Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0018869

Physical Location & Seq

Genomic Coordinates Forward (+)

36635803 .. 36637061

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCCTCCATGGTCGCGACCTGCTCATCAGTACTTCTACCAACGCCTCGTCCTCGTCTTATTCCCAAAAGTTTAGTTTCCCCTAACCCTAAATTTCCCAAGACCTTCCTTCATCTTAACCAAACACCGGCTTTCCTAAGGTGCTTGAAGGTTCGAGAATCTAGGGTTTTGGTACCCGTTATGAGAGTAAGTGTTGGCCCCTACAATAACAATTGTGGAAGATGTGACCTTTGGAAGAGACCAGTGGTGCAAAATCAATCTGACCTAGTTCAGGCGCCGGCGGAAGTGCCCAGAAATAAGAACTCCCTGATGAAATTTGCTGATTCTATTTGGTCATTCGTTTTCGGAGACGGTAATCCAAACAAAGGATCTCATGAAGAGAACAGATGGAAATTGATTGAGCAATACATAACCTCAAAGGGTGGTGTTGTAGCAGCAGAAGAGCTTGCTCCATATCTTGATGGTTTCGAAACTTCAGGGAAAATCCCAATCAATGAGGAAAAGTTCATGTTACCTGTTCTTAAAAGATATGAGGGTCATCCTGAAATTGATGAATACGGCAACGTTCTCTACTGGTTTATGTCCCTACAGCCCGAAGATAAGGAATTGCGTGACATCGAGCATAAAACCTTCATGGAGAAGAAATGGCAGTTCAGTAAGATCAGCTTATTTGAGAGCGCAAAGGTTGTCTTATTTGGTTTAGTTCTCCGGGACGTCCTTTCGTATCTTACCAAGGAGTTGTTACTTATGAAAAGCGGTAGTACTAAGTTATGGGCTGCCGTAGGACTCCAGCTTTCTGTTATTTGTTTCTTTCTATTGATTCCTTTGTTCAGGTTTATGTTATTTGGCCTCGTTTTTCTTTATAAGAATGCTGGCATTGAAAAACGAAACCGAGCAAGACAACAAGCTGCTGAAGCACTTGAATCTCCTAATCTCCTGCTTAGACAAAAGATCCCCGGTGCTCGAAAAATGGCTGGAATTCTCAAGGACGGTGAAGAAGCAAGAGATGATAATAAAGAACCTCCACAAAGTTTCGCTCCTCATAACCTCGCTGTAAGCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

40.23

Weight (kDa)

