Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016378

Physical Location & Seq

Genomic Coordinates Reverse (-)

6453233 .. 6457666

Gene Structure 4434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGTCAGATGACACAACCATCCTGCTTAAATTCTAAAGGGTACAAGTCTAAGTGCCACTATAACCAATCATTTGGGATTGCAGAAGACAGTGAACTTATTCCCGAACCTGTAAGCCAAGAAACAGAAGGCTTTCTCCTTGACGCTATCAATATGAGCTTCTTCGAGCGTTTAAACTTGGCATGGAAGATAATGTTCCCTTCACCATCTACTAGAAGAAATTCCAATGCAAAGATTGCCAAGCAACGCTTGCAGATGATCCTGTTCTCTGATCGATGTGCTGTAACTGATGGTGCAAAGCAGAAGATTGTGAGCAACATTGTGGGCGCTCTCTCTGACTTTGTAGAGATAGATTCACAGGACAAAGTCCAGCTTAGCGTCTCAGCAGATTCAGAAGCAGGTACAGTGTACTCTGTTACAGTTCCTGTTCGGCGCGTGAAGCCTGAACATCAAGCTGTGGATGAGCTTGGTGCCATGAAAAATGTTGAGTACAAGGATACAGGGATATCATCAGATTCTGTTGATGTTAAGTTTGATTTCTACATCCCTAACAAGTCTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016043 GO:0019899 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051117 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MinE

Protein Analysis

187

Amino Acids

20.8

Weight (kDa)

