Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001880

Physical Location & Seq

Genomic Coordinates Reverse (-)

66338553 .. 66345031

Gene Structure 6479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0534200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAAGGGAAGCACACCATTGAGTACGGTTGCAATAATGCCGTCTCCGACTTTGCTGTGGAGATTCAAGGTCCTGCTGTTCTTCGCTTGGGGTTTCATTTGTTGCAAGATTGGATGGGATTCTGTCATGAGAATGAGTGTGGACTTGCGAGATTTATTTCTGTACGAGGCATTTTTGTACTACAATCCTCTTCTTCTTGTGACTATGATGGTTTGGTTTTGGGGAATTAATCTATGGGTGTTCGCGCAGTCCCAAGTCAGTTATCCTAAAATTTTTGAGCTTGATCAAAATCACTTGACTCACAGAGAAATATGGAAGTGTGCCACATGGATGACCATTGTTGTGCCAACAAGCATGACGGCGTATCTTTATCTCTACTCACATGGAGAAGTGTCGCTGGCTGCATCACAACCAGTACTATTATATGCTGCAGTTGCAATGATTTTGATATTCCCTTTTGATATTTTCTATCTGTCAACTCGCTTTTACTTTTTGAGGACTCTTTGGCGTATCGTTCTCCCTCTACAGGCAATATCCTTTTCTGACTTTTTCGTGGCCGATATTCTTACCTCCATGTCGAAGGTGCTTTCAGATTTGGAGCGATCAGTATGTCGAATGCTCCACCGACAGGTTGCCACTATAGCATGGTTTGAAGCTGATTCAGTTTGTGGCAGTCACTCTGTTGCAATCCCTTTGGTTCTTGTGTTGCCGTATCTTTTTCGTTTGTTCCAATGCCTTCGACAGTACAAGGATACTGGAGAGAGATCATCCCTTTTGAATGCTTTAAAGTATTCGACTGCAGTACCTGTGATTTTTCTCTCAGCCCTTAAATATCACATCTTCCCTGAAAAGTGGACAAACTTCTATCGGCCCCTTTGGCTTCTCTCGGCCATTTTGAACTCTTTGTACTCATTTTATTGGGATGTGACTAGAGATTGGGACTTGAGTGGTTTCACTCGGATTTTCAAGTCCAACAAATCACATATCTTGTCGAACCTCATGCATGGACGGAAATGGGTTTATTTCTGGGTGATAACTAGCAACTTAATACTGCGTTGTACATGGACATACAAGCTGTCTGCCCATCTCCGCCACAATTATCTTACTGTGTTTGCAATCACTGCCTTGGAGATTTTCCGCCGCTTTCAATGGGTTTTCTTCCGTGTGGAGAAGGAGTGGATCAAGATGAGCTCGAAGTCTAACATTCAACTTTCCATGAGTGACATCCCAAATGAGGAAGACAGATTACTTGTTTCTAATGGCCACAGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

424

Amino Acids

49.96

Weight (kDa)