9.34

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48680
rosa_laevigata	RLG00000021789
rosa_multiflora	Rmu_sc0002416.1_g000012
rosa_roxburghii	Rroxscaffold_2G00082860
rosa_rugosa	Rorug02G0534200
rosa_samantha	Rh2AG604600 Rh2BG617600 Rh2CG585800 Rh2DG628200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	864
AatII	GACGTC	1 cut(s)	717
Acc36I	ACCTGC	1 cut(s)	29
Acc65I	GGTACC	1 cut(s)	172
AccB1I	GGYRCC	2 cut(s)	172, 274
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	281, 756
AclI	AACGTT	1 cut(s)	564
AclWI	GGATC	2 cut(s)	376, 946
AcsI	RAATTY	3 cut(s)	92, 314, 978
AcuI	CTGAAG	2 cut(s)	459, 933
AcyI	GRCGYC	2 cut(s)	275, 714
AfaI	GTAC	3 cut(s)	33, 174, 763
AfiI	CCNNNNNNNGG	3 cut(s)	127, 271, 365
AgsI	TTSAA	3 cut(s)	148, 881, 923
AluBI	AGCT	4 cut(s)	445, 666, 793, 908
AluI	AGCT	4 cut(s)	445, 666, 793, 908
Alw21I	GWGCWC	1 cut(s)	964
Alw26I	GTCTC	2 cut(s)	232, 342
AlwI	GGATC	2 cut(s)	376, 946
AoxI	GGCC	3 cut(s)	3, 196, 847
ApeKI	GCWGC	3 cut(s)	434, 776, 908
ApoI	RAATTY	3 cut(s)	92, 314, 978
Asp718I	GGTACC	1 cut(s)	172
AspLEI	GCGC	2 cut(s)	277, 680
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	2 cut(s)	710, 957
AsuHPI	GGTGA	1 cut(s)	1004
AsuII	TTCGAA	1 cut(s)	468
AxyI	CCTNAGG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	291
BanI	GGYRCC	2 cut(s)	172, 274
Bbv12I	GWGCWC	1 cut(s)	964
BbvI	GCAGC	3 cut(s)	446, 763, 895
BccI	CCATC	2 cut(s)	381, 455
BceAI	ACGGC	2 cut(s)	574, 764
BcnI	CCSGG	2 cut(s)	710, 957
BcoDI	GTCTC	2 cut(s)	232, 342
BfaI	CTAG	2 cut(s)	162, 266
BfmI	CTRYAG	1 cut(s)	587
BfoI	RGCGCY	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	3 cut(s)	435, 777, 909
BlsI	GCNGC	3 cut(s)	436, 778, 910
BmcAI	AGTACT	2 cut(s)	33, 763
Bme1390I	CCNGG	2 cut(s)	710, 957
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	3 cut(s)	174, 199, 276
BmrFI	CCNGG	2 cut(s)	710, 957
BpmI	CTGGAG	1 cut(s)	773
Bpu14I	TTCGAA	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	968
BpuMI	CCSGG	2 cut(s)	710, 957
BsaHI	GRCGYC	2 cut(s)	275, 714
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	3 cut(s)	9, 732, 955
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 271, 365
Bse118I	RCCGGY	2 cut(s)	127, 277
Bse1I	ACTGG	2 cut(s)	242, 578
Bse21I	CCTNAGG	1 cut(s)	137
BseDI	CCNNGG	3 cut(s)	9, 732, 955
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	3 cut(s)	127, 271, 365
BseNI	ACTGG	2 cut(s)	242, 578
BseRI	GAGGAG	1 cut(s)	1029
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	3 cut(s)	446, 763, 895
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	3 cut(s)	5, 198, 849
BshNI	GGYRCC	2 cut(s)	172, 274
BsiHKAI	GWGCWC	1 cut(s)	964
BsiSI	CCGG	4 cut(s)	128, 278, 709, 957
BslFI	GGGAC	2 cut(s)	568, 725
BslI	CCNNNNNNNGG	3 cut(s)	127, 271, 365
BsmAI	GTCTC	2 cut(s)	232, 342
BsmBI	CGTCTC	1 cut(s)	342
BsmFI	GGGAC	2 cut(s)	568, 725
BsmI	GAATGC	1 cut(s)	874
BsnI	GGCC	3 cut(s)	5, 198, 849
Bso31I	GGTCTC	1 cut(s)	232
Bsp119I	TTCGAA	1 cut(s)	468
Bsp1286I	GDGCHC	2 cut(s)	291, 964
Bsp143I	GATC	3 cut(s)	368, 660, 951
Bsp19I	CCATGG	1 cut(s)	9
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	2 cut(s)	281, 756
BspANI	GGCC	3 cut(s)	5, 198, 849
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	3 cut(s)	174, 199, 276
