Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001880

Physical Location & Seq

Genomic Coordinates Reverse (-)

10902003 .. 10904458

Gene Structure 2456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTTCAACGTCTTGTTTACCGATCACGTCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGTGCCCTGTTACTGGCAAGAGAATCCAAGGGATTCCGCATTTGAGACCTGCTGAGTACAAAAGGTCAAGGTTGGCAAGGAACGAGAGGACAGTGAATCGTGCATATGGTGGTGTTCTATCTGGAGTTGCTGTTAGGGAGAGGATCGTCAGGGCCTTCTTGGTTGAAGAACAGAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCGAAAGAGAAGACTGCACCAAAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34e

Protein Analysis

120

Amino Acids

13.65

Weight (kDa)

11.37

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L34e	PF01199	1 - 96	1.1e-36	Ribosomal protein L34e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26880 AT1G69620 AT3G28900
fragaria_vesca	FvH4_4g31370 FvH4_5g14990 FvH4_6g48700
malus_domestica	MD09G1050600.v1.1 MD13G1072400.v1.1 MD14G1199600.v1.1 MD16G1073200.v1.1 MD17G1050700.v1.1
prunus_persica	Prupe.1G274500_v2.0.a1 Prupe.3G268200_v2.0.a1 Prupe.5G192900_v2.0.a1
pyrus_communis	pycom06g17090 pycom111g04170 pycom13g06490 pycom14g16540 pycom16g06330 pycom17g04560
rosa_chinensis	RchiOBHm_Chr1g0362681 RchiOBHm_Chr2g0168621 RchiOBHm_Chr4g0439881 RchiOBHm_Chr7g0181331
rosa_laevigata	RLG00000005198 RLG00000006230 RLG00000021791
rosa_multiflora	Rmu_sc0000497.1_g000006 Rmu_sc0001147.1_g000004 Rmu_sc0002416.1_g000010 Rmu_sc0009047.1_g000006 Rmu_sc0016669.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272130 Rroxscaffold_5G00380800
rosa_rugosa	Rorug02G0534200 Rorug04G0322100 Rorug06G0440300
rosa_samantha	Rh2AG604800 Rh2CG586000 Rh2DG628400 Rh7AG042200 Rh7CG043500 Rh7DG042100
rosa_wichuraiana	Rw2G050130 Rw4G031890 Rw7G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AciI	CCGC	2 cut(s)	61, 164
AclWI	GGATC	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	8, 293, 322
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	2 cut(s)	116, 325
AluI	AGCT	2 cut(s)	116, 325
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	122, 279
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	350
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	122
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	122, 279
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	23, 270
BspACI	CCGC	2 cut(s)	61, 164
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	23, 270
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	126, 180
BstKTI	GATC	2 cut(s)	26, 273
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	2 cut(s)	23, 270
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	281
BtrI	CACGTC	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	122, 279
Csp6I	GTAC	1 cut(s)	184
CviJI	RGCY	3 cut(s)	116, 281, 325
CviKI_1	RGCY	3 cut(s)	116, 281, 325
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	126, 180
DpnI	GATC	2 cut(s)	25, 272
DpnII	GATC	2 cut(s)	23, 270
Eco130I	CCWWGG	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	154
FaiI	YATR	2 cut(s)	232, 234
FauNDI	CATATG	1 cut(s)	232
FspBI	CTAG	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	3 cut(s)	150, 160, 223
Hpy166II	GTNNAC	2 cut(s)	19, 122
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	1 cut(s)	249
Hpy8I	GTNNAC	2 cut(s)	19, 122
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	3 cut(s)	292, 307, 325
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	2 cut(s)	10, 28
HpyCH4V	TGCA	2 cut(s)	230, 350
HpyF3I	CTNAG	2 cut(s)	126, 180
HpySE526I	ACGT	2 cut(s)	10, 28
Kzo9I	GATC	2 cut(s)	23, 270
LpnPI	CCDG	8 cut(s)	63, 90, 110, 126, 147, 189, 234, 262
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	2 cut(s)	10, 28
MaeIII	GTNAC	2 cut(s)	29, 136
MalI	GATC	2 cut(s)	25, 272
MboI	GATC	2 cut(s)	23, 270
MboII	GAAGA	4 cut(s)	305, 313, 322, 355
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	2 cut(s)	207, 261
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	2 cut(s)	23, 270
NmuCI	GTSAC	1 cut(s)	29
PfeI	GAWTC	3 cut(s)	150, 160, 223
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	122, 279
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
Sau3AI	GATC	2 cut(s)	23, 270
Sau96I	GGNCC	2 cut(s)	122, 279
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	9 cut(s)	13, 31, 118, 127, 178, 194, 200, 318, 327
SfaNI	GCATC	1 cut(s)	72
SinI	GGWCC	1 cut(s)	122
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	2 cut(s)	61, 164
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	2 cut(s)	13, 31
TasI	AATT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	3 cut(s)	150, 160, 223
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	29
TspRI	CASTG	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	122
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.