9.31

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXS	PF03124	58 - 394	1.2e-94	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26880 AT1G69620 AT3G28900
fragaria_vesca	FvH4_4g31370 FvH4_5g14990 FvH4_6g48700
malus_domestica	MD09G1050600.v1.1 MD13G1072400.v1.1 MD14G1199600.v1.1 MD16G1073200.v1.1 MD17G1050700.v1.1
prunus_persica	Prupe.1G274500_v2.0.a1 Prupe.3G268200_v2.0.a1 Prupe.5G192900_v2.0.a1
pyrus_communis	pycom06g17090 pycom111g04170 pycom13g06490 pycom14g16540 pycom16g06330 pycom17g04560
rosa_chinensis	RchiOBHm_Chr1g0362681 RchiOBHm_Chr2g0168621 RchiOBHm_Chr4g0439881 RchiOBHm_Chr7g0181331
rosa_laevigata	RLG00000005198 RLG00000006230 RLG00000021791
rosa_multiflora	Rmu_sc0000497.1_g000006 Rmu_sc0001147.1_g000004 Rmu_sc0002416.1_g000010 Rmu_sc0009047.1_g000006 Rmu_sc0016669.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272130 Rroxscaffold_5G00380800
rosa_rugosa	Rorug02G0534200 Rorug04G0322100 Rorug06G0440300
rosa_samantha	Rh2AG604800 Rh2CG586000 Rh2DG628400 Rh7AG042200 Rh7CG043500 Rh7DG042100
rosa_wichuraiana	Rw2G050130 Rw4G031890 Rw7G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	3 cut(s)	1090, 1138, 1141
AclWI	GGATC	1 cut(s)	1187
AcoI	YGGCCR	3 cut(s)	555, 888, 1261
AcsI	RAATTY	1 cut(s)	270
AfaI	GTAC	8 cut(s)	25, 164, 179, 417, 746, 804, 908, 1060
AfiI	CCNNNNNNNGG	3 cut(s)	526, 628, 1234
AgsI	TTSAA	7 cut(s)	67, 653, 778, 898, 967, 1148, 1208
AluBI	AGCT	4 cut(s)	280, 656, 1075, 1191
AluI	AGCT	4 cut(s)	280, 656, 1075, 1191
Alw21I	GWGCWC	1 cut(s)	1193
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	1187
AlwNI	CAGNNNCTG	1 cut(s)	806
AoxI	GGCC	4 cut(s)	555, 869, 888, 1261
ApeKI	GCWGC	2 cut(s)	401, 428
ApoI	RAATTY	1 cut(s)	270
AseI	ATTAAT	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	70, 870
AsuHPI	GGTGA	1 cut(s)	1042
AvaII	GGWCC	1 cut(s)	70
BaeI	ACNNNNGTAYC	2 cut(s)	786, 819
BalI	TGGCCA	1 cut(s)	1263
BanII	GRGCYC	1 cut(s)	1193
BarI	GAAGNNNNNNTAC	2 cut(s)	1230, 1262
BbsI	GAAGAC	1 cut(s)	1245
Bbv12I	GWGCWC	1 cut(s)	1193
BbvI	GCAGC	2 cut(s)	388, 415
BccI	CCATC	3 cut(s)	108, 202, 1092
BceAI	ACGGC	3 cut(s)	25, 375, 694
BcgI	CGANNNNNNTGC	2 cut(s)	982, 1016
BciVI	GTATCC	1 cut(s)	745
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	2 cut(s)	930, 1038
BfmI	CTRYAG	4 cut(s)	429, 524, 639, 798
BfuI	GTATCC	1 cut(s)	745
BglI	GCCNNNNNGGC	1 cut(s)	877
BisI	GCNGC	3 cut(s)	402, 429, 1141
BlsI	GCNGC	3 cut(s)	403, 430, 1142
BmcAI	AGTACT	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	70, 870
BmiI	GGNNCC	1 cut(s)	872
BmsI	GCATC	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	1245
BpmI	CTGGAG	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	964
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	1125
BsaXI	ACNNNNNCTCC	2 cut(s)	1160, 1190
Bsc4I	CCNNNNNNNGG	3 cut(s)	526, 628, 1234
Bse1I	ACTGG	2 cut(s)	413, 760
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	1125
BseGI	GGATG	5 cut(s)	119, 336, 767, 928, 1224
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	3 cut(s)	526, 628, 1234
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	834
BseNI	ACTGG	2 cut(s)	413, 760
BseXI	GCAGC	2 cut(s)	388, 415
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	4 cut(s)	557, 871, 890, 1263
BsiHKAI	GWGCWC	1 cut(s)	1193