5.46

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MinE	PF03776	77 - 144	1.6e-13	Septum formation topological specificity factor MinE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016378)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47773
malus_domestica	MD09G1057200.v1.1
prunus_persica	Prupe.3G261900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166971
rosa_laevigata	RLG00000021685
rosa_multiflora	Rmu_sc0002735.1_g000025 Rmu_sc0010966.1_g000001 Rmu_sc0025421.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083900
rosa_rugosa	Rorug02G0527000
rosa_samantha	Rh2AG593900 Rh2BG605400 Rh2CG576300 Rh2DG616900
rosa_wichuraiana	Rw2G049450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	470
AccII	CGCG	1 cut(s)	435
AclWI	GGATC	1 cut(s)	253
AcsI	RAATTY	2 cut(s)	31, 220
AfaI	GTAC	4 cut(s)	44, 403, 410, 491
AluBI	AGCT	4 cut(s)	159, 373, 455, 466
AluI	AGCT	4 cut(s)	159, 373, 455, 466
Alw26I	GTCTC	1 cut(s)	385
AlwI	GGATC	1 cut(s)	253
AlwNI	CAGNNNCTG	2 cut(s)	425, 518
ApoI	RAATTY	2 cut(s)	31, 220
Asp700I	GAANNNNTTC	3 cut(s)	99, 132, 220
AspLEI	GCGC	2 cut(s)	329, 435
AsuHPI	GGTGA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	93
BccI	CCATC	3 cut(s)	28, 214, 284
BciVI	GTATCC	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	490
BlpI	GCTNAGC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	374
Bsa29I	ATCGAT	1 cut(s)	274
BseCI	ATCGAT	1 cut(s)	274
BseGI	GGATG	3 cut(s)	20, 466, 543
BseMII	CTCAG	1 cut(s)	396
Bsh1236I	CGCG	1 cut(s)	435
BshNI	GGYRCC	1 cut(s)	470
BshVI	ATCGAT	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	385
BsmBI	CGTCTC	1 cut(s)	385
Bsp143I	GATC	2 cut(s)	258, 271
Bsp1720I	GCTNAGC	1 cut(s)	374
BspCNI	CTCAG	1 cut(s)	395
BspDI	ATCGAT	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	472
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	470
BssMI	GATC	2 cut(s)	258, 271
Bst4CI	ACNGT	3 cut(s)	92, 406, 421
BstAPI	GCANNNNNTGC	2 cut(s)	236, 250
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	51, 374, 382
BstF5I	GGATG	3 cut(s)	20, 466, 543
BstFNI	CGCG	1 cut(s)	435
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	2 cut(s)	329, 435
BstKTI	GATC	2 cut(s)	261, 274
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	2 cut(s)	258, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 250, 439
BstUI	CGCG	1 cut(s)	435
BstV2I	GAAGAC	1 cut(s)	93
BstXI	CCANNNNNNTGG	1 cut(s)	74
Bsu15I	ATCGAT	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	490
BsuTUI	ATCGAT	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	20, 466, 543
BtsIMutI	CAGTG	2 cut(s)	97, 411
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	251
CaiI	CAGNNNCTG	2 cut(s)	425, 518
CfoI	GCGC	2 cut(s)	329, 435
ClaI	ATCGAT	1 cut(s)	274
CseI	GACGC	2 cut(s)	152, 367
Csp6I	GTAC	4 cut(s)	43, 402, 409, 490
CviAII	CATG	2 cut(s)	183, 475
CviJI	RGCY	7 cut(s)	117, 132, 159, 373, 442, 455, 466
CviKI_1	RGCY	7 cut(s)	117, 132, 159, 373, 442, 455, 466
CviQI	GTAC	4 cut(s)	43, 402, 409, 490
DdeI	CTNAG	3 cut(s)	51, 374, 382
DpnI	GATC	2 cut(s)	260, 273
DpnII	GATC	2 cut(s)	258, 271
DraI	TTTAAA	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	507
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	2 cut(s)	186, 478
FaiI	YATR	4 cut(s)	63, 155, 184, 476
FalI	AAGNNNNNCTT	4 cut(s)	233, 265, 357, 389
FatI	CATG	2 cut(s)	182, 474
FokI	GGATG	3 cut(s)	7, 473, 530
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	2 cut(s)	328, 434
HaeII	RGCGCY	1 cut(s)	330
HgaI	GACGC	2 cut(s)	152, 367
HhaI	GCGC	2 cut(s)	329, 435
Hin1II	CATG	2 cut(s)	186, 478
Hin6I	GCGC	2 cut(s)	327, 433
HinP1I	GCGC	2 cut(s)	327, 433
HinfI	GANTC	4 cut(s)	4, 353, 389, 515
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	2 cut(s)	95, 409
Hpy188I	TCNGA	5 cut(s)	9, 271, 337, 394, 514
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	2 cut(s)	95, 409
HpyAV	CCTTC	2 cut(s)	122, 210
HpyCH4III	ACNGT	3 cut(s)	92, 406, 421
HpyCH4V	TGCA	4 cut(s)	83, 230, 253, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 250, 439
HpyF3I	CTNAG	3 cut(s)	51, 374, 382
Hsp92II	CATG	2 cut(s)	186, 478
HspAI	GCGC	2 cut(s)	327, 433
Kzo9I	GATC	2 cut(s)	258, 271
LpnPI	CCDG	9 cut(s)	37, 123, 275, 344, 383, 384, 438, 456, 486
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	283, 415
MalI	GATC	2 cut(s)	260, 273
MboI	GATC	2 cut(s)	258, 271
MboII	GAAGA	5 cut(s)	98, 154, 199, 228, 316
MluCI	AATT	2 cut(s)	31, 220
MlyI	GAGTC	1 cut(s)	13
MroXI	GAANNNNTTC	3 cut(s)	99, 132, 220
MseI	TTAA	3 cut(s)	29, 173, 528
MssI	GTTTAAAC	1 cut(s)	174
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	236, 250, 439
NdeII	GATC	2 cut(s)	258, 271
NlaIII	CATG	2 cut(s)	186, 478
NlaIV	GGNNCC	1 cut(s)	472
PdmI	GAANNNNTTC	3 cut(s)	99, 132, 220
PfeI	GAWTC	3 cut(s)	353, 389, 515
PflFI	GACNNNGTC	1 cut(s)	365
PleI	GAGTC	1 cut(s)	12
PmeI	GTTTAAAC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	472
PstNI	CAGNNNCTG	2 cut(s)	425, 518
PsyI	GACNNNGTC	1 cut(s)	365
RsaI	GTAC	4 cut(s)	44, 403, 410, 491
RsaNI	GTAC	4 cut(s)	43, 402, 409, 490
SaqAI	TTAA	3 cut(s)	29, 173, 528
Sau3AI	GATC	2 cut(s)	258, 271
SchI	GAGTC	1 cut(s)	13
SetI	ASST	6 cut(s)	112, 161, 375, 403, 457, 468
Sse9I	AATT	2 cut(s)	31, 220
SspMI	CTAG	1 cut(s)	213
TaaI	ACNGT	3 cut(s)	92, 406, 421
TaqI	TCGA	2 cut(s)	165, 274
TasI	AATT	2 cut(s)	31, 220
TatI	WGTACW	2 cut(s)	408, 489
TfiI	GAWTC	3 cut(s)	353, 389, 515
Tru1I	TTAA	3 cut(s)	29, 173, 528
Tru9I	TTAA	3 cut(s)	29, 173, 528
TscAI	CASTG	2 cut(s)	97, 411
TspDTI	ATGAA	1 cut(s)	491
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	2 cut(s)	97, 411
Tth111I	GACNNNGTC	1 cut(s)	365
XapI	RAATTY	2 cut(s)	31, 220
XmnI	GAANNNNTTC	3 cut(s)	99, 132, 220
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.