Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016378

Physical Location & Seq

Genomic Coordinates Forward (+)

24755380 .. 24756974

Gene Structure 1595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G261900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGATTTCTGGTGAATTGGGGATCTCTGCAATATTGGGTTCTTGCCCTTTTAAGCACCACTCTCTGGGAAGCTCTCTCAAGCCCTCCAAGGTAACATTGAAGGGTTTTAATGGAGGAGGTAGTTCACGGGTGATGATTCAAACGTCCTTAAATCTGGAAGGCTACAAGTCTAAGTGCCAGTGTAGACAAACGTTTGGGATTGCAGAAAACAGTGAACCTTTTCCCGGACCTCTAAGCCAAGAAACAGAGGGCTTTCTCCTCCGTTCTATAAACATGAGCTTTTTTGAGCGTTTAAACTTGGCATGGAAGATAGTGTTCCCTTCACCATCGACAAGAAGGAATTCTAATGCAAAGATAGCCAAGCAGCGGTTGCAGATGATCCTCTTCTCAGATCGATGCGCAGTAACTGATGACGCGAAGGAGAAGATTGTGAGCAACATTGTTGGTGCTCTATCCGATTTCGTGGAAATAGAGTCACAGGATAATGTCCAGCTTAGTGTCTCAACAGATGAAGACCTAGGCACAGTGTATTCTGTTACAATCCCTGTTCGGCGTGTGAAGCCTGAATATCATCAAGATGAGGATGATGTTGGGGTCATAACCAATGATGAGTACAAGGATATTGGGGAACACATTGGATCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016043 GO:0019899 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051117 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MinE

Protein Analysis

217

Amino Acids

23.8

Weight (kDa)