BslFI	GGGAC	2 cut(s)	235, 953
BslI	CCNNNNNNNGG	3 cut(s)	526, 628, 1234
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	2 cut(s)	235, 953
BsmI	GAATGC	2 cut(s)	621, 784
BsnI	GGCC	4 cut(s)	557, 871, 890, 1263
Bsp1286I	GDGCHC	1 cut(s)	1193
Bsp1407I	TGTACA	1 cut(s)	1058
Bsp143I	GATC	4 cut(s)	283, 602, 764, 1179
BspACI	CCGC	3 cut(s)	1090, 1138, 1141
BspANI	GGCC	4 cut(s)	557, 871, 890, 1263
BspCNI	CTCAG	1 cut(s)	833
BspFNI	CGCG	1 cut(s)	245
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	872
BspMAI	CTGCAG	2 cut(s)	433, 802
BspPI	GGATC	1 cut(s)	1187
BsrDI	GCAATG	1 cut(s)	444
BsrGI	TGTACA	1 cut(s)	1058
BsrI	ACTGG	2 cut(s)	413, 760
BssECI	CCNNGG	1 cut(s)	1125
BssMI	GATC	4 cut(s)	283, 602, 764, 1179
BssT1I	CCWWGG	1 cut(s)	1125
Bst4CI	ACNGT	4 cut(s)	28, 744, 1108, 1268
Bst6I	CTCTTC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	1121
BstAUI	TGTACA	1 cut(s)	1058
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	1 cut(s)	820
BstF5I	GGATG	5 cut(s)	119, 336, 767, 928, 1224
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	4 cut(s)	286, 605, 767, 1182
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	4 cut(s)	283, 602, 764, 1179
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 641, 877, 1121
BstSFI	CTRYAG	4 cut(s)	429, 524, 639, 798
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	388, 415
BstV2I	GAAGAC	1 cut(s)	1245
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	4 cut(s)	557, 871, 890, 1263
BtsCI	GGATG	5 cut(s)	119, 336, 767, 928, 1224
BtsI	GCAGTG	1 cut(s)	1119
BtsIMutI	CAGTG	2 cut(s)	1119, 1273
Cac8I	GCNNGC	1 cut(s)	399
CaiI	CAGNNNCTG	1 cut(s)	806
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	70, 870
Csp6I	GTAC	8 cut(s)	24, 163, 178, 416, 745, 803, 907, 1059
CviQI	GTAC	8 cut(s)	24, 163, 178, 416, 745, 803, 907, 1059
DdeI	CTNAG	1 cut(s)	820
DpnI	GATC	4 cut(s)	285, 604, 766, 1181
DpnII	GATC	4 cut(s)	283, 602, 764, 1179
DraI	TTTAAA	1 cut(s)	786
EaeI	YGGCCR	3 cut(s)	555, 888, 1261
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	2 cut(s)	1079, 1127
Ecl136II	GAGCTC	1 cut(s)	1191
Eco130I	CCWWGG	1 cut(s)	1125
Eco24I	GRGCYC	1 cut(s)	1193
Eco47I	GGWCC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	1191
EcoICRI	GAGCTC	1 cut(s)	1191
EcoO109I	RGGNCCY	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	1125
EcoT22I	ATGCAT	1 cut(s)	1005
EcoT38I	GRGCYC	1 cut(s)	1193
ErhI	CCWWGG	1 cut(s)	1125
Esp3I	CGTCTC	1 cut(s)	48
FaqI	GGGAC	2 cut(s)	235, 953
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	402, 429, 1141
FokI	GGATG	5 cut(s)	126, 343, 754, 935, 1211
FriOI	GRGCYC	1 cut(s)	1193
Fsp4HI	GCNGC	3 cut(s)	402, 429, 1141
FspBI	CTAG	2 cut(s)	930, 1038
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	3 cut(s)	402, 429, 1141
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	4 cut(s)	557, 871, 890, 1263
HhaI	GCGC	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	5 cut(s)	63, 119, 298, 499, 659
HphI	GGTGA	1 cut(s)	1042
Hpy166II	GTNNAC	3 cut(s)	142, 477, 855
Hpy188I	TCNGA	4 cut(s)	48, 544, 592, 960
Hpy188III	TCNNGA	2 cut(s)	127, 1183
Hpy8I	GTNNAC	3 cut(s)	142, 477, 855
HpyAV	CCTTC	3 cut(s)	574, 746, 1165
HpyCH4III	ACNGT	4 cut(s)	28, 744, 1108, 1268
HpyCH4V	TGCA	9 cut(s)	32, 105, 404, 431, 437, 686, 800, 1003, 1115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 641, 877, 1121