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	2 cut(s)	376, 946
BspQI	GCTCTTC	1 cut(s)	435
BspT104I	TTCGAA	1 cut(s)	468
BspT107I	GGYRCC	2 cut(s)	172, 274
BspTNI	GGTCTC	1 cut(s)	232
BsrFI	RCCGGY	2 cut(s)	127, 277
BsrI	ACTGG	2 cut(s)	242, 578
BssAI	RCCGGY	2 cut(s)	127, 277
BssECI	CCNNGG	3 cut(s)	9, 732, 955
BssMI	GATC	3 cut(s)	368, 660, 951
BssNI	GRCGYC	2 cut(s)	275, 714
BssT1I	CCWWGG	2 cut(s)	9, 732
Bst4CI	ACNGT	2 cut(s)	353, 992
Bst6I	CTCTTC	3 cut(s)	230, 372, 435
BstACI	GRCGYC	2 cut(s)	275, 714
BstBI	TTCGAA	1 cut(s)	468
BstC8I	GCNNGC	3 cut(s)	279, 447, 874
BstDEI	CTNAG	3 cut(s)	137, 765, 941
BstDSI	CCRYGG	1 cut(s)	9
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	538
BstFNI	CGCG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	277, 680
BstKTI	GATC	3 cut(s)	371, 663, 954
BstMAI	GTCTC	2 cut(s)	232, 342
BstMBI	GATC	3 cut(s)	368, 660, 951
BstMWI	GCNNNNNNNGC	1 cut(s)	914
BstSCI	CCNGG	2 cut(s)	708, 955
BstSFI	CTRYAG	1 cut(s)	587
BstSLI	GKGCMC	1 cut(s)	291
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	3 cut(s)	446, 763, 895
BstX2I	RGATCY	2 cut(s)	368, 951
BstYI	RGATCY	2 cut(s)	368, 951
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	5, 198, 849
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	538
BtsIMutI	CAGTG	1 cut(s)	249
BtuMI	TCGCGA	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	3 cut(s)	279, 447, 874
CciI	TCATGA	1 cut(s)	373
CfoI	GCGC	2 cut(s)	277, 680
Cfr10I	RCCGGY	2 cut(s)	127, 277
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	32, 173, 762
CviAII	CATG	4 cut(s)	10, 374, 508, 634
CviQI	GTAC	3 cut(s)	32, 173, 762
DdeI	CTNAG	3 cut(s)	137, 765, 941
DinI	GGCGCC	1 cut(s)	276
DpnI	GATC	3 cut(s)	370, 662, 953
DpnII	GATC	3 cut(s)	368, 660, 951
Eam1104I	CTCTTC	3 cut(s)	230, 372, 435
EarI	CTCTTC	3 cut(s)	230, 372, 435
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	9, 732
Eco31I	GGTCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	459, 933
Eco81I	CCTNAGG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	978
EcoT14I	CCWWGG	2 cut(s)	9, 732
EgeI	GGCGCC	1 cut(s)	276
EheI	GGCGCC	1 cut(s)	276
ErhI	CCWWGG	2 cut(s)	9, 732
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	4 cut(s)	13, 377, 511, 637
FalI	AAGNNNNNCTT	4 cut(s)	650, 682, 674, 706
FaqI	GGGAC	2 cut(s)	568, 725
FatI	CATG	4 cut(s)	9, 373, 507, 633
Fnu4HI	GCNGC	3 cut(s)	435, 777, 909
FokI	GGATG	1 cut(s)	525
Fsp4HI	GCNGC	3 cut(s)	435, 777, 909
FspBI	CTAG	2 cut(s)	162, 266
GlaI	GCGC	2 cut(s)	276, 679
GluI	GCNGC	3 cut(s)	435, 777, 909
GsuI	CTGGAG	1 cut(s)	773
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	3 cut(s)	5, 198, 849
HapII	CCGG	4 cut(s)	128, 278, 709, 957
HhaI	GCGC	2 cut(s)	277, 680
Hin1I	GRCGYC	2 cut(s)	275, 714
Hin1II	CATG	4 cut(s)	13, 377, 511, 637
Hin6I	GCGC	2 cut(s)	275, 678
HinP1I	GCGC	2 cut(s)	275, 678
HinfI	GANTC	5 cut(s)	158, 323, 786, 820, 923
HpaII	CCGG	4 cut(s)	128, 278, 709, 957
HphI	GGTGA	1 cut(s)	1004
Hpy188I	TCNGA	2 cut(s)	262, 347
Hpy188III	TCNNGA	5 cut(s)	16, 155, 374, 458, 542
HpyAV	CCTTC	4 cut(s)	115, 119, 142, 640
HpyCH4III	ACNGT	2 cut(s)	353, 992
HpyCH4IV	ACGT	2 cut(s)	564, 714
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	914
HpyF3I	CTNAG	3 cut(s)	137, 765, 941
HpySE526I	ACGT	2 cut(s)	564, 714
Hsp92I	GRCGYC	2 cut(s)	275, 714
