Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001880

Physical Location & Seq

Genomic Coordinates Reverse (-)

3108587 .. 3110118

Gene Structure 1532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04560.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTGCAGCGGCTCACGTACCGGAAGCGTCACAGCTACGCCACCAAGTCCAACCAGCACCGCATCGTCAAAACTCCCGGGGGCAAATTGATCTATCAGACCACCAAGAAGAGAGCCAGCGGACCCAAATGCCCTGTTACTGGCAAGAGAATCCAAGGGATTCCTCACTTGAGACCTGCTGAGTACAAGAGGTCTAGATTATCTAGGAACCGCAGGACTGTGAACCGGGCCTATGGTGGTGTATTGTCTGGAGGTGCAGTTAGGGAGAGGATCATTCGAGCTTTCTTGGTCGAAGAGCAAAAGATCGTGAAGAAGGTTTTGAAGATTCAAAAGGCTAAGGAAAGGCAGGCGGAGAAAGGAGCCAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34e

Protein Analysis

124

Amino Acids

14.13

Weight (kDa)

11.57

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26880 AT1G69620 AT3G28900
fragaria_vesca	FvH4_4g31370 FvH4_5g14990 FvH4_6g48700
malus_domestica	MD09G1050600.v1.1 MD13G1072400.v1.1 MD14G1199600.v1.1 MD16G1073200.v1.1 MD17G1050700.v1.1
prunus_persica	Prupe.1G274500_v2.0.a1 Prupe.3G268200_v2.0.a1 Prupe.5G192900_v2.0.a1
pyrus_communis	pycom06g17090 pycom111g04170 pycom13g06490 pycom14g16540 pycom16g06330 pycom17g04560
rosa_chinensis	RchiOBHm_Chr1g0362681 RchiOBHm_Chr2g0168621 RchiOBHm_Chr4g0439881 RchiOBHm_Chr7g0181331
rosa_laevigata	RLG00000005198 RLG00000006230 RLG00000021791
rosa_multiflora	Rmu_sc0000497.1_g000006 Rmu_sc0001147.1_g000004 Rmu_sc0002416.1_g000010 Rmu_sc0009047.1_g000006 Rmu_sc0016669.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272130 Rroxscaffold_5G00380800
rosa_rugosa	Rorug02G0534200 Rorug04G0322100 Rorug06G0440300
rosa_samantha	Rh2AG604800 Rh2CG586000 Rh2DG628400 Rh7AG042200 Rh7CG043500 Rh7DG042100
rosa_wichuraiana	Rw2G050130 Rw4G031890 Rw7G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AciI	CCGC	5 cut(s)	10, 61, 120, 211, 350
AclWI	GGATC	1 cut(s)	278
AfaI	GTAC	2 cut(s)	20, 185
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	322, 329
AluBI	AGCT	2 cut(s)	36, 281
AluI	AGCT	2 cut(s)	36, 281
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	122, 228
AsuC2I	CCSGG	3 cut(s)	78, 79, 227
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	19
BcnI	CCSGG	3 cut(s)	78, 79, 227
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	2 cut(s)	195, 204
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	2 cut(s)	8, 11
BlsI	GCNGC	2 cut(s)	9, 12
Bme1390I	CCNGG	3 cut(s)	78, 79, 227
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	122, 228
BmiI	GGNNCC	3 cut(s)	124, 209, 361
BmrFI	CCNGG	3 cut(s)	78, 79, 227
BmsI	GCATC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	3 cut(s)	78, 79, 227
BsaAI	YACGTR	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	3 cut(s)	77, 78, 154
BsaWI	WCCGGW	1 cut(s)	21
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	145
BseDI	CCNNGG	3 cut(s)	77, 78, 154
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	2 cut(s)	26, 276
BshFI	GGCC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	22, 78, 226
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	166
BsoBI	CYCGRG	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	90, 270, 303
BspACI	CCGC	5 cut(s)	10, 61, 120, 211, 350
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	124, 209, 361