HpyF3I	CTNAG	1 cut(s)	820
HspAI	GCGC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	283, 602, 764, 1179
LmnI	GCTCC	2 cut(s)	598, 624
LpnPI	CCDG	9 cut(s)	86, 383, 426, 512, 614, 741, 819, 858, 1012
Lsp1109I	GCAGC	2 cut(s)	388, 415
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	2 cut(s)	930, 1038
MaeIII	GTNAC	4 cut(s)	199, 674, 925, 1220
MalI	GATC	4 cut(s)	285, 604, 766, 1181
MboI	GATC	4 cut(s)	283, 602, 764, 1179
MboII	GAAGA	6 cut(s)	73, 182, 185, 832, 1150, 1250
MhlI	GDGCHC	1 cut(s)	1193
MlsI	TGGCCA	1 cut(s)	1263
MluCI	AATT	3 cut(s)	225, 270, 1096
MluNI	TGGCCA	1 cut(s)	1263
MlyI	GAGTC	2 cut(s)	292, 493
MmeI	TCCRAC	2 cut(s)	71, 996
MnlI	CCTC	7 cut(s)	160, 198, 489, 531, 580, 1007, 1228
Mox20I	TGGCCA	1 cut(s)	1263
Mph1103I	ATGCAT	1 cut(s)	1005
MscI	TGGCCA	1 cut(s)	1263
MseI	TTAA	4 cut(s)	228, 785, 828, 1046
MslI	CAYNNNNRTG	3 cut(s)	131, 329, 341
Msp20I	TGGCCA	1 cut(s)	1263
Mva1269I	GAATGC	2 cut(s)	621, 784
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	4 cut(s)	434, 641, 877, 1121
NdeII	GATC	4 cut(s)	283, 602, 764, 1179
NlaIV	GGNNCC	1 cut(s)	872
NmeAIII	GCCGAG	1 cut(s)	866
NmuCI	GTSAC	4 cut(s)	199, 674, 925, 1220
NsiI	ATGCAT	1 cut(s)	1005
PagI	TCATGA	1 cut(s)	126
PctI	GAATGC	2 cut(s)	621, 784
PfeI	GAWTC	3 cut(s)	63, 119, 659
PkrI	GCNGC	3 cut(s)	403, 430, 1142
PleI	GAGTC	2 cut(s)	292, 493
PpsI	GAGTC	2 cut(s)	292, 493
PpuMI	RGGWCCY	1 cut(s)	70
PshBI	ATTAAT	1 cut(s)	228
Psp124BI	GAGCTC	1 cut(s)	1193
Psp5II	RGGWCCY	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	872
PspPI	GGNCC	2 cut(s)	70, 870
PspPPI	RGGWCCY	1 cut(s)	70
PsrI	GAACNNNNNNTAC	2 cut(s)	890, 922
PstI	CTGCAG	2 cut(s)	433, 802
PstNI	CAGNNNCTG	1 cut(s)	806
RsaI	GTAC	8 cut(s)	25, 164, 179, 417, 746, 804, 908, 1060
RsaNI	GTAC	8 cut(s)	24, 163, 178, 416, 745, 803, 907, 1059
RseI	CAYNNNNRTG	3 cut(s)	131, 329, 341
SacI	GAGCTC	1 cut(s)	1193
SaqAI	TTAA	4 cut(s)	228, 785, 828, 1046
SatI	GCNGC	3 cut(s)	402, 429, 1141
Sau3AI	GATC	4 cut(s)	283, 602, 764, 1179
Sau96I	GGNCC	2 cut(s)	70, 870
ScaI	AGTACT	1 cut(s)	417
SchI	GAGTC	2 cut(s)	292, 493
SduI	GDGCHC	1 cut(s)	1193
SfaNI	GCATC	1 cut(s)	413
SfcI	CTRYAG	4 cut(s)	429, 524, 639, 798
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	3 cut(s)	131, 329, 341
SmlI	CTYRAG	1 cut(s)	943
SmoI	CTYRAG	1 cut(s)	943
Sse9I	AATT	3 cut(s)	225, 270, 1096
SsiI	CCGC	3 cut(s)	1090, 1138, 1141
SspMI	CTAG	2 cut(s)	930, 1038
SstI	GAGCTC	1 cut(s)	1193
StyI	CCWWGG	1 cut(s)	1125
TaaI	ACNGT	4 cut(s)	28, 744, 1108, 1268
TaqI	TCGA	6 cut(s)	578, 613, 739, 794, 992, 1193
TasI	AATT	3 cut(s)	225, 270, 1096
TatI	WGTACW	5 cut(s)	177, 415, 744, 906, 1058
TauI	GCSGC	1 cut(s)	1143
TfiI	GAWTC	3 cut(s)	63, 119, 659
Tru1I	TTAA	4 cut(s)	228, 785, 828, 1046
Tru9I	TTAA	4 cut(s)	228, 785, 828, 1046
TscAI	CASTG	2 cut(s)	1126, 1273
TseFI	GTSAC	4 cut(s)	199, 674, 925, 1220
TseI	GCWGC	2 cut(s)	401, 428
Tsp45I	GTSAC	4 cut(s)	199, 674, 925, 1220
TspDTI	ATGAA	2 cut(s)	17, 85
TspGWI	ACGGA	2 cut(s)	1024, 1151
TspRI	CASTG	2 cut(s)	1126, 1273
VpaK11BI	GGWCC	1 cut(s)	70
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	1 cut(s)	270
XspI	CTAG	2 cut(s)	930, 1038
ZrmI	AGTACT	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.