Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001880

Physical Location & Seq

Genomic Coordinates Reverse (-)

15748807 .. 15750888

Gene Structure 2082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G192900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTGCAGAGGCTCACATACCGTACGCGCCATAGCTATGCAACCAAGTCAAACCAGCATCGGATCGTCAAGACCCCTGGTGGAAAGCTTGTGTATCAGACCACTAAGAAGAGAGCAAGTGGACCCAAGTGTCCTGTTACTGGAAAGAGGATCCAAGGGATTCCTCACCTGAGACCTGCTGAATATAAGAGGTCTAGACTATCAAGGAACAGGAGGACTGTGAATCGTGCATATGGGGGTGTGCTGTCTGGTGGAGCTGTACGAGAGAGGATAATCCGAGCCTTTTTGGTGGAAGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATTCAGAAGGCAAAAGAGAAGCAGGCATCAAAGAGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34e

Protein Analysis

122

Amino Acids

13.8

Weight (kDa)

11.6

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26880 AT1G69620 AT3G28900
fragaria_vesca	FvH4_4g31370 FvH4_5g14990 FvH4_6g48700
malus_domestica	MD09G1050600.v1.1 MD13G1072400.v1.1 MD14G1199600.v1.1 MD16G1073200.v1.1 MD17G1050700.v1.1
prunus_persica	Prupe.1G274500_v2.0.a1 Prupe.3G268200_v2.0.a1 Prupe.5G192900_v2.0.a1
pyrus_communis	pycom06g17090 pycom111g04170 pycom13g06490 pycom14g16540 pycom16g06330 pycom17g04560
rosa_chinensis	RchiOBHm_Chr1g0362681 RchiOBHm_Chr2g0168621 RchiOBHm_Chr4g0439881 RchiOBHm_Chr7g0181331
rosa_laevigata	RLG00000005198 RLG00000006230 RLG00000021791
rosa_multiflora	Rmu_sc0000497.1_g000006 Rmu_sc0001147.1_g000004 Rmu_sc0002416.1_g000010 Rmu_sc0009047.1_g000006 Rmu_sc0016669.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272130 Rroxscaffold_5G00380800
rosa_rugosa	Rorug02G0534200 Rorug04G0322100 Rorug06G0440300
rosa_samantha	Rh2AG604800 Rh2CG586000 Rh2DG628400 Rh7AG042200 Rh7CG043500 Rh7DG042100
rosa_wichuraiana	Rw2G050130 Rw4G031890 Rw7G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	129
Acc36I	ACCTGC	1 cut(s)	184
AccII	CGCG	1 cut(s)	28
AclWI	GGATC	3 cut(s)	71, 145, 158
AfaI	GTAC	2 cut(s)	25, 261
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	4 cut(s)	36, 88, 257, 363
AluI	AGCT	4 cut(s)	36, 88, 257, 363
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	3 cut(s)	71, 145, 158
ApeKI	GCWGC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	2 cut(s)	124, 152
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	2 cut(s)	67, 359
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	76, 154
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	76, 154
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	28
BsiWI	CGTACG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	166
Bsp143I	GATC	3 cut(s)	63, 150, 303
BspCNI	CTCAG	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	124, 152
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	3 cut(s)	71, 145, 158
BspQI	GCTCTTC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	76, 154
BssMI	GATC	3 cut(s)	63, 150, 303
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	23, 220
Bst6I	CTCTTC	2 cut(s)	104, 288
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	105, 170
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	3 cut(s)	66, 153, 306
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	3 cut(s)	63, 150, 303
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstUI	CGCG	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	24, 260
CviJI	RGCY	6 cut(s)	13, 36, 88, 257, 281, 363
CviKI_1	RGCY	6 cut(s)	13, 36, 88, 257, 281, 363
CviQI	GTAC	2 cut(s)	24, 260
DdeI	CTNAG	2 cut(s)	105, 170
DpnI	GATC	3 cut(s)	65, 152, 305
DpnII	GATC	3 cut(s)	63, 150, 303
DrdI	GACNNNNNNGTC	1 cut(s)	129
DseDI	GACNNNNNNGTC	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	104, 288
EarI	CTCTTC	2 cut(s)	104, 288
Eco130I	CCWWGG	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	154
FaiI	YATR	6 cut(s)	19, 33, 39, 186, 232, 234
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	361
Fsp4HI	GCNGC	1 cut(s)	361
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	361
HhaI	GCGC	1 cut(s)	30
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	3 cut(s)	160, 223, 325
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	4 cut(s)	63, 99, 278, 330
Hpy188III	TCNNGA	3 cut(s)	70, 195, 307
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	307, 325
HpyCH4III	ACNGT	2 cut(s)	23, 220
HpyCH4V	TGCA	3 cut(s)	7, 41, 230
HpyF3I	CTNAG	2 cut(s)	105, 170
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	63, 150, 303
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	254
LweI	GCATC	2 cut(s)	67, 359
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	3 cut(s)	65, 152, 305
MboI	GATC	3 cut(s)	63, 150, 303
MboII	GAAGA	5 cut(s)	121, 305, 313, 322, 334
MflI	RGATCY	1 cut(s)	150
MnlI	CCTC	6 cut(s)	3, 141, 174, 183, 207, 261
MslI	CAYNNNNRTG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	3 cut(s)	63, 150, 303
NlaIV	GGNNCC	2 cut(s)	124, 152
PciSI	GCTCTTC	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	160, 223, 325
Pfl23II	CGTACG	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspLI	CGTACG	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	124, 152
PspPI	GGNCC	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	2 cut(s)	25, 261
RsaNI	GTAC	2 cut(s)	24, 260
RseI	CAYNNNNRTG	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	288
SatI	GCNGC	1 cut(s)	361
Sau3AI	GATC	3 cut(s)	63, 150, 303
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	8 cut(s)	38, 90, 171, 178, 194, 259, 318, 365
SfaNI	GCATC	2 cut(s)	67, 359
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	36
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	23, 220
TfiI	GAWTC	3 cut(s)	160, 223, 325
TseI	GCWGC	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.