Hsp92II	CATG	4 cut(s)	13, 377, 511, 637
HspAI	GCGC	2 cut(s)	275, 678
KasI	GGCGCC	1 cut(s)	274
KpnI	GGTACC	1 cut(s)	176
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	368, 660, 951
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	2 cut(s)	454, 1042
Lsp1109I	GCAGC	3 cut(s)	446, 763, 895
MaeI	CTAG	2 cut(s)	162, 266
MaeII	ACGT	2 cut(s)	564, 714
MaeIII	GTNAC	4 cut(s)	224, 510, 611, 741
MalI	GATC	3 cut(s)	370, 662, 953
MboI	GATC	3 cut(s)	368, 660, 951
MboII	GAAGA	7 cut(s)	231, 247, 389, 452, 608, 652, 1007
MfeI	CAATTG	1 cut(s)	211
MflI	RGATCY	2 cut(s)	368, 951
MhlI	GDGCHC	2 cut(s)	291, 964
MluCI	AATT	7 cut(s)	92, 211, 314, 392, 546, 605, 978
Mly113I	GGCGCC	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	780
MreI	CGCCGGCG	1 cut(s)	277
MroNI	GCCGGC	1 cut(s)	277
MseI	TTAA	2 cut(s)	117, 522
MspI	CCGG	4 cut(s)	128, 278, 709, 957
MspR9I	CCNGG	2 cut(s)	710, 957
MunI	CAATTG	1 cut(s)	211
Mva1269I	GAATGC	1 cut(s)	874
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	914
NaeI	GCCGGC	1 cut(s)	279
NarI	GGCGCC	1 cut(s)	275
NciI	CCSGG	2 cut(s)	710, 957
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	368, 660, 951
NgoMIV	GCCGGC	1 cut(s)	277
NlaIII	CATG	4 cut(s)	13, 377, 511, 637
NlaIV	GGNNCC	3 cut(s)	174, 199, 276
NmuCI	GTSAC	2 cut(s)	224, 611
NruI	TCGCGA	1 cut(s)	17
NspV	TTCGAA	1 cut(s)	468
PagI	TCATGA	1 cut(s)	373
PciSI	GCTCTTC	1 cut(s)	435
PctI	GAATGC	1 cut(s)	874
PdiI	GCCGGC	1 cut(s)	279
PfeI	GAWTC	4 cut(s)	158, 323, 820, 923
PfoI	TCCNGGA	1 cut(s)	708
PkrI	GCNGC	3 cut(s)	436, 778, 910
PleI	GAGTC	1 cut(s)	780
PluTI	GGCGCC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	780
PsiI	TTATAA	1 cut(s)	864
Psp1406I	AACGTT	1 cut(s)	564
PspN4I	GGNNCC	3 cut(s)	174, 199, 276
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	368, 951
RruI	TCGCGA	1 cut(s)	17
RsaI	GTAC	3 cut(s)	33, 174, 763
RsaNI	GTAC	3 cut(s)	32, 173, 762
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	117, 522
SatI	GCNGC	3 cut(s)	435, 777, 909
Sau3AI	GATC	3 cut(s)	368, 660, 951
Sau96I	GGNCC	1 cut(s)	197
ScaI	AGTACT	2 cut(s)	33, 763
SchI	GAGTC	1 cut(s)	780
ScrFI	CCNGG	2 cut(s)	710, 957
SduI	GDGCHC	2 cut(s)	291, 964
SfcI	CTRYAG	1 cut(s)	587
SfoI	GGCGCC	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	468
SgrAI	CRCCGGYG	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	983
SmoI	CTYRAG	1 cut(s)	983
Sse9I	AATT	7 cut(s)	92, 211, 314, 392, 546, 605, 978
SsiI	CCGC	2 cut(s)	281, 756
SspDI	GGCGCC	1 cut(s)	274
SspMI	CTAG	2 cut(s)	162, 266
StyD4I	CCNGG	2 cut(s)	708, 955
StyI	CCWWGG	2 cut(s)	9, 732
TaaI	ACNGT	2 cut(s)	353, 992
TaiI	ACGT	2 cut(s)	567, 717
TaqI	TCGA	4 cut(s)	154, 468, 618, 964
TasI	AATT	7 cut(s)	92, 211, 314, 392, 546, 605, 978
TatI	WGTACW	2 cut(s)	31, 761
TfiI	GAWTC	4 cut(s)	158, 323, 820, 923
Tru1I	TTAA	2 cut(s)	117, 522
Tru9I	TTAA	2 cut(s)	117, 522
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	2 cut(s)	224, 611
TseI	GCWGC	3 cut(s)	434, 776, 908
Tsp45I	GTSAC	2 cut(s)	224, 611
TspDTI	ATGAA	7 cut(s)	101, 326, 390, 496, 567, 622, 764
TspRI	CASTG	1 cut(s)	249
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	3 cut(s)	92, 314, 978
XspI	CTAG	2 cut(s)	162, 266
ZraI	GACGTC	1 cut(s)	715
ZrmI	AGTACT	2 cut(s)	33, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.