5.62

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016378)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47773
malus_domestica	MD09G1057200.v1.1
prunus_persica	Prupe.3G261900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166971
rosa_laevigata	RLG00000021685
rosa_multiflora	Rmu_sc0002735.1_g000025 Rmu_sc0010966.1_g000001 Rmu_sc0025421.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083900
rosa_rugosa	Rorug02G0527000
rosa_samantha	Rh2AG593900 Rh2BG605400 Rh2CG576300 Rh2DG616900
rosa_wichuraiana	Rw2G049450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	403
AccB7I	CCANNNNNTGG	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	187
AccII	CGCG	1 cut(s)	419
AciI	CCGC	1 cut(s)	370
AclI	AACGTT	1 cut(s)	194
AclWI	GGATC	3 cut(s)	32, 376, 649
AcsI	RAATTY	1 cut(s)	343
AfaI	GTAC	1 cut(s)	617
AfiI	CCNNNNNNNGG	3 cut(s)	67, 227, 369
AgsI	TTSAA	2 cut(s)	103, 143
AluBI	AGCT	3 cut(s)	75, 282, 496
AluI	AGCT	3 cut(s)	75, 282, 496
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	3 cut(s)	32, 376, 649
AlwNI	CAGNNNCTG	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	343
Asp700I	GAANNNNTTC	2 cut(s)	222, 343
AspA2I	CCTAGG	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	3 cut(s)	26, 145, 318
AvaII	GGWCC	1 cut(s)	230
AvrII	CCTAGG	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	1 cut(s)	521
BisI	GCNGC	1 cut(s)	368
BlnI	CCTAGG	1 cut(s)	520
BlsI	GCNGC	1 cut(s)	369
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	228
Bsa29I	ATCGAT	1 cut(s)	397
BsaJI	CCNNGG	2 cut(s)	90, 520
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 227, 369
Bse1I	ACTGG	1 cut(s)	181
BseCI	ATCGAT	1 cut(s)	397
BseDI	CCNNGG	2 cut(s)	90, 520
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	3 cut(s)	67, 227, 369
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	2 cut(s)	132, 251
BseXI	GCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	419
BshVI	ATCGAT	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	67, 227, 369
BsmAI	GTCTC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	4 cut(s)	24, 381, 394, 641
BspACI	CCGC	1 cut(s)	370
BspCNI	CTCAG	1 cut(s)	404
BspDI	ATCGAT	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	419
BspPI	GGATC	3 cut(s)	32, 376, 649
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	90, 520
BssMI	GATC	4 cut(s)	24, 381, 394, 641
BssT1I	CCWWGG	2 cut(s)	90, 520
Bst4CI	ACNGT	2 cut(s)	215, 529
Bst6I	CTCTTC	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstDEI	CTNAG	4 cut(s)	174, 236, 391, 497
BstF5I	GGATG	1 cut(s)	592
BstFNI	CGCG	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	4 cut(s)	27, 384, 397, 644
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	4 cut(s)	24, 381, 394, 641
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 373, 562
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	2 cut(s)	24, 641
BstYI	RGATCY	2 cut(s)	24, 641
Bsu15I	ATCGAT	1 cut(s)	397
BsuTUI	ATCGAT	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	592
BtsIMutI	CAGTG	3 cut(s)	188, 220, 534
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	397
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	616
CviAII	CATG	2 cut(s)	277, 306
CviJI	RGCY	9 cut(s)	75, 85, 165, 240, 255, 282, 362, 496, 565
CviKI_1	RGCY	9 cut(s)	75, 85, 165, 240, 255, 282, 362, 496, 565
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	4 cut(s)	174, 236, 391, 497
DpnI	GATC	4 cut(s)	26, 383, 396, 643
DpnII	GATC	4 cut(s)	24, 381, 394, 641
DraI	TTTAAA	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	90, 520
Eco47I	GGWCC	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	90, 520
ErhI	CCWWGG	2 cut(s)	90, 520
FaeI	CATG	2 cut(s)	280, 309
FaiI	YATR	4 cut(s)	272, 278, 307, 602
FatI	CATG	2 cut(s)	276, 305
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	368
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	1 cut(s)	368
FspBI	CTAG	1 cut(s)	521
FspI	TGCGCA	1 cut(s)	403
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	368
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	280, 309
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	2 cut(s)	139, 476
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	3 cut(s)	26, 145, 318
Hpy166II	GTNNAC	3 cut(s)	128, 188, 218
Hpy188I	TCNGA	2 cut(s)	394, 460
Hpy188III	TCNNGA	2 cut(s)	158, 578
Hpy8I	GTNNAC	3 cut(s)	128, 188, 218
HpyAV	CCTTC	5 cut(s)	97, 155, 333, 333, 415
HpyCH4III	ACNGT	2 cut(s)	215, 529
HpyCH4IV	ACGT	2 cut(s)	146, 194
HpyCH4V	TGCA	4 cut(s)	32, 206, 353, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 373, 562
HpyF3I	CTNAG	4 cut(s)	174, 236, 391, 497
HpySE526I	ACGT	2 cut(s)	146, 194
Hsp92II	CATG	2 cut(s)	280, 309
HspAI	GCGC	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	24, 381, 394, 641
LpnPI	CCDG	8 cut(s)	53, 143, 194, 241, 467, 506, 561, 579
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	389
MaeI	CTAG	1 cut(s)	521
MaeII	ACGT	2 cut(s)	146, 194
MaeIII	GTNAC	4 cut(s)	94, 406, 477, 538
MalI	GATC	4 cut(s)	26, 383, 396, 643
MboI	GATC	4 cut(s)	24, 381, 394, 641
MboII	GAAGA	4 cut(s)	322, 379, 439, 527
MflI	RGATCY	2 cut(s)	24, 641
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	2 cut(s)	17, 343
MlyI	GAGTC	1 cut(s)	485
MnlI	CCTC	8 cut(s)	97, 110, 113, 243, 244, 272, 395, 577
MroXI	GAANNNNTTC	2 cut(s)	222, 343
MseI	TTAA	4 cut(s)	54, 111, 152, 296
MslI	CAYNNNNRTG	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	370
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	228
MssI	GTTTAAAC	1 cut(s)	297
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	3 cut(s)	359, 373, 562
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	4 cut(s)	24, 381, 394, 641
NlaIII	CATG	2 cut(s)	280, 309
NmuCI	GTSAC	1 cut(s)	477
NsbI	TGCGCA	1 cut(s)	403
PdmI	GAANNNNTTC	2 cut(s)	222, 343
PfeI	GAWTC	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	67
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	369
PleI	GAGTC	1 cut(s)	484
PmeI	GTTTAAAC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	484
Psp1406I	AACGTT	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	2 cut(s)	24, 641
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	4 cut(s)	54, 111, 152, 296
SatI	GCNGC	1 cut(s)	368
Sau3AI	GATC	4 cut(s)	24, 381, 394, 641
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	454
SfaNI	GCATC	1 cut(s)	389
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	17, 343
SsiI	CCGC	1 cut(s)	370
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	2 cut(s)	90, 520
TaaI	ACNGT	2 cut(s)	215, 529
TaiI	ACGT	2 cut(s)	149, 197
TaqI	TCGA	2 cut(s)	332, 397
TasI	AATT	2 cut(s)	17, 343
TatI	WGTACW	1 cut(s)	615
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	4 cut(s)	54, 111, 152, 296
Tru9I	TTAA	4 cut(s)	54, 111, 152, 296
TscAI	CASTG	3 cut(s)	188, 220, 534
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	1 cut(s)	528
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	3 cut(s)	188, 220, 534
Van91I	CCANNNNNTGG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	343
XmaJI	CCTAGG	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	187
XmnI	GAANNNNTTC	2 cut(s)	222, 343
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.