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	3 cut(s)	77, 78, 154
BssMI	GATC	3 cut(s)	90, 270, 303
BssT1I	CCWWGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	2 cut(s)	104, 288
BstBAI	YACGTR	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	118, 348
BstDEI	CTNAG	2 cut(s)	180, 336
BstKTI	GATC	3 cut(s)	93, 273, 306
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	3 cut(s)	90, 270, 303
BstSCI	CCNGG	3 cut(s)	76, 77, 225
BstV1I	GCAGC	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	230
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	118, 348
Cfr13I	GGNCC	2 cut(s)	122, 228
Cfr9I	CCCGGG	1 cut(s)	77
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	19, 184
CviJI	RGCY	7 cut(s)	13, 36, 116, 230, 281, 335, 362
CviKI_1	RGCY	7 cut(s)	13, 36, 116, 230, 281, 335, 362
CviQI	GTAC	2 cut(s)	19, 184
DdeI	CTNAG	2 cut(s)	180, 336
DpnI	GATC	3 cut(s)	92, 272, 305
DpnII	GATC	3 cut(s)	90, 270, 303
Eam1104I	CTCTTC	2 cut(s)	104, 288
EarI	CTCTTC	2 cut(s)	104, 288
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	154
FaiI	YATR	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	8, 11
Fsp4HI	GCNGC	2 cut(s)	8, 11
FspBI	CTAG	2 cut(s)	195, 204
GluI	GCNGC	2 cut(s)	8, 11
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	3 cut(s)	22, 78, 226
HgaI	GACGC	1 cut(s)	17
HinfI	GANTC	3 cut(s)	150, 160, 325
HpaII	CCGG	3 cut(s)	22, 78, 226
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	195, 249, 307
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	7, 257
HpyF3I	CTNAG	2 cut(s)	180, 336
HpySE526I	ACGT	1 cut(s)	17
Kzo9I	GATC	3 cut(s)	90, 270, 303
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	195, 204
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	29, 136
MalI	GATC	3 cut(s)	92, 272, 305
MboI	GATC	3 cut(s)	90, 270, 303
MboII	GAAGA	4 cut(s)	121, 305, 322, 334
MluCI	AATT	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	174, 183, 245, 261
MspA1I	CMGCKG	2 cut(s)	10, 120
MspI	CCGG	3 cut(s)	22, 78, 226
MspR9I	CCNGG	3 cut(s)	78, 79, 227
NciI	CCSGG	3 cut(s)	78, 79, 227
NdeII	GATC	3 cut(s)	90, 270, 303
NlaIV	GGNNCC	3 cut(s)	124, 209, 361
NmuCI	GTSAC	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	150, 160, 325
PkrI	GCNGC	2 cut(s)	9, 12
Ppu21I	YACGTR	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	124, 209, 361
PspPI	GGNCC	2 cut(s)	122, 228
RsaI	GTAC	2 cut(s)	20, 185
RsaNI	GTAC	2 cut(s)	19, 184
SapI	GCTCTTC	1 cut(s)	288
SatI	GCNGC	2 cut(s)	8, 11
Sau3AI	GATC	3 cut(s)	90, 270, 303
Sau96I	GGNCC	2 cut(s)	122, 228
ScrFI	CCNGG	3 cut(s)	78, 79, 227
SetI	ASST	7 cut(s)	20, 38, 178, 194, 256, 283, 318
SfaNI	GCATC	1 cut(s)	72
SinI	GGWCC	1 cut(s)	122
SmaI	CCCGGG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	5 cut(s)	10, 61, 120, 211, 350
SspMI	CTAG	2 cut(s)	195, 204
StyD4I	CCNGG	3 cut(s)	76, 77, 225
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	277, 291
TasI	AATT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	3 cut(s)	150, 160, 325
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	29
TspMI	CCCGGG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	194
XmaI	CCCGGG	1 cut(s)	77
XspI	CTAG	2 cut(s)	195, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.