s)	161, 607, 684
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	537
Bsh1236I	CGCG	1 cut(s)	576
BshNI	GGYRCC	1 cut(s)	611
BshVI	ATCGAT	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	526
BsmBI	CGTCTC	1 cut(s)	526
BsmFI	GGGAC	1 cut(s)	658
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	399, 412
Bsp1720I	GCTNAGC	1 cut(s)	515
BspACI	CCGC	2 cut(s)	5, 32
BspCNI	CTCAG	1 cut(s)	536
BspDI	ATCGAT	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	576
BspLI	GGNNCC	1 cut(s)	613
BspPI	GGATC	1 cut(s)	394
BspT104I	TTCGAA	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	611
BssMI	GATC	2 cut(s)	399, 412
Bst4CI	ACNGT	4 cut(s)	65, 233, 547, 562
BstAPI	GCANNNNNTGC	2 cut(s)	377, 391
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	4 cut(s)	90, 192, 515, 523
BstF5I	GGATG	3 cut(s)	161, 607, 684
BstFNI	CGCG	1 cut(s)	576
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	2 cut(s)	470, 576
BstKTI	GATC	2 cut(s)	402, 415
BstMAI	GTCTC	1 cut(s)	526
BstMBI	GATC	2 cut(s)	399, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 391, 580
BstUI	CGCG	1 cut(s)	576
BstV2I	GAAGAC	2 cut(s)	234, 276
Bsu15I	ATCGAT	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	631
BsuTUI	ATCGAT	1 cut(s)	415
BtsCI	GGATG	3 cut(s)	161, 607, 684
BtsIMutI	CAGTG	2 cut(s)	238, 552
Cac8I	GCNNGC	1 cut(s)	392
CaiI	CAGNNNCTG	2 cut(s)	566, 659
CfoI	GCGC	2 cut(s)	470, 576
ClaI	ATCGAT	1 cut(s)	415
CseI	GACGC	2 cut(s)	293, 508
Csp6I	GTAC	4 cut(s)	184, 543, 550, 631
CviAII	CATG	3 cut(s)	135, 324, 616
CviJI	RGCY	9 cut(s)	75, 98, 258, 300, 514, 527, 583, 596, 607
CviKI_1	RGCY	9 cut(s)	75, 98, 258, 300, 514, 527, 583, 596, 607
CviQI	GTAC	4 cut(s)	184, 543, 550, 631
DdeI	CTNAG	4 cut(s)	90, 192, 515, 523
DpnI	GATC	2 cut(s)	401, 414
DpnII	GATC	2 cut(s)	399, 412
DraI	TTTAAA	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	526
FaeI	CATG	3 cut(s)	138, 327, 619
FaiI	YATR	6 cut(s)	114, 136, 204, 296, 325, 617
FalI	AAGNNNNNCTT	6 cut(s)	83, 115, 374, 406, 498, 530
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	3 cut(s)	134, 323, 615
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	3 cut(s)	148, 614, 671
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	2 cut(s)	12, 354
GlaI	GCGC	2 cut(s)	469, 575
GluI	GCNGC	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	471
HgaI	GACGC	2 cut(s)	293, 508
HhaI	GCGC	2 cut(s)	470, 576
Hin1II	CATG	3 cut(s)	138, 327, 619
Hin6I	GCGC	2 cut(s)	468, 574
HinP1I	GCGC	2 cut(s)	468, 574
HinfI	GANTC	4 cut(s)	145, 494, 530, 656
HphI	GGTGA	1 cut(s)	336
Hpy166II	GTNNAC	2 cut(s)	236, 550
Hpy188I	TCNGA	5 cut(s)	150, 412, 478, 535, 655
Hpy188III	TCNNGA	2 cut(s)	217, 245
Hpy8I	GTNNAC	2 cut(s)	236, 550
HpyAV	CCTTC	2 cut(s)	96, 351
HpyCH4III	ACNGT	4 cut(s)	65, 233, 547, 562
HpyCH4V	TGCA	4 cut(s)	224, 371, 394, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 391, 580
HpyF3I	CTNAG	4 cut(s)	90, 192, 515, 523
Hsp92II	CATG	3 cut(s)	138, 327, 619
HspAI	GCGC	2 cut(s)	468, 574
Kzo9I	GATC	2 cut(s)	399, 412
LpnPI	CCDG	9 cut(s)	53, 178, 264, 416, 485, 524, 579, 597, 627
MaeI	CTAG	2 cut(s)	12, 354
MaeIII	GTNAC	2 cut(s)	424, 556
MalI	GATC	2 cut(s)	401, 414
MboI	GATC	2 cut(s)	399, 412
MboII	GAAGA	5 cut(s)	239, 281, 295, 340, 457
MluCI	AATT	3 cut(s)	130, 172, 361
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	106
MroXI	GAANNNNTTC	2 cut(s)	240, 273
MseI	TTAA	5 cut(s)	54, 102, 170, 314, 669
MssI	GTTTAAAC	1 cut(s)	315
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	3 cut(s)	377, 391, 580
NdeII	GATC	2 cut(s)	399, 412
NlaIII	CATG	3 cut(s)	138, 327, 619
NlaIV	GGNNCC	1 cut(s)	613
NspV	TTCGAA	1 cut(s)	176
PdmI	GAANNNNTTC	2 cut(s)	240, 273
PfeI	GAWTC	3 cut(s)	494, 530, 656
PflFI	GACNNNGTC	1 cut(s)	506
PflMI	CCANNNNNTGG	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	153
PmeI	GTTTAAAC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	613
PstNI	CAGNNNCTG	2 cut(s)	566, 659
PsyI	GACNNNGTC	1 cut(s)	506
RsaI	GTAC	4 cut(s)	185, 544, 551, 632
RsaNI	GTAC	4 cut(s)	184, 543, 550, 631
SaqAI	TTAA	5 cut(s)	54, 102, 170, 314, 669
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	399, 412
SchI	GAGTC	1 cut(s)	154
SetI	ASST	8 cut(s)	77, 88, 96, 253, 302, 516, 598, 609
SfuI	TTCGAA	1 cut(s)	176
Sse9I	AATT	3 cut(s)	130, 172, 361
SsiI	CCGC	2 cut(s)	5, 32
SspMI	CTAG	2 cut(s)	12, 354
TaaI	ACNGT	4 cut(s)	65, 233, 547, 562
TaqI	TCGA	3 cut(s)	176, 306, 415
TasI	AATT	3 cut(s)	130, 172, 361
TatI	WGTACW	3 cut(s)	183, 549, 630
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	3 cut(s)	494, 530, 656
Tru1I	TTAA	5 cut(s)	54, 102, 170, 314, 669
Tru9I	TTAA	5 cut(s)	54, 102, 170, 314, 669
TscAI	CASTG	2 cut(s)	238, 552
TspDTI	ATGAA	2 cut(s)	123, 632
TspGWI	ACGGA	1 cut(s)	690
TspRI	CASTG	2 cut(s)	238, 552
Tth111I	GACNNNGTC	1 cut(s)	506
Van91I	CCANNNNNTGG	1 cut(s)	67
XapI	RAATTY	2 cut(s)	172, 361
XmnI	GAANNNNTTC	2 cut(s)	240, 273
XspI	CTAG	2 cut(s)	12, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.